Project

General

Profile

1 3077 aaronmk
# Database import/export
2
3 3534 aaronmk
import copy
4 4995 aaronmk
import csv
5 3431 aaronmk
import operator
6 3714 aaronmk
import warnings
7 3431 aaronmk
8 4995 aaronmk
import csvs
9 3077 aaronmk
import exc
10
import dicts
11
import sql
12
import sql_gen
13
import strings
14
import util
15
16 3645 aaronmk
##### Exceptions
17
18
# Can't use built-in SyntaxError because it stringifies to only the first line
19
class SyntaxError(Exception): pass
20
21 3081 aaronmk
##### Data cleanup
22
23 4915 aaronmk
null_strs = ['', '-', r'\N', 'NULL', 'UNKNOWN', 'nulo']
24 4209 aaronmk
25 4447 aaronmk
def cleanup_table(db, table):
26 3081 aaronmk
    table = sql_gen.as_Table(table)
27 4914 aaronmk
    cols = [sql_gen.as_Col(strings.ustr(c), table)
28
        for c in sql.table_cols(db, table)]
29 4407 aaronmk
    cols = filter(lambda c: sql_gen.is_text_col(db, c), cols)
30 4928 aaronmk
    if not cols: return
31 3081 aaronmk
32 4993 aaronmk
    db.log_debug('Cleaning up table', level=1.5)
33
34 4209 aaronmk
    expr = 'trim(both from %s)'
35
    for null in null_strs: expr = 'nullif('+expr+', '+db.esc_value(null)+')'
36
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db))) for v in cols]
37 3081 aaronmk
38 4444 aaronmk
    while True:
39
        try:
40
            sql.update(db, table, changes, in_place=True, recover=True)
41
            break # successful
42
        except sql.NullValueException, e:
43 4457 aaronmk
            db.log_debug('Caught exception: '+exc.str_(e))
44 4444 aaronmk
            col, = e.cols
45
            sql.drop_not_null(db, col)
46 4992 aaronmk
47
    db.log_debug('Vacuuming and reanalyzing table', level=1.5)
48
    sql.vacuum(db, table)
49 3081 aaronmk
50 3078 aaronmk
##### Error tracking
51
52
def track_data_error(db, errors_table, cols, value, error_code, error):
53
    '''
54
    @param errors_table If None, does nothing.
55
    '''
56
    if errors_table == None or cols == (): return
57
58
    for col in cols:
59
        try:
60
            sql.insert(db, errors_table, dict(column=col.name, value=value,
61
                error_code=error_code, error=error), recover=True,
62
                cacheable=True, log_level=4)
63
        except sql.DuplicateKeyException: pass
64
65 3506 aaronmk
class ExcToErrorsTable(sql_gen.ExcToWarning):
66
    '''Handles an exception by saving it or converting it to a warning.'''
67 3511 aaronmk
    def __init__(self, return_, srcs, errors_table, value=None):
68 3506 aaronmk
        '''
69
        @param return_ See sql_gen.ExcToWarning
70
        @param srcs The column names for the errors table
71
        @param errors_table None|sql_gen.Table
72 3511 aaronmk
        @param value The value (or an expression for it) that caused the error
73 3506 aaronmk
        @pre The invalid value must be in a local variable "value" of type text.
74
        '''
75
        sql_gen.ExcToWarning.__init__(self, return_)
76
77 3511 aaronmk
        value = sql_gen.as_Code(value)
78
79 3506 aaronmk
        self.srcs = srcs
80
        self.errors_table = errors_table
81 3511 aaronmk
        self.value = value
82 3501 aaronmk
83 3506 aaronmk
    def to_str(self, db):
84
        if not self.srcs or self.errors_table == None:
85
            return sql_gen.ExcToWarning.to_str(self, db)
86
87 3459 aaronmk
        errors_table_cols = map(sql_gen.Col,
88
            ['column', 'value', 'error_code', 'error'])
89 3465 aaronmk
        col_names_query = sql.mk_select(db, sql_gen.NamedValues('c', None,
90 3506 aaronmk
            [[c.name] for c in self.srcs]), order_by=None)
91
        insert_query = sql.mk_insert_select(db, self.errors_table,
92
            errors_table_cols,
93 3465 aaronmk
            sql_gen.Values(errors_table_cols).to_str(db))+';\n'
94 3506 aaronmk
        return '''\
95 3459 aaronmk
-- Save error in errors table.
