Project

General

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1 4686 aaronmk
VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 4337 aaronmk
subplotID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/1",
3
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
4 4336 aaronmk
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
5
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
6
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
7
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
8
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
9
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
10
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
11
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
12
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
13 4324 aaronmk
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
14
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
15
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
16 4770 aaronmk
plotArea_m2,/location/area_m2,
17 4768 aaronmk
plotArea_ha,/location/area_m2/_ha_to_m2/value,
18 4333 aaronmk
subplot,/location/authorlocationcode,
19 4796 aaronmk
elevationInMeters,/location/elevation_m/_alt/1,
20 4818 aaronmk
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
21 4820 aaronmk
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,
22 4804 aaronmk
verbatimElevation_m,/location/elevation_m/_alt/2/_avg/max/_rangeEnd/value,
23 4822 aaronmk
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,
24 4804 aaronmk
verbatimElevation_m,/location/elevation_m/_alt/2/_avg/min/_rangeStart/value,
25 4805 aaronmk
verbatimElevation_m,/location/elevationrange_m/_range/from/_rangeStart/value,
26
verbatimElevation_m,/location/elevationrange_m/_range/to/_rangeEnd/value,
27 4082 aaronmk
landform,/location/landform,
28 4753 aaronmk
coordinateUncertaintyInMeters,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1,
29
coordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2,
30 4726 aaronmk
footprintWKT,/location/locationcoords/footprintgeometry_dwc,
31 4753 aaronmk
decimalLatitude,"/location/locationcoords/latitude_deg/_alt/1/_nullIf:[null=0,type=float]/value",
32
verbatimLatitude,"/location/locationcoords/latitude_deg/_alt/2/_nullIf:[null=0,type=float]/value",
33
decimalLongitude,"/location/locationcoords/longitude_deg/_alt/1/_nullIf:[null=0,type=float]/value",
34
verbatimLongitude,"/location/locationcoords/longitude_deg/_alt/2/_nullIf:[null=0,type=float]/value",
35 3996 aaronmk
samplingProtocol,/location/locationevent/*_id/method/name,
36 4082 aaronmk
projectName,/location/locationevent/*_id/project/projectname,
37
projectID,/location/locationevent/*_id/project/sourceaccessioncode,
38 4340 aaronmk
subplotID,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/1",
39
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
40
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
41
eventID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
42 4458 aaronmk
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1",
43
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/2",
44
plotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
45
locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
46
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
47
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
48 4082 aaronmk
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
49
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
50 4563 aaronmk
endDate,/location/locationevent/obsenddate/_*/date/_alt/1,
51
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
52
startDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
53
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
54 4753 aaronmk
precipitation,/location/locationevent/precipitation_m,
55 4786 aaronmk
acidity,/location/locationevent/soilobs/acidity_fraction,
56
baseSaturation,/location/locationevent/soilobs/basesaturation_fraction,
57
calcium,/location/locationevent/soilobs/calcium_fraction,
58
carbon,/location/locationevent/soilobs/carbon_fraction,
59 4754 aaronmk
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
60 4786 aaronmk
clay,/location/locationevent/soilobs/clay_fraction,
61 4082 aaronmk
conductivity,/location/locationevent/soilobs/conductivity,
62 4786 aaronmk
magnesium,/location/locationevent/soilobs/magnesium_fraction,
63
nitrogen,/location/locationevent/soilobs/nitrogen_fraction,
64
organic,/location/locationevent/soilobs/organic_fraction,
65 4082 aaronmk
ph,/location/locationevent/soilobs/ph,
66 4786 aaronmk
phosphorus,/location/locationevent/soilobs/phosphorus_fraction,
67
potassium,/location/locationevent/soilobs/potassium_fraction,
68
sand,/location/locationevent/soilobs/sand_fraction,
69
silt,/location/locationevent/soilobs/silt_fraction,
70
sodium,/location/locationevent/soilobs/sodium_fraction,
71 4082 aaronmk
texture,/location/locationevent/soilobs/texture,
72 4566 aaronmk
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
73
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
74
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
75
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
76 3982 aaronmk
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
77 4789 aaronmk
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
78 4082 aaronmk
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
79 4781 aaronmk
intercept_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m,
80 4784 aaronmk
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value,
81 3969 aaronmk
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
82 4076 aaronmk
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
83 3969 aaronmk
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
84 4075 aaronmk
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
85 4082 aaronmk
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
86 4057 aaronmk
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
87 4327 aaronmk
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
88
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
89 3969 aaronmk
