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Revision 4908

mappings/VegCore.csv: Soil component measurements: Added default units of percent (cmol_kg for cationExchangeCapacity). This involves translating the names everywhere and adding a _percent_to_fraction conversion in mappings/VegCore-VegBIEN.csv.

View differences:

VegBIEN.csv
19 19
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
20 20
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
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precip_mm,/location/locationevent/precipitation_m,
22
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
23
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_units:[default=""%"",to=]/value",
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soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_units:[default=""%"",to=]/value",
25
soil_C,"/location/locationevent/soilobs/carbon_fraction/_units:[default=""%"",to=]/value",
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soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
23
soil_base,"/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
24
soil_Ca,"/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
25
soil_C,"/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
26 26
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
27
clay_percent,"/location/locationevent/soilobs/clay_fraction/_units:[default=""%"",to=]/value",
27
clay_percent,"/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
28 28
soil_conductivity,/location/locationevent/soilobs/conductivity,
29
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_units:[default=""%"",to=]/value",
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soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_units:[default=""%"",to=]/value",
31
organic_percent,"/location/locationevent/soilobs/organic_fraction/_units:[default=""%"",to=]/value",
29
soil_Mg,"/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
30
soil_N,"/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
31
organic_percent,"/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
32 32
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
33
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
34
soil_K,"/location/locationevent/soilobs/potassium_fraction/_units:[default=""%"",to=]/value",
35
sand_percent,"/location/locationevent/soilobs/sand_fraction/_units:[default=""%"",to=]/value",
36
silt_percent,"/location/locationevent/soilobs/silt_fraction/_units:[default=""%"",to=]/value",
37
soil_Na,"/location/locationevent/soilobs/sodium_fraction/_units:[default=""%"",to=]/value",
33
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
34
soil_K,"/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
35
sand_percent,"/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
36
silt_percent,"/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
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soil_Na,"/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value/_units:[default=""%"",to=]/value",
38 38
soil_texture,/location/locationevent/soilobs/texture,
39 39
PLOT_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
40 40
plot_code,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)

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