|
1
|
VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
|
2
|
subplotID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/1",
|
|
3
|
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
|
|
4
|
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
5
|
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
6
|
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
7
|
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
|
8
|
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
|
|
9
|
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
|
|
10
|
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
|
|
11
|
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
12
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
13
|
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
|
|
14
|
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
|
|
15
|
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
|
|
16
|
plotArea,/location/area,
|
|
17
|
subplot,/location/authorlocationcode,
|
|
18
|
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
|
|
19
|
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
|
|
20
|
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
|
|
21
|
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
|
|
22
|
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
|
|
23
|
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
|
|
24
|
landform,/location/landform,
|
|
25
|
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
|
|
26
|
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
|
|
27
|
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,
|
|
28
|
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
|
|
29
|
verbatimLatitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
|
|
30
|
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
|
|
31
|
verbatimLongitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
|
|
32
|
county,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
|
|
33
|
stateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
|
|
34
|
country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
|
|
35
|
continent,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
|
|
36
|
samplingProtocol,/location/locationevent/*_id/method/name,
|
|
37
|
projectName,/location/locationevent/*_id/project/projectname,
|
|
38
|
projectID,/location/locationevent/*_id/project/sourceaccessioncode,
|
|
39
|
subplotID,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/1",
|
|
40
|
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
|
|
41
|
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
|
|
42
|
eventID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
|
|
43
|
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1",
|
|
44
|
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/2",
|
|
45
|
plotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
|
|
46
|
locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
|
|
47
|
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
|
|
48
|
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
|
|
49
|
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
|
|
50
|
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
|
|
51
|
endDate,/location/locationevent/obsenddate/_*/date/_alt/1,
|
|
52
|
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
53
|
startDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
54
|
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
55
|
precipitation,/location/locationevent/precipitation,
|
|
56
|
acidity,/location/locationevent/soilobs/acidity,
|
|
57
|
baseSaturation,/location/locationevent/soilobs/basesaturation,
|
|
58
|
calcium,/location/locationevent/soilobs/calcium,
|
|
59
|
carbon,/location/locationevent/soilobs/carbon,
|
|
60
|
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity,
|
|
61
|
clay,/location/locationevent/soilobs/clay,
|
|
62
|
conductivity,/location/locationevent/soilobs/conductivity,
|
|
63
|
magnesium,/location/locationevent/soilobs/magnesium,
|
|
64
|
nitrogen,/location/locationevent/soilobs/nitrogen,
|
|
65
|
organic,/location/locationevent/soilobs/organic,
|
|
66
|
ph,/location/locationevent/soilobs/ph,
|
|
67
|
phosphorus,/location/locationevent/soilobs/phosphorus,
|
|
68
|
potassium,/location/locationevent/soilobs/potassium,
|
|
69
|
sand,/location/locationevent/soilobs/sand,
|
|
70
|
silt,/location/locationevent/soilobs/silt,
|
|
71
|
sodium,/location/locationevent/soilobs/sodium,
|
|
72
|
texture,/location/locationevent/soilobs/texture,
|
|
73
|
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
|
|
74
|
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
75
|
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
76
|
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
77
|
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
|
|
78
|
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
|
|
79
|
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
|
|
80
|
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,
|
|
81
|
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
|
|
82
|
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
|
|
83
|
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
|
|
84
|
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
|
|
85
|
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
86
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
87
|
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
88
|
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
|
89
|
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
|
|
90
|
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
|
91
|
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
|
|
92
|
authorStemCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode,
|
|
93
|
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter,
|
|
94
|
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
|
|
95
|
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
|
|
96
|
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
|
|
97
|
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
|
|
98
|
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
|
|
99
|
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,
|
|
100
|
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height,
|
|
101
|
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch,
|
|
102
|
stemID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
|
|
103
|
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
|
|
104
|
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
|
|
105
|
organismX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,
|
|
106
|
organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
|
|
107
|
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,
|
|
108
|
verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1,
|
|
109
|
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
|
|
110
|
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
|
|
111
|
growthForm,/location/locationevent/taxonoccurrence/growthform,
|
|
112
|
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
|
113
|
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,
|
|
114
|
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
|
|
115
|
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
|
|
116
|
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,
|
|
117
|
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,
|
|
118
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
|
|
119
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
|
|
120
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
|
|
121
|
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/class,
|
|
122
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/family,
|
|
123
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/genus,
|
|
124
|
kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/kingdom,
|
|
125
|
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/order,
|
|
126
|
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/phylum,
|
|
127
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificname,
|
|
128
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificnameauthor,
|
|
129
|
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificnamewithauthor,
|
|
130
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/species,
|
|
131
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/subspecies/_name/first,
|
|
132
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/subspecies/_name/last,
|
|
133
|
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
134
|
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
135
|
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
136
|
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
137
|
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
|
|
138
|
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
|
|
139
|
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/class,
|
|
140
|
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/family,
|
|
141
|
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/genus,
|
|
142
|
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/kingdom,
|
|
143
|
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/order,
|
|
144
|
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/phylum,
|
|
145
|
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/scientificname,
|
|
146
|
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/scientificnameauthor,
|
|
147
|
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/species,
|
|
148
|
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/subspecies,
|
|
149
|
verbatimIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
|
|
150
|
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
|
|
151
|
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,
|
|
152
|
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,
|
|
153
|
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
|
|
154
|
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
|
155
|
temperature,/location/locationevent/temperature,
|
|
156
|
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
|
|
157
|
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
|
|
158
|
locality,/location/locationnarrative/_merge/1,
|
|
159
|
verbatimLocality,/location/locationnarrative/_merge/2,
|
|
160
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
|
161
|
plotNotes,/location/notespublic,
|
|
162
|
slopeAspect,/location/slopeaspect/_alt/1/_compass/value,
|
|
163
|
maxSlopeAspect,/location/slopeaspect/_alt/2/_avg/max,
|
|
164
|
minSlopeAspect,/location/slopeaspect/_alt/2/_avg/min,
|
|
165
|
slopeGradient,/location/slopegradient/_alt/1,
|
|
166
|
maxSlopeGradient,/location/slopegradient/_alt/2/_avg/max,
|
|
167
|
minSlopeGradient,/location/slopegradient/_alt/2/_avg/min,
|
|
168
|
subplotID,/location/sourceaccessioncode,
|
|
169
|
subplotX,/location/sublocationxposition,
|
|
170
|
subplotY,/location/sublocationyposition,
|
