Revision 6217
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/QMOR/Specimen/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min, |
| 11 | 11 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 12 | 12 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 13 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
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|
| 14 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
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|
| 15 |
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
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|
| 16 |
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
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| 13 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 14 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 15 |
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 16 |
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 17 | 17 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 18 | 18 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 19 | 19 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| ... | ... | |
| 33 | 33 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 34 | 34 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
| 35 | 35 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2", |
| 36 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
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|
| 36 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value, |
|
| 37 | 37 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 38 | 38 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank", |
| 39 | 39 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| ... | ... | |
| 62 | 62 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 63 | 63 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 64 | 64 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 65 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
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|
| 65 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 66 | 66 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 67 | 67 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 68 | 68 |
locality,/location/locationnarrative/_merge/1, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 48 | 48 |
subplot,"//location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond", |
| 49 | 49 |
locationID,"//location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 50 | 50 |
fieldNumber,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/authorlocationcode", |
| 51 |
endDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date",
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| 52 |
eventDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date",
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| 53 |
startDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date",
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| 54 |
eventDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date",
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| 51 |
endDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate", |
|
| 52 |
eventDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate", |
|
| 53 |
startDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate", |
|
| 54 |
eventDate,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate", |
|
| 55 | 55 |
eventID,"//location/locationevent/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 56 | 56 |
communityID,//*/commname, |
| 57 | 57 |
communityName,//commconcept/commdescription, |
| 58 |
endDate,//locationevent/obsenddate/_*/date,
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| 59 |
eventDate,//locationevent/obsenddate/_*/date,
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| 60 |
startDate,//locationevent/obsstartdate/_*/date,
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| 61 |
eventDate,//locationevent/obsstartdate/_*/date,
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| 58 |
endDate,//locationevent/obsenddate, |
|
| 59 |
eventDate,//locationevent/obsenddate, |
|
| 60 |
startDate,//locationevent/obsstartdate, |
|
| 61 |
eventDate,//locationevent/obsstartdate, |
|
| 62 | 62 |
precipitation,//locationevent/precipitation_m, |
| 63 | 63 |
acidity_percent,//soilobs/acidity_fraction/_percent_to_fraction/value, |
| 64 | 64 |
baseSaturation_percent,//soilobs/basesaturation_fraction/_percent_to_fraction/value, |
| ... | ... | |
| 77 | 77 |
silt_percent,//soilobs/silt_fraction/_percent_to_fraction/value, |
| 78 | 78 |
sodium_percent,//soilobs/sodium_fraction/_percent_to_fraction/value, |
| 79 | 79 |
texture,//soilobs/texture, |
| 80 |
dateCollected,//aggregateoccurrence/collectiondate/_*/date,
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|
| 80 |
dateCollected,//aggregateoccurrence/collectiondate, |
|
| 81 | 81 |
dayCollected,//aggregateoccurrence/collectiondate, |
| 82 | 82 |
monthCollected,//aggregateoccurrence/collectiondate, |
| 83 | 83 |
yearCollected,//aggregateoccurrence/collectiondate, |
| ... | ... | |
| 156 | 156 |
parentScientificNameID,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/sourceaccessioncode, |
| 157 | 157 |
parentTaxonConceptID,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/sourceaccessioncode, |
| 158 | 158 |
parentTaxonID,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/sourceaccessioncode, |
| 159 |
dateIdentified,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_*/date,
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|
| 159 |
dateIdentified,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creationdate, |
|
| 160 | 160 |
dayIdentified,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creationdate, |
| 161 | 161 |
monthIdentified,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creationdate, |
| 162 | 162 |
yearIdentified,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creationdate, |
| ... | ... | |
| 250 | 250 |
taxonName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonname, |
| 251 | 251 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonomicname, |
