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537
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aaronmk
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-- Existing tables
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CREATE TABLE aux_role
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(
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role_id int(11) NOT NULL AUTO_INCREMENT,
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rolecode character varying(30) NOT NULL,
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roledescription character varying(200),
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CONSTRAINT aux_role_pkey PRIMARY KEY (role_id )
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);
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CREATE TABLE reference
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(
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reference_id int(11) NOT NULL AUTO_INCREMENT,
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shortname character varying(250),
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fulltext__ text,
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referencetype character varying(250)
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);
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CREATE TABLE party
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(
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party_id int(11) NOT NULL AUTO_INCREMENT,
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salutation character varying(20),
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givenname character varying(50),
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middlename character varying(50),
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surname character varying(50),
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organizationname character varying(100)
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);
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CREATE TABLE plantname
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(
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plantname_id int(11) NOT NULL AUTO_INCREMENT,
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plantname character varying(255) NOT NULL,
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reference_id int(11),
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dateentered timestamp DEFAULT now(),
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CONSTRAINT plantname_pkey PRIMARY KEY (plantname_id ),
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CONSTRAINT plantname_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE
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);
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CREATE TABLE plantconcept
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(
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plantconcept_id int(11) NOT NULL AUTO_INCREMENT,
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plantname_id int(11) NOT NULL,
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reference_id int(11) NOT NULL,
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plantname character varying(200),
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plantcode character varying(23),
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plantdescription text,
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d_obscount int(11),
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d_currentaccepted int(1),
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accessioncode character varying(255),
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CONSTRAINT plantconcept_pkey PRIMARY KEY (plantconcept_id ),
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CONSTRAINT plantconcept_plantname_id FOREIGN KEY (plantname_id)
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REFERENCES plantname (plantname_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT plantconcept_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE
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);
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CREATE TABLE namedplace
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(
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namedplace_id int(11) NOT NULL AUTO_INCREMENT,
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placesystem character varying(50),
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placename character varying(100) NOT NULL,
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placedescription text,
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placecode character varying(15),
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owner character varying(100),
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reference_id int(11),
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d_obscount int(11),
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accessioncode character varying(255),
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CONSTRAINT namedplace_pkey PRIMARY KEY (namedplace_id ),
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CONSTRAINT namedplace_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT namedplace_keys UNIQUE (placesystem , placename )
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);
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566
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aaronmk
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CREATE TABLE locationplace
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552
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aaronmk
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(
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locationplace_id int(11) NOT NULL AUTO_INCREMENT,
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location_id int(11) NOT NULL,
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calculated int(1),
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namedplace_id int(11) NOT NULL,
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566
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aaronmk
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CONSTRAINT locationplace_pkey PRIMARY KEY (locationplace_id ),
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CONSTRAINT locationplace_location_id FOREIGN KEY (location_id)
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552
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aaronmk
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REFERENCES location (location_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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566
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aaronmk
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CONSTRAINT locationplace_namedplace_id FOREIGN KEY (namedplace_id)
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552
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aaronmk
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REFERENCES namedplace (namedplace_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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566
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aaronmk
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CONSTRAINT locationplace_keys UNIQUE (location_id , namedplace_id )
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552
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aaronmk
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);
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537
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aaronmk
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CREATE TABLE project
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(
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project_id int(11) NOT NULL AUTO_INCREMENT,
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projectname character varying(150) NOT NULL,
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projectdescription text,
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startdate timestamp,
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stopdate timestamp,
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d_obscount int(11),
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d_lastlocationaddeddate timestamp,
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accessioncode character varying(255),
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CONSTRAINT project_pkey PRIMARY KEY (project_id ),
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CONSTRAINT project_keys UNIQUE (projectname , startdate , stopdate )
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);
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-- New tables
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536
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aaronmk
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CREATE TABLE location
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(
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location_id int(11) NOT NULL AUTO_INCREMENT,
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570
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aaronmk
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authorlocationcode character varying(30),
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536
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aaronmk
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reference_id int(11),
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parent_id int(11),
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reallatitude double precision,
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reallongitude double precision,
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locationaccuracy double precision,
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confidentialitystatus int(11) NOT NULL,
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confidentialityreason character varying(200),
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latitude double precision,
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longitude double precision,
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| 124 |
561
|
aaronmk
|
`... (truncated) ...` int(11),
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| 125 |
536
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aaronmk
|
accessioncode character varying(255),
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sublocationxposition double precision,
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sublocationyposition double precision,
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namedplace_id int(11),
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CONSTRAINT location_pkey PRIMARY KEY (location_id ),
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| 130 |
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CONSTRAINT location_namedplace_id FOREIGN KEY (namedplace_id)
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REFERENCES namedplace (namedplace_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 133 |
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CONSTRAINT location_parent_id FOREIGN KEY (parent_id)
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| 134 |
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REFERENCES location (location_id) MATCH SIMPLE
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| 135 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 136 |
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CONSTRAINT location_reference_id FOREIGN KEY (reference_id)
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| 137 |
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REFERENCES reference (reference_id) MATCH SIMPLE
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| 138 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 139 |
570
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aaronmk
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CONSTRAINT location_keys UNIQUE (reference_id , parent_id , authorlocationcode )
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| 140 |
536
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aaronmk
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);
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| 141 |
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| 142 |
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CREATE TABLE locationevent -- VegBank's observation table.
