Revision 4979
Added by Aaron Marcuse-Kubitza almost 12 years ago
| VegBIEN.csv | ||
|---|---|---|
| 78 | 78 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| 79 | 79 |
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/1",Brad: Map instead as for voucher_string |
| 80 | 80 |
voucher_string,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 81 |
collector_code,,** No join mapping for collector_code ** Brad: OMIT |
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| 82 |
comments,,** No join mapping for comments ** Brad: OMIT |
|
| 83 |
fam_status,,** No join mapping for fam_status ** Brad: OMIT. This will be determined later by using TNRS. |
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| 84 |
gen_status,,** No join mapping for gen_status ** Brad: OMIT. This will be determined later by using TNRS. |
|
| 85 |
ind_id,,** No join mapping for ind_id ** Brad: OMIT |
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| 86 |
species_status,,"** No join mapping for species_status ** Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS." |
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| 81 |
collector_code,,** No join mapping for *collector_code ** Brad: OMIT |
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| 82 |
comments,,** No join mapping for *comments ** Brad: OMIT |
|
| 83 |
fam_status,,** No join mapping for *fam_status ** Brad: OMIT. This will be determined later by using TNRS. |
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| 84 |
gen_status,,** No join mapping for *gen_status ** Brad: OMIT. This will be determined later by using TNRS. |
|
| 85 |
ind_id,,** No join mapping for *ind_id ** Brad: OMIT |
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| 86 |
species_status,,"** No join mapping for *species_status ** Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS." |
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Also available in: Unified diff
inputs/*/*/map.csv: Prefix a * to every term that's not in Veg+ for easy identification of unmapped terms when editing map.csv. Note that canon will remove the * when it finds a matching Veg+ term.