Revision 4077
Added by Aaron Marcuse-Kubitza over 12 years ago
VegCSV-VegBIEN.specimens.csv | ||
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"VegCSV[DwC]","VegBIEN:","Comments" |
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"plotArea","/location/area", |
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"plotName","/location/authorlocationcode/_alt/1", |
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"fieldNumber","/location/authorlocationcode/_alt/2", |
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"voucherType","/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
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"catalogNumber","/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else", |
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"verbatimElevation","/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
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"maximumElevationInMeters","/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
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"minimumElevationInMeters","/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
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"minimumElevationInMeters","/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
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"maximumElevationInMeters","/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
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"minimumElevationInMeters","/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
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"landform","/location/landform", |
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"coordinateUncertaintyInMeters","/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1", |
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"footprintWKT","/location/locationdetermination/footprintgeometry_dwc", |
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"decimalLatitude","/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
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"decimalLongitude","/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
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"county","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
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"stateProvince","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
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"country","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
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"continent","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
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"samplingProtocol","/location/locationevent/*_id/method/name", |
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"projectName","/location/locationevent/*_id/project/projectname", |
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"projectID","/location/locationevent/*_id/project/sourceaccessioncode", |
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"fieldNumber","/location/locationevent/authoreventcode", |
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"communityID","/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
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"communityName","/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription", |
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"plotEventEndDate","/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value", |
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"eventDate","/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1", |
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"plotEventStartDate","/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value", |
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"eventDate","/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1", |
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"precipitation","/location/locationevent/precipitation", |
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"acidity","/location/locationevent/soilobs/acidity", |
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"baseSaturation","/location/locationevent/soilobs/basesaturation", |
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"calcium","/location/locationevent/soilobs/calcium", |
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"carbon","/location/locationevent/soilobs/carbon", |
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"cationExchangeCapacity","/location/locationevent/soilobs/cationexchangecapacity", |
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"clay","/location/locationevent/soilobs/clay", |
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"conductivity","/location/locationevent/soilobs/conductivity", |
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"magnesium","/location/locationevent/soilobs/magnesium", |
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"nitrogen","/location/locationevent/soilobs/nitrogen", |
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"organic","/location/locationevent/soilobs/organic", |
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"ph","/location/locationevent/soilobs/ph", |
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"phosphorus","/location/locationevent/soilobs/phosphorus", |
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"potassium","/location/locationevent/soilobs/potassium", |
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"sand","/location/locationevent/soilobs/sand", |
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"silt","/location/locationevent/soilobs/silt", |
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"sodium","/location/locationevent/soilobs/sodium", |
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"texture","/location/locationevent/soilobs/texture", |
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"individualCount","/location/locationevent/taxonoccurrence/aggregateoccurrence/count", |
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"coverPercent","/location/locationevent/taxonoccurrence/aggregateoccurrence/cover", |
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"censusNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
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"volumeCanopy","/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover", |
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"fieldNotes","/location/locationevent/taxonoccurrence/aggregateoccurrence/notes", |
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"recordNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber", |
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"individualID","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode", |
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"voucherType","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
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"catalogNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
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"stemCount","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount", |
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"basalDiameter","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter", |
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"canopyForm","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
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"canopyPosition","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
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"diameterBreastHeightGentry","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
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"lianaInfestation","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
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"stemNotes","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
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"diameterBreastHeight","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight", |
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"height","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height", |
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"heightFirstBranch","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch", |
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"tag","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Quotes sort it before tag2" |
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"previousTag","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag", |
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"relativePlotX","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition", |
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"relativePlotY","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition", |
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"recordNumber","/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1", |
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"scientificName","/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2", |
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"growthForm","/location/locationevent/taxonoccurrence/growthform", |
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"individualID","/location/locationevent/taxonoccurrence/sourceaccessioncode", |
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"computer.scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
