Revision 5657
Added by Aaron Marcuse-Kubitza about 12 years ago
| test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<locationevent> |
| 8 | 8 |
<taxonoccurrence> |
| 9 | 9 |
<taxondetermination> |
| 10 |
<taxonlabel_id>
|
|
| 11 |
<taxonlabel>
|
|
| 12 |
<_taxonlabel_set_matched_label_id>
|
|
| 13 |
<matched_label_id>
|
|
| 14 |
<taxonlabel>
|
|
| 15 |
<parent_id>
|
|
| 10 |
<taxonverbatim_id>
|
|
| 11 |
<taxonverbatim>
|
|
| 12 |
<taxonlabel_id>
|
|
| 13 |
<taxonlabel>
|
|
| 14 |
<_taxonlabel_set_matched_label_id>
|
|
| 15 |
<matched_label_id>
|
|
| 16 | 16 |
<taxonlabel> |
| 17 | 17 |
<parent_id> |
| 18 | 18 |
<taxonlabel> |
| 19 |
<rank>cultivar</rank> |
|
| 20 | 19 |
<parent_id> |
| 21 | 20 |
<taxonlabel> |
| 22 |
<rank>forma</rank>
|
|
| 21 |
<rank>cultivar</rank>
|
|
| 23 | 22 |
<parent_id> |
| 24 | 23 |
<taxonlabel> |
| 25 |
<rank>variety</rank>
|
|
| 24 |
<rank>forma</rank>
|
|
| 26 | 25 |
<parent_id> |
| 27 | 26 |
<taxonlabel> |
| 28 |
<rank>subspecies</rank>
|
|
| 27 |
<rank>variety</rank>
|
|
| 29 | 28 |
<parent_id> |
| 30 | 29 |
<taxonlabel> |
| 31 |
<rank>species</rank> |
|
| 30 |
<rank>subspecies</rank>
|
|
| 32 | 31 |
<parent_id> |
| 33 | 32 |
<taxonlabel> |
| 34 |
<rank>genus</rank>
|
|
| 33 |
<rank>species</rank>
|
|
| 35 | 34 |
<parent_id> |
| 36 | 35 |
<taxonlabel> |
| 37 |
<rank>family</rank>
|
|
| 38 |
<matched_label_id>
|
|
| 36 |
<rank>genus</rank>
|
|
| 37 |
<parent_id>
|
|
| 39 | 38 |
<taxonlabel> |
| 40 |
<creator_id> |
|
| 41 |
<party> |
|
| 42 |
<creator_id>0</creator_id> |
|
| 43 |
<organizationname>NCBI</organizationname> |
|
| 44 |
</party> |
|
| 45 |
</creator_id> |
|
| 46 | 39 |
<rank>family</rank> |
| 40 |
<matched_label_id> |
|
| 41 |
<taxonlabel> |
|
| 42 |
<creator_id> |
|
| 43 |
<party> |
|
| 44 |
<creator_id>0</creator_id> |
|
| 45 |
<organizationname>NCBI</organizationname> |
|
| 46 |
</party> |
|
| 47 |
</creator_id> |
|
| 48 |
<rank>family</rank> |
|
| 49 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
|
| 50 |
</taxonlabel> |
|
| 51 |
</matched_label_id> |
|
| 47 | 52 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
| 48 | 53 |
</taxonlabel> |
| 49 |
</matched_label_id> |
|
| 50 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
|
| 54 |
</parent_id> |
|
| 51 | 55 |
</taxonlabel> |
| 52 | 56 |
</parent_id> |
| 53 | 57 |
</taxonlabel> |
| ... | ... | |
| 60 | 64 |
</parent_id> |
| 61 | 65 |
</taxonlabel> |
| 62 | 66 |
</parent_id> |
| 67 |
<rank>$Accepted_name_rank</rank> |
|
| 68 |
<taxonverbatim><verbatimrank>$Accepted_name_rank</verbatimrank></taxonverbatim> |
|
| 63 | 69 |
</taxonlabel> |
| 64 | 70 |
</parent_id> |
| 65 | 71 |
<rank>$Accepted_name_rank</rank> |
| 66 |
<taxonverbatim><verbatimrank>$Accepted_name_rank</verbatimrank></taxonverbatim> |