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| 143 |
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(
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locationevent_id int(11) NOT NULL AUTO_INCREMENT,
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| 145 |
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previous_id int(11),
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| 146 |
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location_id int(11) NOT NULL,
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| 147 |
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project_id int(11),
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| 148 |
570
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aaronmk
|
authoreventcode character varying(30),
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| 149 |
561
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aaronmk
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`... (truncated) ...` int(11),
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| 150 |
536
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aaronmk
|
accessioncode character varying(255),
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| 151 |
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CONSTRAINT locationevent_pkey PRIMARY KEY (locationevent_id ),
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| 152 |
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CONSTRAINT locationevent_location_id FOREIGN KEY (location_id)
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| 153 |
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REFERENCES location (location_id) MATCH SIMPLE
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| 154 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 155 |
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CONSTRAINT locationevent_project_id FOREIGN KEY (project_id)
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| 156 |
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REFERENCES project (project_id) MATCH SIMPLE
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| 157 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 158 |
570
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aaronmk
|
CONSTRAINT locationevent_keys UNIQUE (location_id , project_id , authoreventcode )
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| 159 |
536
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aaronmk
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);
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| 160 |
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| 161 |
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CREATE TABLE taxonoccurrence -- VegBank's taxonobservation table.
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| 162 |
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(
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| 163 |
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taxonoccurrence_id int(11) NOT NULL AUTO_INCREMENT,
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| 164 |
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locationevent_id int(11) NOT NULL,
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| 165 |
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authorplantname character varying(255),
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| 166 |
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reference_id int(11),
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| 167 |
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taxoninferencearea double precision,
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| 168 |
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emb_taxonoccurrence int(11),
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| 169 |
561
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aaronmk
|
`... (truncated) ...` int(11),
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| 170 |
536
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aaronmk
|
accessioncode character varying(255),
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| 171 |
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CONSTRAINT taxonoccurrence_pkey PRIMARY KEY (taxonoccurrence_id ),
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| 172 |
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CONSTRAINT taxonoccurrence_locationevent_id FOREIGN KEY (locationevent_id)
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REFERENCES locationevent (locationevent_id) MATCH SIMPLE
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| 174 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 175 |
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CONSTRAINT taxonoccurrence_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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| 177 |
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ON UPDATE CASCADE ON DELETE CASCADE
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| 178 |
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);
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| 179 |
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| 180 |
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CREATE TABLE aggregateoccurrence -- VegBank's taxonimportance table.