96
DECLARE
97
    error_code text := SQLSTATE;
98
    error text := SQLERRM;
99 3511 aaronmk
    value text := '''+self.value.to_str(db)+''';
100 3529 aaronmk
    "column" text;
101 3459 aaronmk
BEGIN
102
    -- Insert the value and error for *each* source column.
103 3529 aaronmk
'''+strings.indent(sql_gen.RowExcIgnore(None, col_names_query, insert_query,
104 3467 aaronmk
    row_var=errors_table_cols[0]).to_str(db))+'''
105 3459 aaronmk
END;
106 3501 aaronmk
107 3506 aaronmk
'''+self.return_.to_str(db)
108 3459 aaronmk
109 3507 aaronmk
def data_exception_handler(*args, **kw_args):
110 3506 aaronmk
    '''Handles a data_exception by saving it or converting it to a warning.
111
    For params, see ExcToErrorsTable().
112
    '''
113
    return sql_gen.data_exception_handler(ExcToErrorsTable(*args, **kw_args))
114
115 3078 aaronmk
def cast(db, type_, col, errors_table=None):
116
    '''Casts an (unrenamed) column or value.
117
    If errors_table set and col has srcs, saves errors in errors_table (using
118 3360 aaronmk
    col's srcs attr as source columns). Otherwise, converts errors to warnings.
119 3078 aaronmk
    @param col str|sql_gen.Col|sql_gen.Literal
120
    @param errors_table None|sql_gen.Table|str
121
    '''
122
    col = sql_gen.as_Col(col)
123
124 3112 aaronmk
    # Don't convert exceptions to warnings for user-supplied constants
125
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
126
127 3078 aaronmk
    assert not isinstance(col, sql_gen.NamedCol)
128
129 3460 aaronmk
    function_name = strings.first_word(type_)
130 3459 aaronmk
    srcs = col.srcs
131 3508 aaronmk
    save_errors = errors_table != None and srcs
132
    if save_errors: # function will be unique for the given srcs
133 3750 aaronmk
        function_name = strings.ustr(sql_gen.FunctionCall(function_name,
134 3508 aaronmk
            *map(sql_gen.to_name_only_col, srcs)))
135 3078 aaronmk
    function = db.TempFunction(function_name)
136
137 3464 aaronmk
    # Create function definition
138
    modifiers = 'STRICT'
139
    if not save_errors: modifiers = 'IMMUTABLE '+modifiers
140 3511 aaronmk
    value_param = sql_gen.FunctionParam('value', 'text')
141
    handler = data_exception_handler('RETURN NULL;\n', srcs, errors_table,
142
        value_param.name)
143 3464 aaronmk
    body = sql_gen.CustomCode(handler.to_str(db, '''\
144 3467 aaronmk
/* The explicit cast to the return type is needed to make the cast happen
145
inside the try block. (Implicit casts to the return type happen at the end
146
of the function, outside any block.) */
147
RETURN value::'''+type_+''';
148 3464 aaronmk
'''))
149
    body.lang='plpgsql'
150 3500 aaronmk
    sql.define_func(db, sql_gen.FunctionDef(function, type_, body,
151 3511 aaronmk
        [value_param], modifiers))
152 3464 aaronmk
153 3078 aaronmk
    return sql_gen.FunctionCall(function, col)
154
155 3538 aaronmk
def func_wrapper_exception_handler(db, return_, args, errors_table):
156 3524 aaronmk
    '''Handles a function call's data_exceptions.
157
    Supports PL/Python functions.
158
    @param return_ See data_exception_handler()
159
    @param args [arg...] Function call's args
160
    @param errors_table See data_exception_handler()
161
    '''
162
    args = filter(sql_gen.has_srcs, args)
163
164
    srcs = sql_gen.cross_join_srcs(args)
165 3538 aaronmk
    value = sql_gen.merge_not_null(db, ',', args)
166 3524 aaronmk
    return sql_gen.NestedExcHandler(
167
        data_exception_handler(return_, srcs, errors_table, value)
168
        , sql_gen.plpythonu_error_handler
169
        )
170
171 3078 aaronmk
def cast_temp_col(db, type_, col, errors_table=None):
172
    '''Like cast(), but creates a new column with the cast values if the input
173
    is a column.
