Revision 4082
Added by Aaron Marcuse-Kubitza over 12 years ago
| DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
DwC,VegBIEN:,Comments |
| 2 |
plotArea,/location/area, |
|
| 3 |
plotName,/location/authorlocationcode/_alt/1, |
|
| 4 |
fieldNumber,/location/authorlocationcode/_alt/2, |
|
| 2 | 5 |
occurrenceID,/location/authorlocationcode/_alt/3, |
| 3 | 6 |
institutionCode,/location/authorlocationcode/_alt/4/_merge/1, |
| 4 | 7 |
collectionCode,/location/authorlocationcode/_alt/4/_merge/2/_merge/1, |
| 5 | 8 |
collectionID,/location/authorlocationcode/_alt/4/_merge/2/_merge/2, |
| 9 |
voucherType,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 6 | 10 |
catalogNumber,"/location/authorlocationcode/_alt/4/_merge/3/_if[@name=""if indirect voucher""]/else", |
| 7 | 11 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
| 8 | 12 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| ... | ... | |
| 10 | 14 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
| 11 | 15 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
| 12 | 16 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
| 17 |
landform,/location/landform, |
|
| 13 | 18 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
| 14 | 19 |
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2, |
| 15 | 20 |
footprintWKT,/location/locationdetermination/footprintgeometry_dwc, |
| ... | ... | |
| 22 | 27 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 23 | 28 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 24 | 29 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 30 |
projectName,/location/locationevent/*_id/project/projectname, |
|
| 31 |
projectID,/location/locationevent/*_id/project/sourceaccessioncode, |
|
| 25 | 32 |
fieldNumber,/location/locationevent/authoreventcode, |
| 33 |
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 34 |
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 35 |
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
|
| 26 | 36 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1, |
| 27 | 37 |
dateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2, |
| 38 |
plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
|
| 28 | 39 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
| 29 | 40 |
dateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2, |
| 41 |
precipitation,/location/locationevent/precipitation, |
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| 42 |
acidity,/location/locationevent/soilobs/acidity, |
|
| 43 |
baseSaturation,/location/locationevent/soilobs/basesaturation, |
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| 44 |
calcium,/location/locationevent/soilobs/calcium, |
|
| 45 |
carbon,/location/locationevent/soilobs/carbon, |
|
| 46 |
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity, |
|
| 47 |
clay,/location/locationevent/soilobs/clay, |
|
| 48 |
conductivity,/location/locationevent/soilobs/conductivity, |
|
| 49 |
magnesium,/location/locationevent/soilobs/magnesium, |
|
| 50 |
nitrogen,/location/locationevent/soilobs/nitrogen, |
|
| 51 |
organic,/location/locationevent/soilobs/organic, |
|
| 52 |
ph,/location/locationevent/soilobs/ph, |
|
| 53 |
phosphorus,/location/locationevent/soilobs/phosphorus, |
|
| 54 |
potassium,/location/locationevent/soilobs/potassium, |
|
| 55 |
sand,/location/locationevent/soilobs/sand, |
|
| 56 |
silt,/location/locationevent/soilobs/silt, |
|
| 57 |
sodium,/location/locationevent/soilobs/sodium, |
|
| 58 |
texture,/location/locationevent/soilobs/texture, |
|
| 30 | 59 |
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date, |
| 31 | 60 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 61 |
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
|
| 62 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 63 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover, |
|
| 32 | 64 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 33 | 65 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
| 34 | 66 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 35 | 67 |
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 68 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 36 | 69 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 37 | 70 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 38 | 71 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
| 39 | 72 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 40 | 73 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 74 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
|
| 75 |
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter, |
|
| 76 |
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 77 |
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 78 |
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 79 |
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 80 |
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 81 |
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight, |
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| 82 |
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height, |
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| 83 |
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch, |
|
| 84 |
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
|
| 85 |
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
|
| 86 |
relativePlotX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
|
| 87 |
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
|
| 41 | 88 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1, |
| 42 | 89 |
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2, |
| 90 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
|
| 43 | 91 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 44 | 92 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 45 | 93 |
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode, |
| 94 |
computer.scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
| 95 |
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 96 |
computer.infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
| 97 |
computer.specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 98 |
computer.genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 99 |
computer.family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 46 | 100 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 47 | 101 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 48 | 102 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| ... | ... | |
| 60 | 114 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes, |
| 61 | 115 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit, |
| 62 | 116 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 117 |
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first, |
|
| 118 |
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last, |
|
| 119 |
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 63 | 120 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 121 |
temperature,/location/locationevent/temperature, |
|
| 64 | 122 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 65 | 123 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
| 66 | 124 |
locality,/location/locationnarrative/_merge/1, |
| 67 | 125 |
verbatimLocality,/location/locationnarrative/_merge/2, |
| 68 | 126 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 127 |
plotNotes,/location/notespublic, |
|
| 128 |
parentPlotName,/location/parent_id/location/authorlocationcode, |
|
| 129 |
parentLocationID,/location/parent_id/location/sourceaccessioncode, |
|
| 130 |
slopeAspect,/location/slopeaspect/_compass/value, |
|
| 131 |
slopeGradient,/location/slopegradient, |
|
| 69 | 132 |
locationID,/location/sourceaccessioncode, |
| 70 | 133 |
acceptedNameUsage,, |
| 71 | 134 |
acceptedNameUsageID,, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Added VegCSV mappings, to enable use of one VegCSV-VegBIEN mapping for specimens and plots data