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| 181 |
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(
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| 182 |
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aggregateoccurrence_id int(11) NOT NULL AUTO_INCREMENT,
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| 183 |
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taxonoccurrence_id int(11) NOT NULL,
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| 184 |
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taxonbin_id int(11),
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| 185 |
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cover double precision,
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| 186 |
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basalarea double precision,
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| 187 |
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biomass double precision,
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| 188 |
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inferencearea double precision,
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| 189 |
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stratumbase double precision,
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| 190 |
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stratumheight double precision,
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| 191 |
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emb_aggregateoccurrence int(11),
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| 192 |
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covercode character varying(10),
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| 193 |
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count int(11) NOT NULL,
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| 194 |
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accessioncode character varying(255),
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| 195 |
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CONSTRAINT aggregateoccurrence_pkey PRIMARY KEY (aggregateoccurrence_id ),
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| 196 |
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CONSTRAINT aggregateoccurrence_taxonbin_id FOREIGN KEY (taxonbin_id)
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| 197 |
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REFERENCES taxonbin (taxonbin_id) MATCH SIMPLE
|
| 198 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 199 |
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CONSTRAINT aggregateoccurrence_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
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| 200 |
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REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
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| 201 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 202 |
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CONSTRAINT aggregateoccurrence_keys UNIQUE (taxonoccurrence_id , taxonbin_id )
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| 203 |
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);
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| 204 |
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| 205 |
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CREATE TABLE individualplant -- VegBank's stemcount table.
|
| 206 |
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(
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| 207 |
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individualplant_id int(11) NOT NULL AUTO_INCREMENT,
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| 208 |
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aggregateoccurrence_id int(11) NOT NULL,
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| 209 |
563
|
aaronmk
|
overallheight double precision,
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| 210 |
|
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overallheightaccuracy double precision,
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| 211 |
536
|
aaronmk
|
emb_individualplant int(11),
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| 212 |
570
|
aaronmk
|
authorplantcode character varying(20),
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| 213 |
536
|
aaronmk
|
accessioncode character varying(255),
|
| 214 |
|
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stemcount int(11),
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| 215 |
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CONSTRAINT individualplant_pkey PRIMARY KEY (individualplant_id ),
|
| 216 |
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CONSTRAINT individualplant_aggregateoccurrence_id FOREIGN KEY (aggregateoccurrence_id)
|
| 217 |
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REFERENCES aggregateoccurrence (aggregateoccurrence_id) MATCH SIMPLE
|
| 218 |
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ON UPDATE CASCADE ON DELETE CASCADE,
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| 219 |
570
|
aaronmk
|
CONSTRAINT individualplant_keys UNIQUE (aggregateoccurrence_id , authorplantcode )
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| 220 |
536
|
aaronmk
|
);
|
| 221 |
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| 222 |
|
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CREATE TABLE stem -- VegBank's stemlocation table.
|
| 223 |
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(
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| 224 |
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stem_id int(11) NOT NULL AUTO_INCREMENT,
|
| 225 |
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individualplant_id int(11) NOT NULL,
|
| 226 |
570
|
aaronmk
|
authorstemcode character varying(20),
|
| 227 |
536
|
aaronmk
|
xposition double precision,
|
| 228 |
|
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yposition double precision,
|
| 229 |
|
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health character varying(50),
|
| 230 |
|
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emb_stem int(11),
|
| 231 |
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diameter double precision,
|
| 232 |
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height double precision,
|
| 233 |
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heightaccuracy double precision,
|
| 234 |
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age double precision,
|
| 235 |
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accessioncode character varying(255),
|
| 236 |
556
|
aaronmk
|
diameteraccuracy double precision,
|
| 237 |
536
|
aaronmk
|
CONSTRAINT stem_pkey PRIMARY KEY (stem_id ),
|
| 238 |
|
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CONSTRAINT stem_individualplant_id FOREIGN KEY (individualplant_id)
|
| 239 |
|
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REFERENCES individualplant (individualplant_id) MATCH SIMPLE
|
| 240 |
|
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ON UPDATE CASCADE ON DELETE CASCADE,
|
| 241 |
570
|
aaronmk
|
CONSTRAINT stem_keys UNIQUE (individualplant_id , authorstemcode )
|
| 242 |
536
|
aaronmk
|
);
|
| 243 |
|
|
|
| 244 |
537
|
aaronmk
|
CREATE TABLE specimen -- A herbarium specimen. Contains Darwin Core specimen data.