174
    @return The new column or cast value
175
    '''
176
    def cast_(col): return cast(db, type_, col, errors_table)
177
178
    try: col = sql_gen.underlying_col(col)
179
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
180
181
    table = col.table
182 3173 aaronmk
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
183 3078 aaronmk
    expr = cast_(col)
184
185
    # Add column
186
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
187 3750 aaronmk
    sql.add_col(db, table, new_typed_col, comment=strings.urepr(col)+'::'+type_)
188 3078 aaronmk
    new_col.name = new_typed_col.name # propagate any renaming
189
190 3110 aaronmk
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
191 3078 aaronmk
192
    return new_col
193
194
def errors_table(db, table, if_exists=True):
195
    '''
196
    @param if_exists If set, returns None if the errors table doesn't exist
197
    @return None|sql_gen.Table
198
    '''
199
    table = sql_gen.as_Table(table)
200
    if table.srcs != (): table = table.srcs[0]
201
202
    errors_table = sql_gen.suffixed_table(table, '.errors')
203
    if if_exists and not sql.table_exists(db, errors_table): return None
204
    return errors_table
205
206 4436 aaronmk
def mk_errors_table(db, table):
207
    errors_table_ = errors_table(db, table, if_exists=False)
208 4557 aaronmk
    if sql.table_exists(db, errors_table_, cacheable=False): return
209 4436 aaronmk
210
    typed_cols = [
211
        sql_gen.TypedCol('column', 'text', nullable=False),
212
        sql_gen.TypedCol('value', 'text'),
213
        sql_gen.TypedCol('error_code', 'character varying(5)', nullable=False),
214
        sql_gen.TypedCol('error', 'text', nullable=False),
215
        ]
216
    sql.create_table(db, errors_table_, typed_cols, has_pkey=False)
217
    index_cols = ['column', 'value', 'error_code', 'error']
218
    sql.add_index(db, index_cols, errors_table_, unique=True)
219
220 3078 aaronmk
##### Import
221
222 5017 aaronmk
def append_csv(db, table, stream_info, stream, use_copy_from=True):
223
    def log(msg, level=1): db.log_debug(msg, level)
224
225
    dialect = stream_info.dialect
226
    if csvs.is_tsv(dialect): use_copy_from = False
227
    if use_copy_from:
228
        log('Using COPY FROM')
229
230
        # Create COPY FROM statement
231
        copy_from = ('COPY '+table.to_str(db)+' FROM STDIN DELIMITER '
232
            +db.esc_value(dialect.delimiter)+' NULL '+db.esc_value(''))
233
        assert not csvs.is_tsv(dialect)
234
        copy_from += ' CSV'
235
        if dialect.quoting != csv.QUOTE_NONE:
236
            quote_str = db.esc_value(dialect.quotechar)
237
            copy_from += ' QUOTE '+quote_str
238
            if dialect.doublequote: copy_from += ' ESCAPE '+quote_str
239
        copy_from += ';\n'
240
241
        log(copy_from, level=2)
242
        db.db.cursor().copy_expert(copy_from, stream)
243
    else:
244
        log('Using INSERT')
245
        cols_ct = len(stream_info.header)
246
        for row in csvs.make_reader(stream, dialect):
247
            row = map(strings.to_unicode, row)
248
            util.list_set_length(row, cols_ct) # truncate extra cols
249
            sql.insert(db, table, row, cacheable=False, log_level=5)
250
251 4995 aaronmk
def import_csv(db, table, stream, use_copy_from=True, has_row_num=True):
252
    def log(msg, level=1): db.log_debug(msg, level)
253
254
    # Get format info
255
    info = csvs.stream_info(stream, parse_header=True)
256
    col_names = map(strings.to_unicode, info.header)
257
    for i, col in enumerate(col_names): # replace empty column names
258
        if col == '': col_names[i] = 'column_'+str(i)
259
260
    # Select schema and escape names
261
    def esc_name(name): return db.esc_name(name)
262
263
    typed_cols = [sql_gen.TypedCol(v, 'text') for v in col_names]
264
265
    log('Creating table')
266 4999 aaronmk
    # Note that this is not rolled back if the import fails. Instead, it is
267
    # cached, and will not be re-run if the import is retried.
268 4995 aaronmk
    sql.create_table(db, table, typed_cols, has_pkey=False, col_indexes=False)
269
270 5001 aaronmk
    # Free memory used by deleted (rolled back) rows from any failed import.
271
    # This MUST be run so that the rows will be stored in inserted order, and
272
    # the row_num added after import will match up with the CSV's row order.
273 4999 aaronmk
    sql.truncate(db, table)
274
275 4995 aaronmk
    # Load the data
276 5017 aaronmk
    sql.with_savepoint(db, lambda: append_csv(db, table, info, stream,
277
        use_copy_from))
278 4995 aaronmk
279 4998 aaronmk
    if has_row_num: sql.add_row_num(db, table, sql.pkey_col)
280 4995 aaronmk
    cleanup_table(db, table)
281
282 3077 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
283
    '''Recovers from errors.
