Revision 4879
Added by Aaron Marcuse-Kubitza about 12 years ago
| VegBIEN.csv | ||
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| 1 | 1 |
TEAM,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 |
Subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2", |
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1haPlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
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ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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1haPlotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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Subplot,/location/authorlocationcode, |
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Subplot Number,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
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1ha Plot Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
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Id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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1ha Plot Number,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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Subplot Number,/location/authorlocationcode,
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| 7 | 7 |
Latitude,"/location/locationcoords/latitude_deg/_alt/2/_nullIf:[null=0,type=float]/value", |
| 8 | 8 |
Longitude,"/location/locationcoords/longitude_deg/_alt/2/_nullIf:[null=0,type=float]/value", |
| 9 | 9 |
Method,/location/locationevent/*_id/method/name, |
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SiteName,/location/locationevent/*_id/project/projectname, |
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Subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2", |
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1haPlotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
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ObservationDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value, |
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ObservationDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value, |
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ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
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dbh,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 6 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/ci-team_extract/Vegetation-Metadata-1.4.pdf>)"
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TreeNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
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X_1haPlot,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,
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Y_1haPlot,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,
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1haPlotCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",
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TreeNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/then", |
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ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
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Site Name,/location/locationevent/*_id/project/projectname,
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Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
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1ha Plot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
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Observation Date,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
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Observation Date,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
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Id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
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Diameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 6 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/ci-team_extract/Vegetation-Metadata-1.4.pdf>)"
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Tree Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag,
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1ha Plot X Coordinate,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,
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1ha Plot Y Coordinate,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,
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1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",
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Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/then",
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Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
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| 23 | 23 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 24 | 24 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
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SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
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Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
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Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
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Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname,
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| 27 | 27 |
Comments,,** No join mapping for Comments ** |
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ConditionCodes,,** No join mapping for ConditionCodes ** |
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ProtocolLeadScientist,,** No join mapping for ProtocolLeadScientist ** |
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ProtocolLeadScientistInstitution,,** No join mapping for ProtocolLeadScientistInstitution ** |
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ProtocolVersion,,** No join mapping for ProtocolVersion ** |
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ResponsibleInstitution,,** No join mapping for ResponsibleInstitution ** |
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SamplingPeriod,,** No join mapping for SamplingPeriod ** |
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SamplingUnitName,,** No join mapping for SamplingUnitName ** |
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dbh_new,,** No join mapping for dbh_new ** |
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dbh_new_pom,,** No join mapping for dbh_new_pom ** |
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dbh_pom,,** No join mapping for dbh_pom ** |
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Condition Codes,,** No join mapping for Condition Codes ** |
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New Diameter,,** No join mapping for New Diameter ** |
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New POM Height,,** No join mapping for New POM Height ** |
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POM Height,,** No join mapping for POM Height ** |
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Protocol Lead Scientist,,** No join mapping for Protocol Lead Scientist ** |
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Protocol Lead Scientist Institution,,** No join mapping for Protocol Lead Scientist Institution ** |
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Protocol Version,,** No join mapping for Protocol Version ** |
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Responsible Institution,,** No join mapping for Responsible Institution ** |
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Sampling Period,,** No join mapping for Sampling Period ** |
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Sampling Unit Name,,** No join mapping for Sampling Unit Name ** |
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Also available in: Unified diff
inputs/TEAM/VL, VT: Split concatenated flat files apart into separate parts each time a header is duplicated, so that the header would be autoremoved by cat_csv. Changed modified BIEN2 flat file headers back to original headers (the duplicated headers) so the headers of all part files would match up. (This is required for cat_csv header autoremoval to work properly.) This results in changes to the input column names in */map.csv.