|
| 245 |
|
|
(
|
| 246 |
|
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specimen_id int(11) NOT NULL AUTO_INCREMENT,
|
| 247 |
|
|
reference_id int(11) NOT NULL,
|
| 248 |
|
|
collectioncode_dwc character varying(255),
|
| 249 |
|
|
catalognumber_dwc character varying(255),
|
| 250 |
|
|
collectiondate timestamp,
|
| 251 |
|
|
collector_id int(11),
|
| 252 |
|
|
museum_id int(11),
|
| 253 |
|
|
sourceaccessionnumber character varying(100),
|
| 254 |
|
|
accessioncode character varying(255),
|
| 255 |
|
|
taxonoccurrence_id int(11),
|
| 256 |
572
|
aaronmk
|
collectornumber_dwc character varying(255),
|
| 257 |
537
|
aaronmk
|
CONSTRAINT specimen_pkey PRIMARY KEY (specimen_id ),
|
| 258 |
|
|
CONSTRAINT specimen_collector_id FOREIGN KEY (collector_id)
|
| 259 |
|
|
REFERENCES party (party_id) MATCH SIMPLE
|
| 260 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 261 |
|
|
CONSTRAINT specimen_museum_id FOREIGN KEY (museum_id)
|
| 262 |
|
|
REFERENCES party (party_id) MATCH SIMPLE
|
| 263 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 264 |
|
|
CONSTRAINT specimen_reference_id_fkey FOREIGN KEY (reference_id)
|
| 265 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 266 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 267 |
|
|
CONSTRAINT specimen_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 268 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 269 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 270 |
|
|
CONSTRAINT specimen_keys UNIQUE (reference_id , collectioncode_dwc , catalognumber_dwc )
|
| 271 |
|
|
);
|
| 272 |
|
|
|
| 273 |
544
|
aaronmk
|
CREATE TABLE voucher
|
| 274 |
|
|
(
|
| 275 |
|
|
voucher_id int(11) NOT NULL AUTO_INCREMENT,
|
| 276 |
545
|
aaronmk
|
taxonoccurrence_id int(11) NOT NULL,
|
| 277 |
|
|
specimen_id int(11) NOT NULL,
|
| 278 |
544
|
aaronmk
|
accessioncode character varying(255),
|
| 279 |
|
|
CONSTRAINT voucher_pkey PRIMARY KEY (voucher_id ),
|
| 280 |
|
|
CONSTRAINT voucher_specimen_id FOREIGN KEY (specimen_id)
|
| 281 |
|
|
REFERENCES specimen (specimen_id) MATCH SIMPLE
|
| 282 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 283 |
|
|
CONSTRAINT voucher_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 284 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 285 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 286 |
|
|
CONSTRAINT voucher_keys UNIQUE (taxonoccurrence_id , specimen_id )
|
| 287 |
|
|
);
|
| 288 |
|
|
|
| 289 |
536
|
aaronmk
|
CREATE TABLE taxondetermination -- VegBank's taxoninterpretation table.
|
| 290 |
|
|
(
|
| 291 |
|
|
taxondetermination_id int(11) NOT NULL AUTO_INCREMENT,
|
| 292 |
|
|
taxonoccurrence_id int(11) NOT NULL,
|
| 293 |
|
|
plantconcept_id int(11) NOT NULL,
|
| 294 |
|
|
party_id int(11) NOT NULL,
|
| 295 |
|
|
role_id int(11) NOT NULL,
|
| 296 |
|
|
determinationtype character varying(30),
|
| 297 |
|
|
reference_id int(11),
|
| 298 |
|
|
originaldetermination int(1) NOT NULL,
|
| 299 |
|
|
currentdetermination int(1) NOT NULL,
|
| 300 |
|
|
taxonfit character varying(50),
|
| 301 |
|
|
taxonconfidence character varying(50),
|
| 302 |
|
|
grouptype character varying(20),
|
| 303 |
|
|
notes text,
|
| 304 |
|
|
notespublic int(1),
|
| 305 |
|
|
notesmgt int(1),
|
| 306 |
|
|
revisions int(1),
|
| 307 |
537
|
aaronmk
|
determinationdate timestamp NOT NULL,
|
| 308 |
536
|
aaronmk
|