284
    Only works under PostgreSQL (uses INSERT RETURNING).
285
    '''
286 3633 aaronmk
    return put_table(db, table, [], row, row_ct_ref)
287 3077 aaronmk
288
def get(db, table, row, pkey, row_ct_ref=None, create=False):
289
    '''Recovers from errors'''
290
    try:
291
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
292
            recover=True))
293
    except StopIteration:
294
        if not create: raise
295
        return put(db, table, row, pkey, row_ct_ref) # insert new row
296
297
def is_func_result(col):
298
    return col.table.name.find('(') >= 0 and col.name == 'result'
299
300
def into_table_name(out_table, in_tables0, mapping, is_func):
301
    def in_col_str(in_col):
302
        in_col = sql_gen.remove_col_rename(in_col)
303
        if isinstance(in_col, sql_gen.Col):
304
            table = in_col.table
305
            if table == in_tables0:
306
                in_col = sql_gen.to_name_only_col(in_col)
307
            elif is_func_result(in_col): in_col = table # omit col name
308 3750 aaronmk
        return strings.ustr(in_col)
309 3077 aaronmk
310 4491 aaronmk
    str_ = strings.ustr(out_table)
311 3077 aaronmk
    if is_func:
312
        str_ += '('
313
314
        try: value_in_col = mapping['value']
315
        except KeyError:
316 4491 aaronmk
            str_ += ', '.join((strings.ustr(k)+'='+in_col_str(v)
317 3077 aaronmk
                for k, v in mapping.iteritems()))
318
        else: str_ += in_col_str(value_in_col)
319
320
        str_ += ')'
321
    else:
322
        out_col = 'rank'
323
        try: in_col = mapping[out_col]
324
        except KeyError: str_ += '_pkeys'
325
        else: # has a rank column, so hierarchical
326 4491 aaronmk
            str_ += '['+strings.ustr(out_col)+'='+in_col_str(in_col)+']'
327 3077 aaronmk
    return str_
328
329 3628 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, default=None,
330 3660 aaronmk
    col_defaults={}, on_error=exc.reraise):
331 3077 aaronmk
    '''Recovers from errors.
332
    Only works under PostgreSQL (uses INSERT RETURNING).
333
    IMPORTANT: Must be run at the *beginning* of a transaction.
334
    @param in_tables The main input table to select from, followed by a list of
335
        tables to join with it using the main input table's pkey
336
    @param mapping dict(out_table_col=in_table_col, ...)
337
        * out_table_col: str (*not* sql_gen.Col)
338
        * in_table_col: sql_gen.Col|literal-value
339
    @param default The *output* column to use as the pkey for missing rows.
340
        If this output column does not exist in the mapping, uses None.
341 3618 aaronmk
    @param col_defaults Default values for required columns.
342 3077 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
343
    '''
344 3474 aaronmk
    import psycopg2.extensions
345
346 3077 aaronmk
    out_table = sql_gen.as_Table(out_table)
347
348
    def log_debug(msg): db.log_debug(msg, level=1.5)
349
    def col_ustr(str_):
350
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
351
352
    log_debug('********** New iteration **********')
353
    log_debug('Inserting these input columns into '+strings.as_tt(
354
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
355
356
    is_function = sql.function_exists(db, out_table)
357
358 4984 aaronmk
    # Warn if inserting empty table rows
359
    if not mapping and not is_function: # functions with no args OK
360
        warnings.warn(UserWarning('Inserting empty table row(s)'))
361
362 3077 aaronmk
    if is_function: out_pkey = 'result'
363
    else: out_pkey = sql.pkey(db, out_table, recover=True)
364
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
365
366
    in_tables_ = in_tables[:] # don't modify input!
