Revision 4082
Added by Aaron Marcuse-Kubitza over 12 years ago
| DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
DwC,VegBIEN:,Comments |
| 2 |
plotArea,/location/area, |
|
| 3 |
plotName,/location/authorlocationcode/_alt/1, |
|
| 4 |
fieldNumber,/location/authorlocationcode/_alt/2, |
|
| 2 | 5 |
globalUniqueIdentifier,/location/authorlocationcode/_alt/3, |
| 3 | 6 |
id,/location/authorlocationcode/_alt/3, |
| 4 | 7 |
occurrenceID,/location/authorlocationcode/_alt/3, |
| 5 | 8 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1, |
| 6 | 9 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1, |
| 7 | 10 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2, |
| 11 |
voucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 8 | 12 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else", |
| 9 | 13 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 10 | 14 |
maximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 17 | 21 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
| 18 | 22 |
minimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
| 19 | 23 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
| 24 |
landform,/location/landform, |
|
| 20 | 25 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
| 21 | 26 |
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2, |
| 22 | 27 |
boundingBox,/location/locationdetermination/footprintgeometry_dwc, |
| ... | ... | |
| 34 | 39 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 35 | 40 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 36 | 41 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 42 |
projectName,/location/locationevent/*_id/project/projectname, |
|
| 43 |
projectID,/location/locationevent/*_id/project/sourceaccessioncode, |
|
| 37 | 44 |
fieldNumber,/location/locationevent/authoreventcode, |
| 45 |
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 46 |
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 47 |
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
|
| 38 | 48 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1, |
| 39 | 49 |
dateCollected/_alt,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt,Allow datasource to define custom dateCollected mappings that don't pass through the default dateCollected mapping |
| 40 | 50 |
dayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 42 | 52 |
yearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| 43 | 53 |
dateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/2, |
| 44 | 54 |
collectedDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/3, |
| 55 |
plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
|
| 45 | 56 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
| 46 | 57 |
dateCollected/_alt,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt,Allow datasource to define custom dateCollected mappings that don't pass through the default dateCollected mapping |
| 47 | 58 |
dayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 49 | 60 |
yearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| 50 | 61 |
dateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/2, |
| 51 | 62 |
collectedDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/3, |
| 63 |
precipitation,/location/locationevent/precipitation, |
|
| 64 |
acidity,/location/locationevent/soilobs/acidity, |
|
| 65 |
baseSaturation,/location/locationevent/soilobs/basesaturation, |
|
| 66 |
calcium,/location/locationevent/soilobs/calcium, |
|
| 67 |
carbon,/location/locationevent/soilobs/carbon, |
|
| 68 |
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity, |
|
| 69 |
clay,/location/locationevent/soilobs/clay, |
|
| 70 |
conductivity,/location/locationevent/soilobs/conductivity, |
|
| 71 |
magnesium,/location/locationevent/soilobs/magnesium, |
|
| 72 |
nitrogen,/location/locationevent/soilobs/nitrogen, |
|
| 73 |
organic,/location/locationevent/soilobs/organic, |
|
| 74 |
ph,/location/locationevent/soilobs/ph, |
|
| 75 |
phosphorus,/location/locationevent/soilobs/phosphorus, |
|
| 76 |
potassium,/location/locationevent/soilobs/potassium, |
|
| 77 |
sand,/location/locationevent/soilobs/sand, |
|
| 78 |
silt,/location/locationevent/soilobs/silt, |
|
| 79 |
sodium,/location/locationevent/soilobs/sodium, |
|
| 80 |
texture,/location/locationevent/soilobs/texture, |
|
| 52 | 81 |
dateCollected/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt,Allow datasource to define custom dateCollected mappings that don't pass through the default dateCollected mapping |
| 53 | 82 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 54 | 83 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 56 | 85 |
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
| 57 | 86 |
collectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
| 58 | 87 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 88 |
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
|
| 89 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 90 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover, |
|
| 59 | 91 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 60 | 92 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 61 | 93 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/1, |
| 62 | 94 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber/_alt/2, |
| 63 | 95 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 64 | 96 |
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 97 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 65 | 98 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 66 | 99 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 67 | 100 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
| ... | ... | |
| 69 | 102 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 70 | 103 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 71 | 104 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 105 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
|
| 106 |
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter, |
|
| 107 |
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 108 |
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 109 |
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 110 |
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 111 |
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 112 |
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight, |
|
| 113 |
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height, |
|
| 114 |
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch, |
|
| 115 |
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
|
| 116 |
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
|
| 117 |
relativePlotX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
|
| 118 |
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
|
| 72 | 119 |
collectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/1, |
| 73 | 120 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1/_alt/2, |
| 74 | 121 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2, |
| 122 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
|
| 75 | 123 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 76 | 124 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 77 | 125 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
| 126 |
computer.scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
| 127 |
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 128 |
computer.infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
| 129 |
computer.specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 130 |
computer.genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 131 |
computer.family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 78 | 132 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 79 | 133 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 80 | 134 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| ... | ... | |
| 102 | 156 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit, |
| 103 | 157 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 104 | 158 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 159 |
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first, |
|
| 160 |
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last, |
|
| 161 |
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 105 | 162 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 163 |
temperature,/location/locationevent/temperature, |
|
| 106 | 164 |
maximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 107 | 165 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 108 | 166 |
minimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 110 | 168 |
locality,/location/locationnarrative/_merge/1, |
| 111 | 169 |
verbatimLocality,/location/locationnarrative/_merge/2, |
| 112 | 170 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 171 |
plotNotes,/location/notespublic, |
|
| 172 |
parentPlotName,/location/parent_id/location/authorlocationcode, |
|
| 173 |
parentLocationID,/location/parent_id/location/sourceaccessioncode, |
|
| 174 |
slopeAspect,/location/slopeaspect/_compass/value, |
|
| 175 |
slopeGradient,/location/slopegradient, |
|
| 113 | 176 |
locationID,/location/sourceaccessioncode, |
| 114 | 177 |
acceptedNameUsage,, |
| 115 | 178 |
acceptedNameUsageID,, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Added VegCSV mappings, to enable use of one VegCSV-VegBIEN mapping for specimens and plots data