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Revision 4879

inputs/TEAM/VL, VT: Split concatenated flat files apart into separate parts each time a header is duplicated, so that the header would be autoremoved by cat_csv. Changed modified BIEN2 flat file headers back to original headers (the duplicated headers) so the headers of all part files would match up. (This is required for cat_csv header autoremoval to work properly.) This results in changes to the input column names in */map.csv.

View differences:

map.csv
1 1
TEAM,VegCore,Filter,Comments
2
ID,occurrenceID,,
3
SiteName,projectName,,
4
1haPlotCode,plotName,,
5
ObservationDate,eventDate,,
2
Id,occurrenceID,,
3
Site Name,projectName,,
4
1ha Plot Number,plotName,,
5
Observation Date,eventDate,,
6 6
Family,family,,
7 7
Genus,genus,,
8
SpecificEpithet,specificEpithet,,
9
Collectors,recordedBy,,
10
dbh,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 6 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/ci-team_extract/Vegetation-Metadata-1.4.pdf>)"
11
max_diam,max_diam,,
12
max_diam_pom,max_diam_pom,,
13
ConditionCodes,ConditionCodes,,
14
LocationCodes,LocationCodes,,
15
SamplingPeriod,SamplingPeriod,,
8
Species,specificEpithet,,
9
Names of Collectors,recordedBy,,
10
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 6 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/ci-team_extract/Vegetation-Metadata-1.4.pdf>)"
11
Max Diameter,Max Diameter,,
12
Max Diameter POM,Max Diameter POM,,
13
Condition Codes,Condition Codes,,
14
Location Codes,Location Codes,,
15
Sampling Period,Sampling Period,,
16 16
Comments,Comments,,
17
SamplingUnitName,SamplingUnitName,,
17
Sampling Unit Name,Sampling Unit Name,,
18 18
Latitude,verbatimLatitude,,
19 19
Longitude,verbatimLongitude,,
20 20
Method,samplingProtocol,,
21
Subplot,subplot,,
22
X_1haPlot,organismX,,
23
Y_1haPlot,organismY,,
24
TreeNumber,tag,,
25
ProtocolVersion,ProtocolVersion,,
26
ResponsibleInstitution,ResponsibleInstitution,,
27
ProtocolLeadScientist,ProtocolLeadScientist,,
28
ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,,
21
Subplot Number,subplot,,
22
1ha Plot X Coordinate,organismX,,
23
1ha Plot Y Coordinate,organismY,,
24
Tree Number,tag,,
25
Protocol Version,Protocol Version,,
26
Responsible Institution,Responsible Institution,,
27
Protocol Lead Scientist,Protocol Lead Scientist,,
28
Protocol Lead Scientist Institution,Protocol Lead Scientist Institution,,

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