367 3432 aaronmk
    try: in_tables0 = in_tables_.pop(0) # first table is separate
368
    except IndexError: in_tables0 = None
369
    else:
370
        in_pkey = sql.pkey(db, in_tables0, recover=True)
371
        in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
372 3431 aaronmk
373
    # Determine if can use optimization for only literal values
374
    is_literals = not reduce(operator.or_, map(sql_gen.is_table_col,
375 3434 aaronmk
        mapping.values()), False)
376 3431 aaronmk
    is_literals_or_function = is_literals or is_function
377
378 3432 aaronmk
    if in_tables0 == None: errors_table_ = None
379
    else: errors_table_ = errors_table(db, in_tables0)
380 3431 aaronmk
381
    # Create input joins from list of input tables
382 3077 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v,
383
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
384
385 3433 aaronmk
    if mapping == {} and not is_function: # need >= one column for INSERT SELECT
386
        mapping = {out_pkey: None} # ColDict will replace with default value
387
388 3431 aaronmk
    if not is_literals:
389 3628 aaronmk
        into = sql_gen.as_Table(into_table_name(out_table, in_tables0, mapping,
390
            is_function))
391 4484 aaronmk
        # Ensure into's out_pkey is different from in_pkey by prepending table
392 4495 aaronmk
        if is_function: into_out_pkey = out_pkey
393
        else: into_out_pkey = strings.ustr(out_pkey_col)
394 3431 aaronmk
395
        # Set column sources
396
        in_cols = filter(sql_gen.is_table_col, mapping.values())
397
        for col in in_cols:
398
            if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
399
400
        log_debug('Joining together input tables into temp table')
401
        # Place in new table so don't modify input and for speed
402
        in_table = sql_gen.Table('in')
403
        mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
404
            in_cols, preserve=[in_pkey_col]))
405
        input_joins = [in_table]
406
        db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
407 3077 aaronmk
408 3692 aaronmk
    # Wrap mapping in a sql_gen.ColDict.
409
    # sql_gen.ColDict sanitizes both keys and values passed into it.
410
    # Do after applying dicts.join() because that returns a plain dict.
411 3077 aaronmk
    mapping = sql_gen.ColDict(db, out_table, mapping)
412
413
    # Resolve default value column
414
    if default != None:
415
        try: default = mapping[default]
416
        except KeyError:
417
            db.log_debug('Default value column '
418
                +strings.as_tt(strings.repr_no_u(default))
419
                +' does not exist in mapping, falling back to None', level=2.1)
420
            default = None
421
422 3287 aaronmk
    # Save default values for all rows since in_table may have rows deleted
423 3431 aaronmk
    if is_literals: pass
424
    elif is_function: full_in_table = in_table
425 3386 aaronmk
    else:
426
        full_in_table = sql_gen.suffixed_table(in_table, '_full')
427
        full_in_table_cols = [in_pkey_col]
428
        if default != None:
429
            full_in_table_cols.append(default)
430
            default = sql_gen.with_table(default, full_in_table)
431
        sql.run_query_into(db, sql.mk_select(db, in_table, full_in_table_cols,
432
            order_by=None), into=full_in_table, add_pkey_=True)
433 3287 aaronmk
434 3077 aaronmk
    pkeys_table_exists_ref = [False]
435 3499 aaronmk
    def insert_into_pkeys(joins, cols=None, limit=None, **kw_args):
436 3477 aaronmk
        query = sql.mk_select(db, joins, cols, order_by=None, limit=limit)
437 3077 aaronmk
        if pkeys_table_exists_ref[0]:
438 4484 aaronmk
            sql.insert_select(db, into, [in_pkey, into_out_pkey], query,
439
                **kw_args)
440 3077 aaronmk
        else:
441 3304 aaronmk
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
442 3077 aaronmk
            pkeys_table_exists_ref[0] = True
443
444
    limit_ref = [None]
445 3418 aaronmk
    def mk_main_select(joins, cols):
446
        return sql.mk_select(db, joins, cols, limit=limit_ref[0], order_by=None)
447
448 3431 aaronmk
    if is_literals: insert_in_table = None
449
    else:
450
        insert_in_table = in_table
451
        insert_in_tables = [insert_in_table]
452 3352 aaronmk
    join_cols = sql_gen.ColDict(db, out_table)
453 3077 aaronmk
454
    exc_strs = set()
455
    def log_exc(e):
456
        e_str = exc.str_(e, first_line_only=True)
457
        log_debug('Caught exception: '+e_str)
458 3552 aaronmk
        if e_str in exc_strs: # avoid infinite loops
459
            log_debug('Exception already seen, handler broken')
460
