Revision 3907
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.specimens.csv | ||
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collday,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/DayCollected; http://rs.tdwg.org/dwc/terms/#eventDate,11; 44 |
| 9 | 9 |
collmonth,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/MonthCollected; http://rs.tdwg.org/dwc/terms/#eventDate,10; 44 |
| 10 | 10 |
collyear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/YearCollected; http://rs.tdwg.org/dwc/terms/#eventDate,9; 44 |
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herbarium,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12 |
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collectno,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/CollectorNumber; http://rs.tdwg.org/dwc/terms/#recordNumber,7; 22 |
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comment1,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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comment2,/location/locationevent/specimenreplicate/description/_merge/1/_merge/2,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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comment3,/location/locationevent/specimenreplicate/description/_merge/1/_merge/3,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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comment4,/location/locationevent/specimenreplicate/description/_merge/1/_merge/4,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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campus,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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loanto,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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inorout,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
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cultivated,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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cultivated,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
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cultivated,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
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accession,/location/locationevent/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
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SciName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134
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authors,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,153
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infraname,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,150
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species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Species; http://rs.tdwg.org/dwc/terms/#specificEpithet,12; 149
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genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147
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family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/#family,146
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collector,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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collector1,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/2,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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collector2,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/3,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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collector3,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/4,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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herbarium,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12
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collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/CollectorNumber; http://rs.tdwg.org/dwc/terms/#recordNumber,7; 22
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comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/1,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/2,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/3,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/4,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
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cultivated,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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cultivated,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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cultivated,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19
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collector,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/verbatimcollectorname/_merge/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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collector1,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/verbatimcollectorname/_merge/2,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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collector2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/verbatimcollectorname/_merge/3,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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collector3,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/verbatimcollectorname/_merge/4,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134
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authors,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,153
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infraname,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,150
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species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Species; http://rs.tdwg.org/dwc/terms/#specificEpithet,12; 149
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147
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family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/#family,146
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| 34 | 34 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/#locality,68 |
| 35 | 35 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/#habitat,52 |
| 36 | 36 |
accession,/location/sourceaccessioncode/_alt/1,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Mapped specimenreplicate via plantobservation for consistency with plots data. (This change is required for VegCSV table merging to work properly.) This is also a more accurate way of representing the data, because a specimen in fact comes from a plant, and it's natural to place the plant-related data (measurements, etc.) in the plantobservation table.