Revision 6154
Added by Aaron Marcuse-Kubitza over 11 years ago
| VegBIEN.csv | ||
|---|---|---|
| 83 | 83 |
tag1,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2/_alt/2","The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
| 84 | 84 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
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| 85 | 85 |
PlotObsID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 86 |
det_by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
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| 86 | 87 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[reference_id/reference/shortname=TNRS]/taxonomicname/_join_words/1/_taxon_family_require_std/family", |
| 87 | 88 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[reference_id/reference/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2", |
| 88 | 89 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[reference_id/reference/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
| ... | ... | |
| 139 | 140 |
IsMorpho,,** No join mapping for *IsMorpho ** |
| 140 | 141 |
OrigAuth,,** No join mapping for *OrigAuth ** |
| 141 | 142 |
OrigRecordID,,** No join mapping for *OrigRecordID ** |
| 142 |
PlotID_index,,** No join mapping for *PlotID_index **
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| 143 |
PlotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
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| 143 | 144 |
SpAuthStatus,,** No join mapping for *SpAuthStatus ** |
| 144 | 145 |
coll_inits,,** No join mapping for *coll_inits ** |
| 145 | 146 |
collector_code,,** No join mapping for *collector_code ** Brad: OMIT |
| 146 | 147 |
common_name,,** No join mapping for *common_name ** |
| 147 |
det_by,,** No join mapping for *det_by ** |
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| 148 | 148 |
dist,,** No join mapping for *dist ** |
| 149 |
fam_status,,** No join mapping for *fam_status ** Brad: OMIT. This will be determined later by using TNRS.
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| 150 |
gen_status,,** No join mapping for *gen_status ** Brad: OMIT. This will be determined later by using TNRS.
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| 149 |
fam_status,,** No non-empty join mapping for OMIT ** Brad: OMIT. This will be determined later by using TNRS.
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| 150 |
gen_status,,** No non-empty join mapping for OMIT ** Brad: OMIT. This will be determined later by using TNRS.
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| 151 | 151 |
height_class,,** No join mapping for *height_class ** |
| 152 | 152 |
height_m_commercial,,** No join mapping for *height_m_commercial ** |
| 153 | 153 |
ind_id,,** No join mapping for *ind_id ** Brad: OMIT |
| 154 | 154 |
infra_auth_1,,** No join mapping for *infra_auth_1 ** |
| 155 | 155 |
morphocf,,** No join mapping for *morphocf ** |
| 156 |
morphoname,,** No join mapping for *morphoname **
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| 157 |
name_status,,"** No join mapping for *name_status ** Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
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| 156 |
morphoname,,"** No join mapping for *morphoname ** Not the morphospecies, which is stored in Species"
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| 157 |
name_status,,"** No non-empty join mapping for OMIT ** Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
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| 158 | 158 |
other_annotations,,** No join mapping for *other_annotations ** |
| 159 | 159 |
perp_dist,,** No join mapping for *perp_dist ** |
| 160 | 160 |
phenology,,** No join mapping for *phenology ** |
Also available in: Unified diff
inputs/SALVIAS/: Mapped unmapped fields with a VegCore/VegBIEN equivalent. plotMetadata_/: Remapped life_zone to communityID because it is now alt-ed together with vegetation*, and thus not just a description with life_zone_code as its globally unique name.