            on_error(e)
461
            remove_all_rows()
462
        else: exc_strs.add(e_str)
463 3077 aaronmk
464
    def remove_all_rows():
465
        log_debug('Ignoring all rows')
466
        limit_ref[0] = 0 # just create an empty pkeys table
467
468 3352 aaronmk
    def ignore_cond(cond, e):
469 3704 aaronmk
        if is_literals: remove_all_rows()
470
        else:
471
            out_table_cols = sql_gen.ColDict(db, out_table)
472
            out_table_cols.update(util.dict_subset_right_join({},
473
                sql.table_cols(db, out_table)))
474
475
            in_cols = []
476
            cond = sql.map_expr(db, cond, mapping, in_cols)
477
            cond = sql.map_expr(db, cond, out_table_cols)
478
479
            track_data_error(db, errors_table_, sql_gen.cols_srcs(in_cols),
480
                None, e.cause.pgcode,
481
                strings.ensure_newl(e.cause.pgerror)+'condition: '+cond)
482
483
            not_cond = sql_gen.NotCond(sql_gen.CustomCode(cond))
484
            log_debug('Ignoring rows where '+strings.as_tt(not_cond.to_str(db)))
485
            sql.delete(db, insert_in_table, not_cond)
486 3352 aaronmk
487 3294 aaronmk
    not_null_cols = set()
488 3077 aaronmk
    def ignore(in_col, value, e):
489 3630 aaronmk
        if sql_gen.is_table_col(in_col):
490
            in_col = sql_gen.with_table(in_col, insert_in_table)
491
492
            track_data_error(db, errors_table_, in_col.srcs, value,
493
                e.cause.pgcode, e.cause.pgerror)
494
495
            sql.add_index(db, in_col, insert_in_table) # enable fast filtering
496
            if value != None and in_col not in not_null_cols:
497 4492 aaronmk
                log_debug('Replacing invalid value '
498
                    +strings.as_tt(strings.urepr(value))+' with NULL in column '
499
                    +strings.as_tt(in_col.to_str(db)))
500 3630 aaronmk
                sql.update(db, insert_in_table, [(in_col, None)],
501
                    sql_gen.ColValueCond(in_col, value))
502
            else:
503 3637 aaronmk
                log_debug('Ignoring rows with '+strings.as_tt(in_col.to_str(db))
504 4492 aaronmk
                    +' = '+strings.as_tt(strings.urepr(value)))
505 3630 aaronmk
                sql.delete(db, insert_in_table,
506
                    sql_gen.ColValueCond(in_col, value))
507
                if value == None: not_null_cols.add(in_col)
508 3293 aaronmk
        else:
509 3630 aaronmk
            assert isinstance(in_col, sql_gen.NamedCol)
510 3684 aaronmk
            in_value = sql_gen.remove_col_rename(in_col)
511
            assert sql_gen.is_literal(in_value)
512
            if value == in_value.value:
513
                if value != None:
514
                    log_debug('Replacing invalid literal '
515
                        +strings.as_tt(in_col.to_str(db))+' with NULL')
516
                    mapping[in_col.name] = None
517
                else:
518
                    remove_all_rows()
519
            # otherwise, all columns were being ignore()d because the specific
520
            # column couldn't be identified, and this was not the invalid column
521 3077 aaronmk
522 3431 aaronmk
    if not is_literals:
523
        def insert_pkeys_table(which):
524
            return sql_gen.Table(sql_gen.concat(in_table.name,
525
                '_insert_'+which+'_pkeys'))
526
        insert_out_pkeys = insert_pkeys_table('out')
527
        insert_in_pkeys = insert_pkeys_table('in')
528 3077 aaronmk
529 3918 aaronmk
    def mk_func_call():
530 3550 aaronmk
        args = dict(((k.name, v) for k, v in mapping.iteritems()))
531 4484 aaronmk
        return sql_gen.FunctionCall(out_table, **args), args
532 3550 aaronmk
533 3918 aaronmk
    if is_function and not is_literals:
534
        log_debug('Defining wrapper function')
535
536
        func_call, args = mk_func_call()
537 4484 aaronmk
        func_call = sql_gen.NamedCol(into_out_pkey, func_call)
538 3918 aaronmk
539
        # Create empty pkeys table so its row type can be used
540
        insert_into_pkeys(input_joins, [in_pkey_col, func_call], limit=0,
541
            recover=True)
542 4484 aaronmk
        result_type = db.col_info(sql_gen.Col(into_out_pkey, into)).type
543 3918 aaronmk
544
        ## Create error handling wrapper function
545
546
        wrapper = db.TempFunction(sql_gen.concat(into.name, '_wrap'))
547
548
        select_cols = [in_pkey_col]+args.values()
549
        row_var = copy.copy(sql_gen.row_var)
550
        row_var.set_srcs([in_table])
551
        in_pkey_var = sql_gen.Col(in_pkey, row_var)
552
553
        args = dict(((k, sql_gen.with_table(v, row_var))
554
            for k, v in args.iteritems()))
555