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"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
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"computer.infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
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"computer.specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
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"computer.genus","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
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"computer.family","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
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"scientificName","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
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"scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
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"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
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"specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
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"genus","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
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"family","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
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"order","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
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"class","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
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"phylum","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
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"kingdom","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
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"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit", |
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"recordedBy.givenName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first", |
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"recordedBy.surName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last", |
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"voucherType","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
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"catalogNumber","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
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"temperature","/location/locationevent/temperature", |
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"maximumDepthInMeters","/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
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"minimumDepthInMeters","/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
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"locality","/location/locationnarrative/_merge/1", |
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"plotNotes","/location/notespublic", |
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"parentPlotName","/location/parent_id/location/authorlocationcode", |
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"parentLocationID","/location/parent_id/location/sourceaccessioncode", |
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"slopeAspect","/location/slopeaspect/_compass/value", |
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"slopeGradient","/location/slopegradient", |
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"locationID","/location/sourceaccessioncode", |
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VegCSV[DwC],VegBIEN:,Comments |
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plotArea,/location/area, |
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plotName,/location/authorlocationcode/_alt/1, |
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fieldNumber,/location/authorlocationcode/_alt/2, |
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occurrenceID,/location/authorlocationcode/_alt/3, |
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institutionCode,/location/authorlocationcode/_alt/4/_merge/1, |
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collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1, |
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collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2, |
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voucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
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catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else", |
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verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
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maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
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minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
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minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
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maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
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minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
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landform,/location/landform, |
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coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
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coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2, |
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footprintWKT,/location/locationdetermination/footprintgeometry_dwc, |
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decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
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verbatimLatitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value", |
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decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
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verbatimLongitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value", |
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county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
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stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
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country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
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continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
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samplingProtocol,/location/locationevent/*_id/method/name, |
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30 |
projectName,/location/locationevent/*_id/project/projectname, |
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31 |
projectID,/location/locationevent/*_id/project/sourceaccessioncode, |
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32 |
fieldNumber,/location/locationevent/authoreventcode, |
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33 |
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
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34 |
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
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35 |
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
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eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1, |
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37 |
dateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2, |
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plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
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39 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
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dateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2, |
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precipitation,/location/locationevent/precipitation, |
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42 |
acidity,/location/locationevent/soilobs/acidity, |
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43 |
baseSaturation,/location/locationevent/soilobs/basesaturation, |
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44 |
calcium,/location/locationevent/soilobs/calcium, |
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45 |
carbon,/location/locationevent/soilobs/carbon, |
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46 |
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity, |
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47 |
clay,/location/locationevent/soilobs/clay, |
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48 |
conductivity,/location/locationevent/soilobs/conductivity, |
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49 |
magnesium,/location/locationevent/soilobs/magnesium, |
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50 |
nitrogen,/location/locationevent/soilobs/nitrogen, |
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51 |
organic,/location/locationevent/soilobs/organic, |
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52 |
ph,/location/locationevent/soilobs/ph, |
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53 |
phosphorus,/location/locationevent/soilobs/phosphorus, |
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54 |
potassium,/location/locationevent/soilobs/potassium, |