emb_taxondetermination int(11),
|
| 309 |
|
|
accessioncode character varying(255),
|
| 310 |
|
|
CONSTRAINT taxondetermination_pkey PRIMARY KEY (taxondetermination_id ),
|
| 311 |
|
|
CONSTRAINT taxondetermination_party_id FOREIGN KEY (party_id)
|
| 312 |
|
|
REFERENCES party (party_id) MATCH SIMPLE
|
| 313 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 314 |
|
|
CONSTRAINT taxondetermination_plantconcept_id FOREIGN KEY (plantconcept_id)
|
| 315 |
|
|
REFERENCES plantconcept (plantconcept_id) MATCH SIMPLE
|
| 316 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 317 |
|
|
CONSTRAINT taxondetermination_reference_id FOREIGN KEY (reference_id)
|
| 318 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 319 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 320 |
|
|
CONSTRAINT taxondetermination_role_id FOREIGN KEY (role_id)
|
| 321 |
|
|
REFERENCES aux_role (role_id) MATCH SIMPLE
|
| 322 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 323 |
|
|
CONSTRAINT taxondetermination_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 324 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 325 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 326 |
|
|
);
|
| 327 |
|
|
|
| 328 |
552
|
aaronmk
|
CREATE TABLE stratum
|
| 329 |
|
|
(
|
| 330 |
|
|
stratum_id int(11) NOT NULL AUTO_INCREMENT,
|
| 331 |
|
|
locationevent_id int(11) NOT NULL,
|
| 332 |
|
|
stratumtype_id int(11) NOT NULL,
|
| 333 |
|
|
stratummethod_id int(11),
|
| 334 |
|
|
stratumname character varying(30),
|
| 335 |
|
|
stratumheight double precision,
|
| 336 |
|
|
stratumbase double precision,
|
| 337 |
|
|
stratumcover double precision,
|
| 338 |
|
|
stratumdescription character varying(200),
|
| 339 |
|
|
CONSTRAINT stratum_pkey PRIMARY KEY (stratum_id ),
|
| 340 |
|
|
CONSTRAINT stratum_locationevent_id FOREIGN KEY (locationevent_id)
|
| 341 |
|
|
REFERENCES locationevent (locationevent_id) MATCH SIMPLE
|
| 342 |
559
|
aaronmk
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 343 |
552
|
aaronmk
|
);
|
| 344 |
|
|
|
| 345 |
537
|
aaronmk
|
CREATE TABLE sizeclass -- A range of size measurements used to aggregate organisms.
|
| 346 |
536
|
aaronmk
|
(
|
| 347 |
537
|
aaronmk
|
sizeclass_id int(11) NOT NULL AUTO_INCREMENT,
|
| 348 |
|
|
mindiameter double precision,
|
| 349 |
|
|
minheight double precision,
|
| 350 |
|
|
maxdiameter double precision,
|
| 351 |
|
|
maxheight double precision,
|
| 352 |
536
|
aaronmk
|
accessioncode character varying(255),
|
| 353 |
537
|
aaronmk
|
CONSTRAINT sizeclass_pkey PRIMARY KEY (sizeclass_id )
|
| 354 |
536
|
aaronmk
|
);
|
| 355 |
|
|
|
| 356 |
|
|
CREATE TABLE taxonbin -- Defines a set of aggregate measurements. Used by aggregateoccurrence to define how measurements were aggregated.
|
| 357 |
|
|
(
|
| 358 |
|
|
taxonbin_id int(11) NOT NULL,
|
| 359 |
|
|
label character varying(255) NOT NULL,
|
| 360 |
|
|
stratum_id int(11),
|
| 361 |
|
|
sizeclass_id int(11),
|
| 362 |
|
|
coverindex_id int(11),
|
| 363 |
|
|
accessioncode character varying(255),
|
| 364 |
567
|
aaronmk
|
count int(11) NOT NULL,
|
| 365 |
536
|
aaronmk
|
CONSTRAINT taxonbin_pkey PRIMARY KEY (taxonbin_id ),
|
| 366 |
|
|
CONSTRAINT taxonbin_sizeclass_id FOREIGN KEY (sizeclass_id)
|
| 367 |
|
|
REFERENCES sizeclass (sizeclass_id) MATCH SIMPLE
|
| 368 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 369 |
|
|
);
|
