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Revision 4857

input.Makefile: Maps validation: %/new_terms.csv: Include the entire map spreadsheet row, so that each new term is listed together with its mapping. This facilitates adding new mappings to mappings/Veg+-VegCore.csv directly from any new_terms.csv. Note that the use of `sort -u` (in lib/mappings.Makefile) causes multiline comments to be separated, leading to spurious lines for each multiline comment line.

View differences:

new_terms.csv
1
dwc_dwcore_GlobalUniqueIdentifier
2
dwc_dwcore_DateLastModified
3
dwc_dwcore_BasisOfRecord
4
dwc_dwcore_InstitutionCode
5
dwc_dwcore_CollectionCode
6
dwc_dwcore_CatalogNumber
7
dwc_dwcore_Remarks
8
dwc_dwcore_ScientificName
9
dwc_dwcore_Kingdom
10
dwc_dwcore_Phylum
11
dwc_dwcore_Class
12
dwc_dwcore_Order
13
dwc_dwcore_Family
14
dwc_dwcore_Genus
15
dwc_dwcore_SpecificEpithet
16
dwc_dwcore_InfraspecificEpithet
17
dwc_dwcore_AuthorYearOfScientificName
18
dwc_dwcore_Continent
19
dwc_dwcore_Country
20
dwc_dwcore_StateProvince
21
dwc_dwcore_County
22
dwc_dwcore_Locality
23
dwc_dwcore_MinimumElevationInMeters
24
dwc_dwcore_MaximumElevationInMeters
25
dwc_dwcore_MinimumDepthInMeters
26
dwc_dwcore_MaximumDepthInMeters
27
dwc_dwcore_DayOfYear
28
dwc_dwcore_Collector
29
dwc_dwcore_Sex
30
dwc_curatorial_IdentifiedBy
31
dwc_curatorial_CollectorNumber
32
dwc_curatorial_FieldNumber
33
dwc_curatorial_TypeStatus
34
dwc_curatorial_IndividualCount
35
dwc_geospatial_DecimalLatitude
36
dwc_geospatial_DecimalLongitude
37
dwc_geospatial_VerbatimLatitude
38
dwc_geospatial_VerbatimLongitude
39
http__purl_org_dc_terms_modified
40
dwc_terms_collectionID
41
dwc_terms_institutionCode
42
dwc_terms_collectionCode
43
dwc_terms_basisOfRecord
44
dwc_terms_identifiedBy
45
dwc_terms_dateIdentified
46
dwc_terms_typeStatus
47
dwc_terms_catalogNumber
48
dwc_terms_occurrenceRemarks
49
dwc_terms_recordNumber
50
dwc_terms_recordedBy
51
dwc_terms_individualCount
52
dwc_terms_sex
53
dwc_terms_preparations
54
dwc_terms_otherCatalogNumbers
55
dwc_terms_eventTime
56
dwc_terms_startDayOfYear
57
dwc_terms_endDayOfYear
58
dwc_terms_year
59
dwc_terms_month
60
dwc_terms_day
61
dwc_terms_fieldNumber
62
dwc_terms_continent
63
dwc_terms_country
64
dwc_terms_stateProvince
65
dwc_terms_county
66
dwc_terms_locality
67
dwc_terms_minimumElevationInMeters
68
dwc_terms_maximumElevationInMeters
69
dwc_terms_minimumDepthInMeters
70
dwc_terms_maximumDepthInMeters
71
dwc_terms_verbatimLatitude
72
dwc_terms_verbatimLongitude
73
dwc_terms_decimalLatitude
74
dwc_terms_decimalLongitude
75
dwc_terms_coordinateUncertaintyInMeters
76
dwc_terms_scientificName
77
dwc_terms_kingdom
78
dwc_terms_phylum
79
dwc_terms_class
80
dwc_terms_order
81
dwc_terms_family
82
dwc_terms_genus
83
dwc_terms_specificEpithet
84
dwc_terms_infraspecificEpithet
85
dwc_terms_scientificNameAuthorship
86
conceptual_darwin_2003_1_0_DateLastModified
87
conceptual_darwin_2003_1_0_InstitutionCode
88
conceptual_darwin_2003_1_0_CollectionCode
89
conceptual_darwin_2003_1_0_CatalogNumber
90
conceptual_darwin_2003_1_0_ScientificName
91
conceptual_darwin_2003_1_0_BasisOfRecord
92
conceptual_darwin_2003_1_0_Kingdom
93
conceptual_darwin_2003_1_0_Phylum
94
conceptual_darwin_2003_1_0_Class
95
conceptual_darwin_2003_1_0_Order
96
conceptual_darwin_2003_1_0_Family
97
conceptual_darwin_2003_1_0_Genus
98
conceptual_darwin_2003_1_0_Species
99
conceptual_darwin_2003_1_0_Subspecies
100
conceptual_darwin_2003_1_0_ScientificNameAuthor
101
conceptual_darwin_2003_1_0_IdentifiedBy
102
conceptual_darwin_2003_1_0_YearIdentified
103
conceptual_darwin_2003_1_0_MonthIdentified
104
conceptual_darwin_2003_1_0_DayIdentified
105
conceptual_darwin_2003_1_0_TypeStatus
106
conceptual_darwin_2003_1_0_CollectorNumber
107
conceptual_darwin_2003_1_0_FieldNumber
108
conceptual_darwin_2003_1_0_Collector
109
conceptual_darwin_2003_1_0_YearCollected
110
conceptual_darwin_2003_1_0_MonthCollected
111
conceptual_darwin_2003_1_0_DayCollected