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55 |
sand,/location/locationevent/soilobs/sand, |
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56 |
silt,/location/locationevent/soilobs/silt, |
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57 |
sodium,/location/locationevent/soilobs/sodium, |
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58 |
texture,/location/locationevent/soilobs/texture, |
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59 |
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date, |
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60 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
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61 |
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
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62 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
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63 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover, |
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64 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
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65 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
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sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
|
67 |
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
68 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
69 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
70 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
|
71 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
|
72 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
|
73 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
|
74 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
|
75 |
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter, |
|
76 |
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
|
77 |
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
|
78 |
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
|
79 |
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
80 |
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
|
81 |
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight, |
|
82 |
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height, |
|
83 |
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch, |
|
84 |
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
|
85 |
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
|
86 |
relativePlotX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
|
87 |
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
|
88 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
|
89 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2, |
|
90 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
|
91 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
|
92 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
|
93 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
|
94 |
computer.scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
95 |
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
96 |
computer.infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
97 |
computer.specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
98 |
computer.genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
99 |
computer.family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
100 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
|
101 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
|
102 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
|
103 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
104 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
105 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
106 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
107 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
108 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
109 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
|
110 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
|
111 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
|
112 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
113 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value, |
|
114 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes, |
|
115 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit, |
|
116 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
|
117 |
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first, |
|
118 |
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last, |
|
119 |
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
120 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
121 |
temperature,/location/locationevent/temperature, |
|
122 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
123 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
124 |
locality,/location/locationnarrative/_merge/1, |
|
125 |
verbatimLocality,/location/locationnarrative/_merge/2, |
|
126 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
|
127 |
plotNotes,/location/notespublic, |
|
128 |
parentPlotName,/location/parent_id/location/authorlocationcode, |
|
129 |
parentLocationID,/location/parent_id/location/sourceaccessioncode, |
|
130 |
slopeAspect,/location/slopeaspect/_compass/value, |
|
131 |
slopeGradient,/location/slopegradient, |
|
132 |
locationID,/location/sourceaccessioncode, |
|
133 |
acceptedNameUsage,, |
|
134 |
acceptedNameUsageID,, |
|
135 |
associatedMedia,, |
|
136 |
associatedOccurrences,, |
|
137 |
associatedReferences,, |
|
138 |
associatedSequences,, |
|
139 |
associatedTaxa,, |
|
140 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term. |
|
141 |
bed,, |
|
142 |
behavior,, |
|
143 |
countryCode,, |
|
144 |
dataGeneralizations,, |
|
145 |
datasetID,, |
|
146 |
datasetName,, |
|
147 |
day,,Brad: OMIT |
|
148 |
dcterms:accessRights,, |
|
149 |
dcterms:bibliographicCitation,, |
|
150 |
dcterms:language,, |
|
151 |
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source." |
|
152 |
dcterms:references,, |
|
153 |
dcterms:rights,, |
|
154 |
dcterms:rightsHolder,, |
|
155 |
dcterms:type,, |
|
156 |
disposition,, |
|
157 |
dynamicProperties,, |
|
158 |
earliestAgeOrLowestStage,, |
|
159 |
earliestEonOrLowestEonothem,, |
|
160 |
earliestEpochOrLowestSeries,, |
|
161 |
earliestEraOrLowestErathem,, |
|
162 |
earliestPeriodOrLowestSystem,, |
|
163 |
endDayOfYear,, |
|
164 |
eventID,, |
|
165 |
eventRemarks,, |
|
166 |
eventTime,,Brad: OMIT |
|
167 |
footprintSRS,, |
|
168 |
footprintSpatialFit,, |
|
169 |
formation,, |
|
170 |
geodeticDatum,, |
|
171 |
geologicalContextID,, |
|
172 |
georeferenceProtocol,, |
|
173 |
georeferenceRemarks,, |
|
174 |
georeferenceSources,, |
|
175 |
georeferenceVerificationStatus,, |
|
176 |
georeferencedBy,, |
|
177 |
georeferencedDate,, |
|
178 |
group,, |
|
179 |
higherClassification,, |
|
180 |
higherGeography,, |
|
181 |
higherGeographyID,, |
|
182 |
highestBiostratigraphicZone,, |
|
183 |
identificationID,, |
|
184 |
identificationReferences,, |
|
185 |
identificationRemarks,, |
|
186 |
identificationVerificationStatus,, |
|
187 |
informationWithheld,, |
|
188 |
institutionID,, |
|
189 |
island,, |
|
190 |
islandGroup,, |
|
191 |
latestAgeOrHighestStage,, |
|
192 |
latestEonOrHighestEonothem,, |
|
193 |
latestEpochOrHighestSeries,, |
|
194 |
latestEraOrHighestErathem,, |
|
195 |
latestPeriodOrHighestSystem,, |
|
196 |
lifeStage,, |
|
197 |
lithostratigraphicTerms,, |
|
198 |
locationAccordingTo,, |
|
199 |
locationRemarks,, |
|
200 |
lowestBiostratigraphicZone,, |
|
201 |
maximumDistanceAboveSurfaceInMeters,, |
|
202 |
measurementAccuracy,, |
|
203 |
measurementDeterminedBy,, |
|
204 |
measurementDeterminedDate,, |
|
205 |
measurementID,, |
|
206 |
measurementMethod,, |
|
207 |
measurementRemarks,, |
|
208 |
measurementType,, |
|
209 |
measurementUnit,, |
|
210 |
measurementValue,, |
|
211 |
member,, |
|
212 |
minimumDistanceAboveSurfaceInMeters,, |
|
213 |
month,, |
|
214 |
municipality,, |
|
215 |
nameAccordingTo,, |
|
216 |
nameAccordingToID,, |
|
217 |
namePublishedIn,, |
|
218 |
namePublishedInID,, |
|
219 |
namePublishedInYear,, |
|
220 |
nomenclaturalCode,, |
|
221 |
nomenclaturalStatus,, |
|
222 |
occurrenceRemarks,, |
|
223 |
occurrenceStatus,, |
|
224 |
originalNameUsage,, |
|
225 |
originalNameUsageID,, |
|
226 |
otherCatalogNumbers,, |
|
227 |
ownerInstitutionCode,, |
|
228 |
parentNameUsage,, |
|
229 |
parentNameUsageID,, |
|
230 |
pointRadiusSpatialFit,, |
|
231 |
preparations,,Brad: OMIT |
|
232 |
previousIdentifications,,Brad: OMIT |
|
233 |
relatedResourceID,,Brad: OMIT |
|
234 |
relationshipAccordingTo,, |
|
235 |
relationshipEstablishedDate,, |
|
236 |
relationshipOfResource,,Brad: OMIT |
|
237 |
relationshipRemarks,, |
|
238 |
reproductiveCondition,, |
|
239 |
resourceID,, |
|
240 |
resourceRelationshipID,, |
|
241 |
samplingEffort,, |
|
242 |
scientificNameID,, |
|
243 |
startDayOfYear,, |
|
244 |
subgenus,, |
|
245 |
taxonConceptID,, |
|
246 |
taxonID,, |
|
247 |
taxonRank,, |
|
248 |
taxonomicStatus,, |
|
249 |
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN |
|
250 |
verbatimCoordinateSystem,, |
|
251 |
verbatimCoordinates,, |
|
252 |
verbatimDepth,, |
|
253 |
verbatimEventDate,, |
|
254 |
verbatimSRS,, |
|
255 |
verbatimTaxonRank,, |
|
256 |
vernacularName,, |
|
257 |
waterBody,, |
|
258 |
year,, |
Also available in: Unified diff
mappings/VegCSV-VegBIEN.specimens.csv: Added DwC mappings, to enable use of one VegCSV-VegBIEN mapping for specimens and plots data