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Revision 4786

Added by Aaron Marcuse-Kubitza almost 12 years ago

schemas/vegbien.sql: Changed _frac units suffix to _fraction for clarity and for consistency with _percent (which is spelled out), as used by SALVIAS (http://salvias.net/Documents/salvias_data_dictionary.html) and elsewhere

View differences:

VegBIEN.csv
22 22 
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
23 23 
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
24 24 
precip_mm,/location/locationevent/precipitation_m,
25 
soil_acidity,"/location/locationevent/soilobs/acidity_frac/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
26 
soil_base,"/location/locationevent/soilobs/basesaturation_frac/_units:[default=""%"",to=]/value",
27 
soil_Ca,"/location/locationevent/soilobs/calcium_frac/_units:[default=""%"",to=]/value",
28 
soil_C,"/location/locationevent/soilobs/carbon_frac/_units:[default=""%"",to=]/value",
25 
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
26 
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_units:[default=""%"",to=]/value",
27 
soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_units:[default=""%"",to=]/value",
28 
soil_C,"/location/locationevent/soilobs/carbon_fraction/_units:[default=""%"",to=]/value",
29 29 
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
30 
clay_percent,"/location/locationevent/soilobs/clay_frac/_units:[default=""%"",to=]/value",
30 
clay_percent,"/location/locationevent/soilobs/clay_fraction/_units:[default=""%"",to=]/value",
31 31 
soil_conductivity,/location/locationevent/soilobs/conductivity,
32 
soil_Mg,"/location/locationevent/soilobs/magnesium_frac/_units:[default=""%"",to=]/value",
33 
soil_N,"/location/locationevent/soilobs/nitrogen_frac/_units:[default=""%"",to=]/value",
34 
organic_percent,"/location/locationevent/soilobs/organic_frac/_units:[default=""%"",to=]/value",
32 
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_units:[default=""%"",to=]/value",
33 
soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_units:[default=""%"",to=]/value",
34 
organic_percent,"/location/locationevent/soilobs/organic_fraction/_units:[default=""%"",to=]/value",
35 35 
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
36 
soil_P,"/location/locationevent/soilobs/phosphorus_frac/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
37 
soil_K,"/location/locationevent/soilobs/potassium_frac/_units:[default=""%"",to=]/value",
38 
sand_percent,"/location/locationevent/soilobs/sand_frac/_units:[default=""%"",to=]/value",
39 
silt_percent,"/location/locationevent/soilobs/silt_frac/_units:[default=""%"",to=]/value",
40 
soil_Na,"/location/locationevent/soilobs/sodium_frac/_units:[default=""%"",to=]/value",
36 
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
37 
soil_K,"/location/locationevent/soilobs/potassium_fraction/_units:[default=""%"",to=]/value",
38 
sand_percent,"/location/locationevent/soilobs/sand_fraction/_units:[default=""%"",to=]/value",
39 
silt_percent,"/location/locationevent/soilobs/silt_fraction/_units:[default=""%"",to=]/value",
40 
soil_Na,"/location/locationevent/soilobs/sodium_fraction/_units:[default=""%"",to=]/value",
41 41 
soil_texture,/location/locationevent/soilobs/texture,
42 42 
temp_c,/location/locationevent/temperature_c,
43 43 
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
......
46 46 
pol2,/location/locationplace/*_id/placepath/county,Brad: No pol2=countyParish
47 47 
pol1,/location/locationplace/*_id/placepath/stateprovince,Brad: No; pol1=stateProvince
48 48 
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value,
49 
slope_gradient,/location/slopegradient_frac/_alt/1,
49 
slope_gradient,/location/slopegradient_fraction/_alt/1,
50 50 
observation_type,,"** No join mapping for observation_type ** Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
51 51 
recensused,,"** No join mapping for recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"

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