Revision 4082
Added by Aaron Marcuse-Kubitza over 12 years ago
| DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
DwC,VegBIEN:,Comments |
| 2 |
plotArea,//location/area, |
|
| 3 |
plotName,//location/authorlocationcode, |
|
| 4 |
fieldNumber,//location/authorlocationcode, |
|
| 2 | 5 |
occurrenceID,//location/authorlocationcode, |
| 3 | 6 |
institutionCode,//location/authorlocationcode, |
| 4 | 7 |
collectionCode,//location/authorlocationcode, |
| 5 | 8 |
collectionID,//location/authorlocationcode, |
| 9 |
voucherType,"//location/authorlocationcode/_if[@name=""if indirect voucher""]/cond", |
|
| 6 | 10 |
catalogNumber,"//location/authorlocationcode/_if[@name=""if indirect voucher""]/else", |
| 7 | 11 |
verbatimElevation,//location/elevation, |
| 8 | 12 |
maximumElevationInMeters,//location/elevation, |
| ... | ... | |
| 10 | 14 |
minimumElevationInMeters,//location/elevationrange, |
| 11 | 15 |
maximumElevationInMeters,//location/elevationrange, |
| 12 | 16 |
minimumElevationInMeters,//location/elevationrange, |
| 17 |
landform,//location/landform, |
|
| 13 | 18 |
coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy, |
| 14 | 19 |
coordinatePrecision,//locationdetermination/coordsaccuracy, |
| 15 | 20 |
footprintWKT,//locationdetermination/footprintgeometry_dwc, |
| ... | ... | |
| 22 | 27 |
country,//locationdetermination/namedplace_id[rank=country]/placename, |
| 23 | 28 |
continent,//locationdetermination/namedplace_id[rank=continent]/placename, |
| 24 | 29 |
samplingProtocol,//method/name, |
| 30 |
projectName,//project/projectname, |
|
| 31 |
projectID,//project/sourceaccessioncode, |
|
| 25 | 32 |
fieldNumber,//locationevent/authoreventcode, |
| 33 |
communityID,//*/commname, |
|
| 34 |
communityName,//commconcept/commdescription, |
|
| 35 |
plotEventEndDate,//locationevent/obsenddate/_*/date, |
|
| 26 | 36 |
eventDate,//locationevent/obsenddate/_*/date, |
| 27 | 37 |
dateCollected,//locationevent/obsenddate/_*/date, |
| 38 |
plotEventStartDate,//locationevent/obsstartdate/_*/date, |
|
| 28 | 39 |
eventDate,//locationevent/obsstartdate/_*/date, |
| 29 | 40 |
dateCollected,//locationevent/obsstartdate/_*/date, |
| 41 |
precipitation,//locationevent/precipitation, |
|
| 42 |
acidity,//soilobs/acidity, |
|
| 43 |
baseSaturation,//soilobs/basesaturation, |
|
| 44 |
calcium,//soilobs/calcium, |
|
| 45 |
carbon,//soilobs/carbon, |
|
| 46 |
cationExchangeCapacity,//soilobs/cationexchangecapacity, |
|
| 47 |
clay,//soilobs/clay, |
|
| 48 |
conductivity,//soilobs/conductivity, |
|
| 49 |
magnesium,//soilobs/magnesium, |
|
| 50 |
nitrogen,//soilobs/nitrogen, |
|
| 51 |
organic,//soilobs/organic, |
|
| 52 |
ph,//soilobs/ph, |
|
| 53 |
phosphorus,//soilobs/phosphorus, |
|
| 54 |
potassium,//soilobs/potassium, |
|
| 55 |
sand,//soilobs/sand, |
|
| 56 |
silt,//soilobs/silt, |
|
| 57 |
sodium,//soilobs/sodium, |
|
| 58 |
texture,//soilobs/texture, |
|
| 30 | 59 |
dateCollected,//aggregateoccurrence/collectiondate/_*/date, |
| 31 | 60 |
individualCount,//aggregateoccurrence/count, |
| 61 |
coverPercent,//aggregateoccurrence/cover, |
|
| 62 |
censusNumber,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue", |
|
| 63 |
volumeCanopy,//aggregateoccurrence/linecover, |
|
| 32 | 64 |
fieldNotes,//aggregateoccurrence/notes, |
| 33 | 65 |
recordNumber,//plantobservation/collectionnumber, |
| 34 | 66 |
sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 35 | 67 |
individualID,//plantobservation/sourceaccessioncode, |
| 68 |
voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond", |
|
| 36 | 69 |
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 37 | 70 |
collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 38 | 71 |
collectionID,//specimenreplicate/collectioncode_dwc, |