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
90
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
91 4082 aaronmk
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
92 4364 aaronmk
authorStemCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode,
93 4753 aaronmk
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m,
94 4082 aaronmk
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
95
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
96
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
97
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
98
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
99 4753 aaronmk
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m,
100
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,
101
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch_m,
102 4359 aaronmk
stemID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
103 4828 aaronmk
tag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag,
104 4753 aaronmk
organismX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,
105
organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,
106 4073 aaronmk
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,
107 4194 aaronmk
verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1,
108 4707 aaronmk
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
109
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
110 4082 aaronmk
growthForm,/location/locationevent/taxonoccurrence/growthform,
111 4559 aaronmk
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
112 4554 aaronmk
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,
113
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
114 3969 aaronmk
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
115 4371 aaronmk
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,
116
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,
117 4205 aaronmk
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
118
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
119
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
120 4718 aaronmk
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class,
121 4744 aaronmk
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/cultivar,
122 4718 aaronmk
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
123 4744 aaronmk
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/forma,
124 4718 aaronmk
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
125
kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/kingdom,
126
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order,
127
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/phylum,
128
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificname,
129
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnameauthor,
130
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnamewithauthor,
131
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
132 4749 aaronmk
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1,
133
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_name/first,
134
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_name/last,
135 4744 aaronmk
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety,
136 4560 aaronmk
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
137
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
138
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
139
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
140 4205 aaronmk
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
141
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
142 4718 aaronmk
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/class,
143
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,
144
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus,
145
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/kingdom,
146
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/order,
147
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/phylum,
148
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificname,
149
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificnameauthor,
150
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,
151
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies,
152 4193 aaronmk
verbatimIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
153 3969 aaronmk
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
154 4082 aaronmk
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,
155
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,
156
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
157 4079 aaronmk
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
158 4753 aaronmk
temperature,/location/locationevent/temperature_c,
159 4820 aaronmk
maximumDepthInMeters,/location/locationevent/waterdepth_m/_avg/max,
160
minimumDepthInMeters,/location/locationevent/waterdepth_m/_avg/min,
161 3969 aaronmk
locality,/location/locationnarrative/_merge/1,
162
verbatimLocality,/location/locationnarrative/_merge/2,
163
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
164 4727 aaronmk
continent,/location/locationplace/*_id/placepath/continent,
165
country,/location/locationplace/*_id/placepath/country,
166
county,/location/locationplace/*_id/placepath/county,
167
stateProvince,/location/locationplace/*_id/placepath/stateprovince,
168 4082 aaronmk
plotNotes,/location/notespublic,
169 4753 aaronmk
slopeAspect,/location/slopeaspect_deg/_alt/1/_compass/value,
170
maxSlopeAspect,/location/slopeaspect_deg/_alt/2/_avg/max,
171
minSlopeAspect,/location/slopeaspect_deg/_alt/2/_avg/min,
172 4786 aaronmk
slopeGradient,/location/slopegradient_fraction/_alt/1,
173
maxSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/max,
174
minSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/min,
175 4286 aaronmk
subplotID,/location/sourceaccessioncode,
176 4753 aaronmk
subplotX,/location/sublocationxposition_m,
177
subplotY,/location/sublocationyposition_m,
178 4818 aaronmk
verbatimElevation,/location/verbatimelevation,
179 4806 aaronmk
verbatimElevation_m,/location/verbatimelevation,