|
| 72 |
<taxonomicname> |
|
| 73 |
<_join_words> |
|
| 74 |
<1> |
|
| 75 |
<_alt> |
|
| 76 |
<1>$Accepted_name</1> |
|
| 77 |
<2>$Accepted_name_family</2> |
|
| 78 |
</_alt> |
|
| 79 |
</1> |
|
| 80 |
<2>$Accepted_name_author</2> |
|
| 81 |
</_join_words> |
|
| 82 |
</taxonomicname> |
|
| 83 |
<taxonverbatim> |
|
| 84 |
<author>$Accepted_name_author</author> |
|
| 85 |
<binomial>$Accepted_name</binomial> |
|
| 86 |
<family>$Accepted_name_family</family> |
|
| 87 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
|
| 88 |
</taxonverbatim> |
|
| 67 | 89 |
</taxonlabel> |
| 68 |
</parent_id> |
|
| 69 |
<rank>$Accepted_name_rank</rank> |
|
| 70 |
<taxonomicname> |
|
| 71 |
<_join_words> |
|
| 72 |
<1> |
|
| 73 |
<_alt> |
|
| 74 |
<1>$Accepted_name</1> |
|
| 75 |
<2>$Accepted_name_family</2> |
|
| 76 |
</_alt> |
|
| 77 |
</1> |
|
| 78 |
<2>$Accepted_name_author</2> |
|
| 79 |
</_join_words> |
|
| 80 |
</taxonomicname> |
|
| 81 |
<taxonverbatim> |
|
| 82 |
<author>$Accepted_name_author</author> |
|
| 83 |
<binomial>$Accepted_name</binomial> |
|
| 84 |
<family>$Accepted_name_family</family> |
|
| 85 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
|
| 86 |
</taxonverbatim> |
|
| 87 |
</taxonlabel> |
|
| 88 |
</matched_label_id> |
|
| 89 |
</_taxonlabel_set_matched_label_id> |
|
| 90 |
<parent_id> |
|
| 91 |
<taxonlabel> |
|
| 92 |
<rank>$Name_matched_rank</rank> |
|
| 93 |
<taxonverbatim><verbatimrank>$Name_matched_rank</verbatimrank></taxonverbatim> |
|
| 90 |
</matched_label_id> |
|
| 91 |
</_taxonlabel_set_matched_label_id> |
|
| 94 | 92 |
<parent_id> |
| 95 | 93 |
<taxonlabel> |
| 96 |
<rank>cultivar</rank> |
|
| 94 |
<rank>$Name_matched_rank</rank> |
|
| 95 |
<taxonverbatim><verbatimrank>$Name_matched_rank</verbatimrank></taxonverbatim> |
|
| 97 | 96 |
<parent_id> |
| 98 | 97 |
<taxonlabel> |
| 99 |
<rank>forma</rank>
|
|
| 98 |
<rank>cultivar</rank>
|
|
| 100 | 99 |
<parent_id> |
| 101 | 100 |
<taxonlabel> |
| 102 |
<rank>variety</rank>
|
|
| 101 |
<rank>forma</rank>
|
|
| 103 | 102 |
<parent_id> |
| 104 | 103 |
<taxonlabel> |
| 105 |
<rank>subspecies</rank>
|
|
| 104 |
<rank>variety</rank>
|
|
| 106 | 105 |
<parent_id> |
| 107 | 106 |
<taxonlabel> |
| 108 |
<rank>species</rank> |
|
| 109 |
<taxonepithet>$Specific_epithet_matched</taxonepithet> |
|
| 107 |
<rank>subspecies</rank> |
|
| 110 | 108 |
<parent_id> |
| 111 | 109 |
<taxonlabel> |
| 112 |
<rank>genus</rank>
|
|
| 113 |
<taxonepithet>$Genus_matched</taxonepithet>
|
|
| 110 |
<rank>species</rank>
|
|
| 111 |
<taxonepithet>$Specific_epithet_matched</taxonepithet>
|
|
| 114 | 112 |
<parent_id> |
| 115 | 113 |
<taxonlabel> |
| 116 |
<rank>family</rank> |
|
| 117 |
<taxonepithet>$Name_matched_accepted_family</taxonepithet> |