| 39 | 72 |
institutionCode,//party/organizationname, |
| 40 | 73 |
occurrenceID,//specimenreplicate/sourceaccessioncode, |
| 74 |
stemCount,//plantobservation/stemcount, |
|
| 75 |
basalDiameter,//stemobservation/basaldiameter, |
|
| 76 |
canopyForm,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue", |
|
| 77 |
canopyPosition,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue", |
|
| 78 |
diameterBreastHeightGentry,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue", |
|
| 79 |
lianaInfestation,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]/definedvalue", |
|
| 80 |
stemNotes,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]/definedvalue", |
|
| 81 |
diameterBreastHeight,//stemobservation/diameterbreastheight, |
|
| 82 |
height,//stemobservation/height, |
|
| 83 |
heightFirstBranch,//stemobservation/heightfirstbranch, |
|
| 84 |
tag,"//stemobservation/stemtag[""""/iscurrent=true]/tag",Quotes sort it before tag2 |
|
| 85 |
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag:[../stemtag?[iscurrent=true]/iscurrent=false]/tag, |
|
| 86 |
relativePlotX,//stemobservation/xposition, |
|
| 87 |
relativePlotY,//stemobservation/yposition, |
|
| 41 | 88 |
recordNumber,//taxonoccurrence/authortaxoncode, |
| 42 | 89 |
scientificName,//taxonoccurrence/authortaxoncode, |
| 90 |
growthForm,//taxonoccurrence/growthform, |
|
| 43 | 91 |
establishmentMeans,//taxonoccurrence/iscultivated, |
| 44 | 92 |
establishmentMeans,//taxonoccurrence/isnative, |
| 45 | 93 |
individualID,//taxonoccurrence/sourceaccessioncode, |
| 94 |
computer.scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname, |
|
| 95 |
computer.taxonRank,//plantconcept/plantname_id[rank=subspecies]/plantname, |
|
| 96 |
computer.infraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname, |
|
| 97 |
computer.specificEpithet,//plantconcept/plantname_id[rank=species]/plantname, |
|
| 98 |
computer.genus,//plantconcept/plantname_id[rank=genus]/plantname, |
|
| 99 |
computer.family,//plantconcept/plantname_id[rank=family]/plantname, |
|
| 46 | 100 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname, |
| 47 | 101 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename, |
| 48 | 102 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname, |
| ... | ... | |
| 60 | 114 |
taxonRemarks,//taxonoccurrence/taxondetermination[role=identifier]/notes, |
| 61 | 115 |
identificationQualifier,//taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
| 62 | 116 |
recordedBy,//taxonoccurrence/verbatimcollectorname, |
| 117 |
recordedBy.givenName,//taxonoccurrence/verbatimcollectorname, |
|
| 118 |
recordedBy.surName,//taxonoccurrence/verbatimcollectorname, |
|
| 119 |
voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond", |
|
| 63 | 120 |
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 121 |
temperature,//locationevent/temperature, |
|
| 64 | 122 |
maximumDepthInMeters,//locationevent/waterdepth, |
| 65 | 123 |
minimumDepthInMeters,//locationevent/waterdepth, |
| 66 | 124 |
locality,//location/locationnarrative, |
| 67 | 125 |
verbatimLocality,//location/locationnarrative, |
| 68 | 126 |
habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 127 |
plotNotes,//location/notespublic, |
|
| 128 |
parentPlotName,//location/authorlocationcode, |
|
| 129 |
parentLocationID,//location/sourceaccessioncode, |
|
| 130 |
slopeAspect,//location/slopeaspect, |
|
| 131 |
slopeGradient,//location/slopegradient, |
|
| 69 | 132 |
locationID,//location/sourceaccessioncode, |
| 70 | 133 |
acceptedNameUsage,, |
| 71 | 134 |
acceptedNameUsageID,, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Added VegCSV mappings, to enable use of one VegCSV-VegBIEN mapping for specimens and plots data