112
conceptual_darwin_2003_1_0_JulianDay
113
conceptual_darwin_2003_1_0_TimeOfDay
114
conceptual_darwin_2003_1_0_ContinentOcean
115
conceptual_darwin_2003_1_0_Country
116
conceptual_darwin_2003_1_0_StateProvince
117
conceptual_darwin_2003_1_0_County
118
conceptual_darwin_2003_1_0_Locality
119
conceptual_darwin_2003_1_0_Longitude
120
conceptual_darwin_2003_1_0_Latitude
121
conceptual_darwin_2003_1_0_CoordinatePrecision
122
conceptual_darwin_2003_1_0_BoundingBox
123
conceptual_darwin_2003_1_0_MinimumElevation
124
conceptual_darwin_2003_1_0_MaximumElevation
125
conceptual_darwin_2003_1_0_MinimumDepth
126
conceptual_darwin_2003_1_0_MaximumDepth
127
conceptual_darwin_2003_1_0_Sex
128
conceptual_darwin_2003_1_0_PreparationType
129
conceptual_darwin_2003_1_0_IndividualCount
130
conceptual_darwin_2003_1_0_PreviousCatalogNumber
131
conceptual_darwin_2003_1_0_RelationshipType
132
conceptual_darwin_2003_1_0_RelatedCatalogItem
133
conceptual_darwin_2003_1_0_Notes
1
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
2
dwc_dwcore_DateLastModified,dcterms:modified,,
3
dwc_dwcore_BasisOfRecord,basisOfRecord,,
4
dwc_dwcore_InstitutionCode,institutionCode,,
5
dwc_dwcore_CollectionCode,collectionCode,,
6
dwc_dwcore_CatalogNumber,catalogNumber,,
7
dwc_dwcore_Remarks,taxonRemarks,,
8
dwc_dwcore_ScientificName,scientificName,,
9
dwc_dwcore_Kingdom,kingdom,,
10
dwc_dwcore_Phylum,phylum,,
11
dwc_dwcore_Class,class,,
12
dwc_dwcore_Order,order,,
13
dwc_dwcore_Family,family,,
14
dwc_dwcore_Genus,genus,,
15
dwc_dwcore_SpecificEpithet,specificEpithet,,
16
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,,
17
dwc_dwcore_AuthorYearOfScientificName,scientificNameAuthorship,/_alt/3,
18
dwc_dwcore_Continent,continent,,
19
dwc_dwcore_Country,country,,
20
dwc_dwcore_StateProvince,stateProvince,,
21
dwc_dwcore_County,county,,
22
dwc_dwcore_Locality,locality,,
23
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,,
24
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,,
25
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,,
26
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,,
27
dwc_dwcore_DayOfYear,day,/_alt/2,
28
dwc_dwcore_Collector,recordedBy,,
29
dwc_dwcore_Sex,sex,,
30
dwc_curatorial_IdentifiedBy,identifiedBy,,
31
dwc_curatorial_CollectorNumber,recordNumber,/_alt/3,
32
dwc_curatorial_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
33
-----
34
SELECT count(*) FROM ""SpeciesLink"".specimens
35
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
36
-----"
37
dwc_curatorial_TypeStatus,typeStatus,,
38
dwc_curatorial_IndividualCount,individualCount,,
39
dwc_geospatial_DecimalLatitude,decimalLatitude,,
40
dwc_geospatial_DecimalLongitude,decimalLongitude,,
41
dwc_geospatial_VerbatimLatitude,verbatimLatitude,,
42
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,
43
http__purl_org_dc_terms_modified,dcterms:modified,,
44
dwc_terms_collectionID,collectionID,,
45
dwc_terms_institutionCode,institutionCode,,
46
dwc_terms_collectionCode,collectionCode,,
47
dwc_terms_basisOfRecord,basisOfRecord,,
48
dwc_terms_identifiedBy,identifiedBy,,
49
dwc_terms_dateIdentified,dateIdentified,,
50
dwc_terms_typeStatus,typeStatus,,
51
dwc_terms_catalogNumber,catalogNumber,,
52
dwc_terms_occurrenceRemarks,occurrenceRemarks,,
53
dwc_terms_recordNumber,recordNumber,/_alt/1,
54
dwc_terms_recordedBy,recordedBy,,
55
dwc_terms_individualCount,individualCount,,
56
dwc_terms_sex,sex,,
57
dwc_terms_preparations,preparations,,
58
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,,
59
dwc_terms_eventTime,eventTime,,
60
dwc_terms_startDayOfYear,startDayOfYear,,
61
dwc_terms_endDayOfYear,endDayOfYear,,
62
dwc_terms_year,year,,
63
dwc_terms_month,month,,
64
dwc_terms_day,day,,
65
dwc_terms_fieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
66
-----
67
SELECT count(*) FROM ""SpeciesLink"".specimens
68
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
69
-----"
70
dwc_terms_continent,continent,,