|
| 114 |
<rank>genus</rank> |
|
| 115 |
<taxonepithet>$Genus_matched</taxonepithet> |
|
| 116 |
<parent_id> |
|
| 117 |
<taxonlabel> |
|
| 118 |
<rank>family</rank> |
|
| 119 |
<taxonepithet>$Name_matched_accepted_family</taxonepithet> |
|
| 120 |
</taxonlabel> |
|
| 121 |
</parent_id> |
|
| 118 | 122 |
</taxonlabel> |
| 119 | 123 |
</parent_id> |
| 120 | 124 |
</taxonlabel> |
| ... | ... | |
| 127 | 131 |
</parent_id> |
| 128 | 132 |
</taxonlabel> |
| 129 | 133 |
</parent_id> |
| 134 |
<taxonepithet>$Infraspecific_epithet_matched</taxonepithet> |
|
| 130 | 135 |
</taxonlabel> |
| 131 | 136 |
</parent_id> |
| 132 |
<taxonepithet>$Infraspecific_epithet_matched</taxonepithet> |
|
| 133 |
</taxonlabel> |
|
| 134 |
</parent_id> |
|
| 135 |
<rank>$Name_matched_rank</rank> |
|
| 136 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
|
| 137 |
<taxonlabel fkey="matched_label_id"> |
|
| 138 |
<matched_label_fit_fraction> |
|
| 139 |
<_max> |
|
| 140 |
<1>$Family_score</1> |
|
| 141 |
<2>$Genus_score</2> |
|
| 142 |
<3>$Specific_epithet_score</3> |
|
| 143 |
<4>$Overall_score</4> |
|
| 144 |
</_max> |
|
| 145 |
</matched_label_fit_fraction> |
|
| 146 |
<taxonomicname>$Name_submitted</taxonomicname> |
|
| 147 |
<taxonverbatim> |
|
| 148 |
<author>$Author_matched</author> |
|
| 149 |
<binomial>$Name_matched</binomial> |
|
| 150 |
<family>$Family_matched</family> |
|
| 151 |
<genus>$Genus_matched</genus> |
|
| 152 |
<morphospecies>$Unmatched_terms</morphospecies> |
|
| 153 |
<species>$Specific_epithet_matched</species> |
|
| 154 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
|
| 155 |
</taxonverbatim> |
|
| 156 |
</taxonlabel> |
|
| 157 |
<taxonomicname> |
|
| 158 |
<_join_words> |
|
| 159 |
<1> |
|
| 160 |
<_alt> |
|
| 161 |
<1>$Name_matched</1> |
|
| 162 |
<2> |
|
| 163 |
<_join_words> |
|
| 164 |
<1>$Name_matched_accepted_family</1> |
|
| 165 |
<2>$Genus_matched</2> |
|
| 166 |
<3>$Specific_epithet_matched</3> |
|
| 167 |
<5> |
|
| 137 |
<rank>$Name_matched_rank</rank> |
|
| 138 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
|
| 139 |
<taxonlabel fkey="matched_label_id"> |
|
| 140 |
<matched_label_fit_fraction> |
|
| 141 |
<_max> |
|
| 142 |
<1>$Family_score</1> |
|
| 143 |
<2>$Genus_score</2> |
|
| 144 |
<3>$Specific_epithet_score</3> |
|
| 145 |
<4>$Overall_score</4> |
|
| 146 |
</_max> |
|
| 147 |
</matched_label_fit_fraction> |
|
| 148 |
<taxonomicname>$Name_submitted</taxonomicname> |
|
| 149 |
<taxonverbatim> |
|
| 150 |
<author>$Author_matched</author> |
|
| 151 |
<binomial>$Name_matched</binomial> |
|
| 152 |
<family>$Family_matched</family> |
|
| 153 |
<genus>$Genus_matched</genus> |
|
| 154 |
<morphospecies>$Unmatched_terms</morphospecies> |
|
| 155 |
