Revision 5974
Added by Aaron Marcuse-Kubitza about 12 years ago
| verify.specimens.sql | ||
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SELECT '# specimen replicates' AS ___; |
| 2 | 2 |
SELECT count(*) AS count |
| 3 | 3 |
FROM specimenreplicate |
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WHERE datasource_id =
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(SELECT party_id FROM party WHERE organizationname = :datasource)
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WHERE reference_id =
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(SELECT reference_id FROM reference WHERE shortname = :datasource)
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| 6 | 6 |
; |
| 7 | 7 |
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| 8 | 8 |
SELECT '# families' AS ___; |
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SELECT count(DISTINCT plantname.plantname_id) AS count |
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FROM specimenreplicate |
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JOIN taxondetermination USING (taxonoccurrence_id) |
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JOIN plantconcept USING (plantconcept_id) |
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JOIN plantname_ancestor USING (plantname_id) |
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JOIN plantname |
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ON plantname.plantname_id = plantname_ancestor.ancestor_id |
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AND plantname.rank = 'family' |
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WHERE datasource_id = |
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(SELECT party_id FROM party WHERE organizationname = :datasource) |
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AND taxondetermination.isoriginal |
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SELECT count(DISTINCT family) AS count |
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FROM taxonlabel |
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JOIN taxonverbatim USING (taxonlabel_id) |
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WHERE reference_id = |
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(SELECT reference_id FROM reference WHERE shortname = :datasource) |
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| 20 | 14 |
; |
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| 22 | 16 |
SELECT '# genera' AS ___; |
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SELECT count(DISTINCT plantname.plantname_id) AS count |
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FROM specimenreplicate |
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JOIN taxondetermination USING (taxonoccurrence_id) |
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JOIN plantconcept USING (plantconcept_id) |
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JOIN plantname_ancestor USING (plantname_id) |
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JOIN plantname |
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ON plantname.plantname_id = plantname_ancestor.ancestor_id |
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AND plantname.rank = 'genus' |
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WHERE datasource_id = |
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(SELECT party_id FROM party WHERE organizationname = :datasource) |
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AND taxondetermination.isoriginal |
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SELECT count(DISTINCT genus) AS count |
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FROM taxonlabel |
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JOIN taxonverbatim USING (taxonlabel_id) |
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WHERE reference_id = |
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(SELECT reference_id FROM reference WHERE shortname = :datasource) |
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| 34 | 22 |
; |
| 35 | 23 |
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| 36 | 24 |
SELECT '# species' AS ___; |
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SELECT count(DISTINCT plantname.plantname_id) AS count |
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FROM specimenreplicate |
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JOIN taxondetermination USING (taxonoccurrence_id) |
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JOIN plantconcept USING (plantconcept_id) |
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JOIN plantname_ancestor USING (plantname_id) |
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JOIN plantname |
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ON plantname.plantname_id = plantname_ancestor.ancestor_id |
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AND plantname.rank = 'species' |
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WHERE datasource_id = |
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(SELECT party_id FROM party WHERE organizationname = :datasource) |
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AND taxondetermination.isoriginal |
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SELECT count(DISTINCT specific_epithet) AS count |
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FROM taxonlabel |
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JOIN taxonverbatim USING (taxonlabel_id) |
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WHERE reference_id = |
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(SELECT reference_id FROM reference WHERE shortname = :datasource) |
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| 48 | 30 |
; |
| 49 | 31 |
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| 50 | 32 |
SELECT '# binomials' AS ___; |
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SELECT count(DISTINCT plantname.plantname_id) AS count |
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FROM specimenreplicate |
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JOIN taxondetermination USING (taxonoccurrence_id) |
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JOIN plantconcept USING (plantconcept_id) |
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JOIN plantname_ancestor USING (plantname_id) |
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JOIN plantname |
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ON plantname.plantname_id = plantname_ancestor.ancestor_id |
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AND plantname.rank = 'binomial' |
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WHERE datasource_id = |
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(SELECT party_id FROM party WHERE organizationname = :datasource) |
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AND taxondetermination.isoriginal |
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SELECT count(DISTINCT taxonverbatim_id) AS count |
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FROM taxonlabel |
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JOIN taxonverbatim USING (taxonlabel_id) |
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WHERE reference_id = |
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(SELECT reference_id FROM reference WHERE shortname = :datasource) |
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| 62 | 38 |
; |
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| 64 | 40 |
SELECT 'collection codes' AS ___; |
| 65 | 41 |
SELECT DISTINCT collectioncode_dwc |
| 66 | 42 |
FROM specimenreplicate |
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WHERE datasource_id =
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(SELECT party_id FROM party WHERE organizationname = :datasource)
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WHERE reference_id =
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(SELECT reference_id FROM reference WHERE shortname = :datasource)
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; |
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SELECT '# catalog numbers' AS ___; |
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SELECT count(DISTINCT catalognumber_dwc) AS count |
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FROM specimenreplicate |
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WHERE datasource_id =
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(SELECT party_id FROM party WHERE organizationname = :datasource)
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WHERE reference_id =
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(SELECT reference_id FROM reference WHERE shortname = :datasource)
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; |
| 77 | 53 |
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SELECT 'duplicate catalog numbers' AS ___; |
| 79 | 55 |
SELECT catalognumber_dwc, count(*) AS count |
| 80 | 56 |
FROM specimenreplicate |
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WHERE datasource_id =
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(SELECT party_id FROM party WHERE organizationname = :datasource)
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WHERE reference_id =
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(SELECT reference_id FROM reference WHERE shortname = :datasource)
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GROUP BY catalognumber_dwc |
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HAVING count(*) > 1 |
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ORDER BY catalognumber_dwc NULLS FIRST/* to match MySQL */
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ORDER BY catalognumber_dwc |
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; |
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SELECT '# counties' AS ___; |
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SELECT count(DISTINCT namedplace.namedplace_id) AS count |
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FROM specimenreplicate |
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JOIN taxonoccurrence USING (taxonoccurrence_id) |
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JOIN locationevent USING (locationevent_id) |
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JOIN locationdetermination USING (location_id) |
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JOIN namedplace_ancestor USING (namedplace_id) |
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JOIN namedplace |
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ON namedplace.namedplace_id = namedplace_ancestor.ancestor_id |
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AND namedplace.rank = 'county' |
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WHERE specimenreplicate.datasource_id = |
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(SELECT party_id FROM party WHERE organizationname = :datasource) |
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SELECT count(DISTINCT county) AS count |
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FROM place |
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WHERE reference_id = |
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(SELECT reference_id FROM reference WHERE shortname = :datasource) |
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| 100 | 69 |
; |
Also available in: Unified diff
mappings/verify.specimens.sql: Updated for current schema