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Revision 5064

Added by Aaron Marcuse-Kubitza about 12 years ago

mappings/VegCore-VegBIEN.csv: Mapped verbatimScientificNameWithAuthorship, so that it links a verbatim taxonpath to the scrubbed taxonpath created from the primary taxonomic terms

View differences:

inputs/.TNRS/tnrs/VegBIEN.csv
8 8 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
9 9 
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
10 10 
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
11 
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonpath:[@fkey=canon_taxonpath_id]/taxonomicnamewithauthor,
11 12 
Accepted_name_lsid,,** No non-empty join mapping for OMIT **
12 13 
Accepted_name_species,,** No non-empty join mapping for OMIT ** Also contains genus. Omitted because Accepted_name contains more info.
13 14 
Accepted_name_url,,** No non-empty join mapping for OMIT **
......
31 32 
Name_matched_url,,** No non-empty join mapping for OMIT **
32 33 
Name_number,,** No non-empty join mapping for OMIT **
33 34 
Name_score,,** No non-empty join mapping for OMIT **
34 
Name_submitted,,** No join mapping for verbatimScientificNameWithAuthorship **
35 35 
Overall_score,,** No non-empty join mapping for OMIT **
36 36 
Selected,,** No non-empty join mapping for OMIT **
37 37 
Source,,** No non-empty join mapping for OMIT **
inputs/.TNRS/tnrs/test.xml.ref
20 20 
                                            <2>$Accepted_name_author</2>
21 21 
                                        </_join_words>
22 22 
                                    </taxonomicnamewithauthor>
23 
                                    <taxonpath fkey="canon_taxonpath_id"><taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor></taxonpath>
23 24 
                                </taxonpath>
24 25 
                            </taxonpath_id>
25 26 
                        </taxondetermination>
......
29 30 
        </path>
30 31 
    </_simplifyPath>
31 32 
</VegBIEN>
32 
Inserted 7 new rows into database
33 
Inserted 9 new rows into database
inputs/.TNRS/tnrs/unmapped_terms.csv
1 
verbatimScientificNameWithAuthorship
2 1 
taxonomicStatus
mappings/VegCore-VegBIEN.csv
154 154 
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/7/_join_words:[1=fm.]/2,
155 155 
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/8/_join_words:[1=cult.]/2,
156 156 
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
157 
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonpath:[@fkey=canon_taxonpath_id]/taxonomicnamewithauthor,
157 158 
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety,
158 159 
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
159 160 
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
mappings/for_review/VegCore-VegBIEN.csv
154 154 
forma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
155 155 
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
156 156 
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
157 
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/taxonomicnamewithauthor,
157 158 
variety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/variety,
158 159 
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date,
159 160 
dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,

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