<species>$Specific_epithet_matched</species> |
|
| 156 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
|
| 157 |
</taxonverbatim> |
|
| 158 |
</taxonlabel> |
|
| 159 |
<taxonomicname> |
|
| 160 |
<_join_words> |
|
| 161 |
<1> |
|
| 162 |
<_alt> |
|
| 163 |
<1>$Name_matched</1> |
|
| 164 |
<2> |
|
| 168 | 165 |
<_join_words> |
| 169 |
<1> |
|
| 170 |
<_if name="if has infraspecificEpithet"> |
|
| 171 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 172 |
<then>$Name_matched_rank</then> |
|
| 173 |
</_if> |
|
| 174 |
</1> |
|
| 175 |
<2>$Infraspecific_epithet_matched</2> |
|
| 166 |
<1>$Name_matched_accepted_family</1> |
|
| 167 |
<2>$Genus_matched</2> |
|
| 168 |
<3>$Specific_epithet_matched</3> |
|
| 169 |
<5> |
|
| 170 |
<_join_words> |
|
| 171 |
<1> |
|
| 172 |
<_if name="if has infraspecificEpithet"> |
|
| 173 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 174 |
<then>$Name_matched_rank</then> |
|
| 175 |
</_if> |
|
| 176 |
</1> |
|
| 177 |
<2>$Infraspecific_epithet_matched</2> |
|
| 178 |
</_join_words> |
|
| 179 |
</5> |
|
| 176 | 180 |
</_join_words> |
| 177 |
</5> |
|
| 178 |
</_join_words> |
|
| 179 |
</2> |
|
| 180 |
</_alt> |
|
| 181 |
</1> |
|
| 182 |
<2>$Name_matched_author</2> |
|
| 183 |
</_join_words> |
|
| 184 |
</taxonomicname> |
|
| 185 |
<taxonstatus>$Taxonomic_status</taxonstatus> |
|
| 186 |
<taxonverbatim> |
|
| 187 |
<author>$Name_matched_author</author> |
|
| 188 |
<binomial>$Name_matched</binomial> |
|
| 189 |
<family>$Name_matched_accepted_family</family> |
|
| 190 |
<genus>$Genus_matched</genus> |
|
| 191 |
<species>$Specific_epithet_matched</species> |
|
| 192 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
|
| 193 |
</taxonverbatim> |
|
| 194 |
</taxonlabel> |
|
| 195 |
</taxonlabel_id> |
|
| 181 |
</2> |
|
| 182 |
</_alt> |
|
| 183 |
</1> |
|
| 184 |
<2>$Name_matched_author</2> |
|
| 185 |
</_join_words> |
|
| 186 |
</taxonomicname> |
|
| 187 |
<taxonstatus>$Taxonomic_status</taxonstatus> |
|
| 188 |
</taxonlabel> |
|
| 189 |
</taxonlabel_id> |
|
| 190 |
<author>$Name_matched_author</author> |
|
| 191 |
<binomial>$Name_matched</binomial> |
|
| 192 |
<family>$Name_matched_accepted_family</family> |
|
| 193 |
<genus>$Genus_matched</genus> |
|
| 194 |
<species>$Specific_epithet_matched</species> |
|
| 195 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
|
| 196 |
</taxonverbatim> |
|
| 197 |
</taxonverbatim_id> |
|
| 196 | 198 |
</taxondetermination> |
| 197 | 199 |
</taxonoccurrence> |
| 198 | 200 |
</locationevent> |
Also available in: Unified diff
schemas/vegbien.sql: Link taxondetermination to taxonverbatim (which is a subclass of taxonlabel) instead of directly to taxonlabel. This will enable later having multiple taxonverbatims for one taxonlabel.