        func_call = sql_gen.FunctionCall(out_table, **args)
556
557
        def mk_return(result):
558
            return sql_gen.ReturnQuery(sql.mk_select(db,
559
                fields=[in_pkey_var, result], explain=False))
560
        exc_handler = func_wrapper_exception_handler(db,
561
            mk_return(sql_gen.Cast(result_type, None)), args.values(),
562
            errors_table_)
563
564
        sql.define_func(db, sql_gen.FunctionDef(wrapper, sql_gen.SetOf(into),
565
            sql_gen.RowExcIgnore(sql_gen.RowType(in_table),
566
                sql.mk_select(db, input_joins, order_by=None),
567
                mk_return(func_call), exc_handler=exc_handler)
568
            ))
569
        wrapper_table = sql_gen.FunctionCall(wrapper)
570 3550 aaronmk
571 3077 aaronmk
    # Do inserts and selects
572
    while True:
573 3473 aaronmk
        has_joins = join_cols != {}
574
575 3551 aaronmk
        # Handle unrecoverable errors in a special case
576
        if limit_ref[0] == 0:
577 4207 aaronmk
            if is_literals or default == None:
578 3686 aaronmk
                default = sql_gen.remove_col_rename(default)
579 4492 aaronmk
                log_debug('Returning default: '
580
                    +strings.as_tt(strings.urepr(default)))
581 3623 aaronmk
                return default
582 3551 aaronmk
            elif is_function: pass # empty pkeys table already created
583
            else:
584
                log_debug('Creating an empty output pkeys table')
585 3745 aaronmk
                has_joins = False # use the no-joins case
586 3551 aaronmk
                cur = sql.run_query_into(db, sql.mk_select(db, out_table,
587
                    [out_pkey], order_by=None, limit=0), into=insert_out_pkeys)
588
589 3077 aaronmk
            break # don't do main case
590
591
        # Prepare to insert new rows
592 3918 aaronmk
        if is_function:
593
            log_debug('Calling function on input rows')
594
            if is_literals: func_call, args = mk_func_call()
595 3077 aaronmk
        else:
596 3550 aaronmk
            log_debug('Trying to insert new rows')
597 3291 aaronmk
            insert_args = dict(recover=True, cacheable=False)
598
            if has_joins:
599
                insert_args.update(dict(ignore=True))
600
            else:
601 3431 aaronmk
                insert_args.update(dict(returning=out_pkey))
602
                if not is_literals:
603
                    insert_args.update(dict(into=insert_out_pkeys))
604 3291 aaronmk
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
605
                c, insert_in_table) for c in mapping.values()])
606 3077 aaronmk
607 3292 aaronmk
        try:
608
            cur = None
609 3077 aaronmk
            if is_function:
610 3917 aaronmk
                if is_literals:
611
                    cur = sql.select(db, fields=[func_call], recover=True,
612
                        cacheable=True)
613 3499 aaronmk
                else: insert_into_pkeys(wrapper_table, recover=True)
614 3077 aaronmk
            else:
615 3292 aaronmk
                cur = sql.insert_select(db, out_table, mapping.keys(),
616 3077 aaronmk
                    main_select, **insert_args)
617
            break # insert successful
618
        except sql.MissingCastException, e:
619
            log_exc(e)
620
621
            type_ = e.type
622 4140 aaronmk
            if e.col == None: out_cols = mapping.keys()
623
            else: out_cols = [e.col]
624 3077 aaronmk
625 4140 aaronmk
            for out_col in out_cols:
626 4171 aaronmk
                log_debug('Casting '+strings.as_tt(strings.repr_no_u(out_col))
627 4140 aaronmk
                    +' input to '+strings.as_tt(type_))
628
                in_col = mapping[out_col]
629
                while True:
630
                    try:
631
                        mapping[out_col] = cast_temp_col(db, type_, in_col,
632
                            errors_table_)
633
                        break # cast successful
634
                    except sql.InvalidValueException, e:
635
                        log_exc(e)
636
637
                        ignore(in_col, e.value, e)
638 3077 aaronmk
        except sql.DuplicateKeyException, e:
639
            log_exc(e)
640
641 3274 aaronmk
            # Different rows violating different unique constraints not
642
            # supported
643
            assert not join_cols
644
645 3077 aaronmk
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
646
            log_debug('Ignoring existing rows, comparing on these columns:\n'
647
                +strings.as_inline_table(join_cols, ustr=col_ustr))
648 3102 aaronmk
649 3431 aaronmk
            if is_literals:
650