71
dwc_terms_country,country,,
72
dwc_terms_stateProvince,stateProvince,,
73
dwc_terms_county,county,,
74
dwc_terms_locality,locality,,
75
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,,
76
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,,
77
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,,
78
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,,
79
dwc_terms_verbatimLatitude,verbatimLatitude,,
80
dwc_terms_verbatimLongitude,verbatimLongitude,,
81
dwc_terms_decimalLatitude,decimalLatitude,,
82
dwc_terms_decimalLongitude,decimalLongitude,,
83
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
84
dwc_terms_scientificName,scientificName,,
85
dwc_terms_kingdom,kingdom,,
86
dwc_terms_phylum,phylum,,
87
dwc_terms_class,class,,
88
dwc_terms_order,order,,
89
dwc_terms_family,family,,
90
dwc_terms_genus,genus,,
91
dwc_terms_specificEpithet,specificEpithet,,
92
dwc_terms_infraspecificEpithet,infraspecificEpithet,,
93
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1,
94
conceptual_darwin_2003_1_0_DateLastModified,dcterms:modified,,
95
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,,
96
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,,
97
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,,
98
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
99
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
100
conceptual_darwin_2003_1_0_Kingdom,kingdom,,
101
conceptual_darwin_2003_1_0_Phylum,phylum,,
102
conceptual_darwin_2003_1_0_Class,class,,
103
conceptual_darwin_2003_1_0_Order,order,,
104
conceptual_darwin_2003_1_0_Family,family,,
105
conceptual_darwin_2003_1_0_Genus,genus,,
106
conceptual_darwin_2003_1_0_Species,specificEpithet,,
107
conceptual_darwin_2003_1_0_Subspecies,subspecies,,
108
conceptual_darwin_2003_1_0_ScientificNameAuthor,scientificNameAuthorship,/_alt/2,
109
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,,
110
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,,
111
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,,
112
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,
113
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
114
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3,
115
conceptual_darwin_2003_1_0_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
116
-----
117
SELECT count(*) FROM ""SpeciesLink"".specimens
118
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
119
-----"
120
conceptual_darwin_2003_1_0_Collector,recordedBy,,
121
conceptual_darwin_2003_1_0_YearCollected,yearCollected,,
122
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,,
123
conceptual_darwin_2003_1_0_DayCollected,dayCollected,,
124
conceptual_darwin_2003_1_0_JulianDay,day,/_alt/1,
125
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,,
126
conceptual_darwin_2003_1_0_ContinentOcean,continent,,
127
conceptual_darwin_2003_1_0_Country,country,,
128
conceptual_darwin_2003_1_0_StateProvince,stateProvince,,
129
conceptual_darwin_2003_1_0_County,county,,
130
conceptual_darwin_2003_1_0_Locality,locality,,
131
conceptual_darwin_2003_1_0_Longitude,verbatimLongitude,,
132
conceptual_darwin_2003_1_0_Latitude,verbatimLatitude,,
133
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,,
134
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,,
135
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,,
136
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,,
137
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,,
138
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,,
139
conceptual_darwin_2003_1_0_Sex,sex,,
140
conceptual_darwin_2003_1_0_PreparationType,preparations,,
141
conceptual_darwin_2003_1_0_IndividualCount,individualCount,,
142
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
143
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
144
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
145
conceptual_darwin_2003_1_0_Notes,fieldNotes,,

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