                return sql.value(sql.select(db, out_table, [out_pkey_col],
651 4025 aaronmk
                    join_cols, order_by=None))
652 3431 aaronmk
653 3102 aaronmk
            # Uniquify input table to avoid internal duplicate keys
654
            insert_in_table = sql.distinct_table(db, insert_in_table,
655 3358 aaronmk
                join_cols.values())
656 3144 aaronmk
            insert_in_tables.append(insert_in_table)
657 3077 aaronmk
        except sql.NullValueException, e:
658
            log_exc(e)
659
660
            out_col, = e.cols
661
            try: in_col = mapping[out_col]
662 3618 aaronmk
            except KeyError, e:
663
                try: in_col = mapping[out_col] = col_defaults[out_col]
664
                except KeyError:
665
                    msg = 'Missing mapping for NOT NULL column '+out_col
666
                    log_debug(msg)
667 3713 aaronmk
                    if default == None: warnings.warn(UserWarning(msg))
668
                        # not an error because sometimes the mappings include
669
                        # extra tables which aren't used by the dataset
670 3618 aaronmk
                    remove_all_rows()
671 3294 aaronmk
            else: ignore(in_col, None, e)
672 3352 aaronmk
        except sql.CheckException, e:
673
            log_exc(e)
674
675
            ignore_cond(e.cond, e)
676 3413 aaronmk
        except sql.InvalidValueException, e:
677
            log_exc(e)
678
679
            for in_col in mapping.values(): ignore(in_col, e.value, e)
680 3474 aaronmk
        except psycopg2.extensions.TransactionRollbackError, e:
681
            log_exc(e)
682
            # retry
683 3077 aaronmk
        except sql.DatabaseErrors, e:
684
            log_exc(e)
685
686
            log_debug('No handler for exception')
687
            on_error(e)
688
            remove_all_rows()
689
        # after exception handled, rerun loop with additional constraints
690
691
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
692
        row_ct_ref[0] += cur.rowcount
693
694 3530 aaronmk
    if is_literals: return sql.value(cur)
695
696
    if is_function: pass # pkeys table already created
697 3077 aaronmk
    elif has_joins:
698
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
699
        log_debug('Getting output table pkeys of existing/inserted rows')
700 4484 aaronmk
        insert_into_pkeys(select_joins, [in_pkey_col,
701
            sql_gen.NamedCol(into_out_pkey, out_pkey_col)])
702 3077 aaronmk
    else:
703
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
704
705
        log_debug('Getting input table pkeys of inserted rows')
706 3285 aaronmk
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
707
        # since the SELECT query is identical to the one used in INSERT SELECT,
708
        # its rows will be retrieved in the same order.
709 3077 aaronmk
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
710
            into=insert_in_pkeys)
711
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
712
713
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
714
            db, insert_in_pkeys)
715
716
        log_debug('Combining output and input pkeys in inserted order')
717
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
718
            {sql.row_num_col: sql_gen.join_same_not_null})]
719 4484 aaronmk
        in_col = sql_gen.Col(in_pkey, insert_in_pkeys)
720
        out_col = sql_gen.NamedCol(into_out_pkey,
721
            sql_gen.Col(out_pkey, insert_out_pkeys))
722
        insert_into_pkeys(pkey_joins, [in_col, out_col])
723 3077 aaronmk
724
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
725
726 3531 aaronmk
    if limit_ref[0] == 0 or not is_function: # is_function doesn't leave holes
727 3187 aaronmk
        log_debug('Setting pkeys of missing rows to '
728 4492 aaronmk
            +strings.as_tt(strings.urepr(default)))
729 3287 aaronmk
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
730 3187 aaronmk
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
731
            # must use join_same_not_null or query will take forever
732
        insert_into_pkeys(missing_rows_joins,
733 3287 aaronmk
            [sql_gen.Col(in_pkey, full_in_table),
734 4484 aaronmk
            sql_gen.NamedCol(into_out_pkey, default)])
735 3187 aaronmk
    # otherwise, there is already an entry for every row
736 3077 aaronmk
737 3530 aaronmk
    assert (sql.table_row_count(db, into)
738
        == sql.table_row_count(db, full_in_table))
739
740
    sql.empty_temp(db, insert_in_tables+[full_in_table])
741
742
    srcs = []
743 3619 aaronmk
    if is_function: srcs = sql_gen.cols_srcs(in_cols)
744 4484 aaronmk
    return sql_gen.Col(into_out_pkey, into, srcs)