| 252 | 252 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/verbatimrank, |
| 253 |
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date,
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|
| 253 |
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
|
| 254 | 254 |
dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
| 255 | 255 |
monthIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
| 256 | 256 |
yearIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
| inputs/SALVIAS-CSV/Plot/test.xml.ref | ||
|---|---|---|
| 31 | 31 |
</commconcept_id> |
| 32 | 32 |
</commdetermination> |
| 33 | 33 |
</commclass> |
| 34 |
<obsenddate><_date><date>$date_finish</date></_date></obsenddate>
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| 35 |
<obsstartdate><_date><date>$date_start</date></_date></obsstartdate>
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| 34 |
<obsenddate>$date_finish</obsenddate>
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| 35 |
<obsstartdate>$date_start</obsstartdate>
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| 36 | 36 |
<precipitation_m>$precip_mm</precipitation_m> |
| 37 | 37 |
<soilobs> |
| 38 | 38 |
<acidity_fraction> |
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 32 | 32 |
<aggregateoccurrence> |
| 33 | 33 |
<collectiondate> |
| 34 | 34 |
<_alt> |
| 35 |
<1><_date><date>$VerbatimCollectingDate</date></_date></1>
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|
| 35 |
<1>$VerbatimCollectingDate</1>
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|
| 36 | 36 |
<2> |
| 37 | 37 |
<_date> |
| 38 | 38 |
<day> |
| inputs/NCU-NCSC/Specimen/test.xml.ref | ||
|---|---|---|
| 25 | 25 |
<locationevent> |
| 26 | 26 |
<taxonoccurrence> |
| 27 | 27 |
<aggregateoccurrence> |
| 28 |
<collectiondate><_date><date>$Collect Date</date></_date></collectiondate>
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|
| 28 |
<collectiondate>$Collect Date</collectiondate>
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|
| 29 | 29 |
<plantobservation> |
| 30 | 30 |
<specimenreplicate> |
| 31 | 31 |
<catalognumber_dwc>$Barcode</catalognumber_dwc> |
| inputs/VegBank/observation_/test.xml.ref | ||
|---|---|---|
| 10 | 10 |
<project_id><project><sourceaccessioncode>$project_id</sourceaccessioncode></project></project_id> |
| 11 | 11 |
<authoreventcode>$authorobscode</authoreventcode> |
| 12 | 12 |
<sourceaccessioncode>$observation_id</sourceaccessioncode> |
| 13 |
<obsenddate><_date><date>$obsenddate</date></_date></obsenddate>
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|
| 14 |
<obsstartdate><_date><date>$obsstartdate</date></_date></obsstartdate>
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|
| 13 |
<obsenddate>$obsenddate</obsenddate>
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|
| 14 |
<obsstartdate>$obsstartdate</obsstartdate>
|
|
| 15 | 15 |
<soilobs> |
| 16 | 16 |
<basesaturation_fraction><_percent_to_fraction><value>$basesaturation</value></_percent_to_fraction></basesaturation_fraction> |
| 17 | 17 |
<cationexchangecapacity_cmol_kg>$exchangecapacity</cationexchangecapacity_cmol_kg> |
| ... | ... | |
| 27 | 27 |
</path> |
| 28 | 28 |
</_simplifyPath> |
| 29 | 29 |
</VegBIEN> |
| 30 |
Inserted 9 new rows into database |
|
| 30 |
Inserted 10 new rows into database |
|
| inputs/VegBank/taxonobservation_/test.xml.ref | ||
|---|---|---|
| 9 | 9 |
<sourceaccessioncode>$observation_id</sourceaccessioncode> |
| 10 | 10 |
<taxonoccurrence> |
| 11 | 11 |
<aggregateoccurrence> |
| 12 |
<collectiondate><_date><date>$collectiondate</date></_date></collectiondate>
|
|
| 12 |
<collectiondate>$collectiondate</collectiondate>
|
|
| 13 | 13 |
<notes>$notes</notes> |
| 14 | 14 |
<plantobservation><specimenreplicate><catalognumber_dwc>$museumaccessionnumber</catalognumber_dwc></specimenreplicate></plantobservation> |
| 15 | 15 |
</aggregateoccurrence> |
| ... | ... | |
| 59 | 59 |
</taxonomicname> |
| 60 | 60 |
</taxonlabel> |
| 61 | 61 |
</matched_label_id> |
| 62 |
<creationdate><_date><date><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></date></_date></creationdate>
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|
| 62 |
<creationdate><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></creationdate>
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|
| 63 | 63 |
<parent_id> |
| 64 | 64 |
<taxonlabel> |
| 65 | 65 |
<parent_id> |
| ... | ... | |
| 159 | 159 |
<specific_epithet>$Species</specific_epithet> |
| 160 | 160 |
</taxonverbatim> |
| 161 | 161 |
</taxonverbatim_id> |
| 162 |
<determinationdate><_date><date><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></date></_date></determinationdate>
|
|
| 162 |
<determinationdate><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></determinationdate>
|
|
| 163 | 163 |
<taxonfit>$taxonfit</taxonfit> |
| 164 | 164 |
</taxondetermination> |
| 165 | 165 |
<taxondetermination> |
| ... | ... | |
| 187 | 187 |
</path> |
| 188 | 188 |
</_simplifyPath> |
| 189 | 189 |
</VegBIEN> |
| 190 |
Inserted 25 new rows into database |
|
| 190 |
Inserted 24 new rows into database |
|
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 48 | 48 |
subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 49 | 49 |
locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 50 | 50 |
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authorlocationcode", |
| 51 |
endDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/1",
|
|
| 52 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
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|
| 53 |
startDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/1",
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|
| 54 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
|
|
| 51 |
endDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1", |
|
| 52 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 53 |
startDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
|
| 54 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 55 | 55 |
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 56 | 56 |
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
| 57 | 57 |
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
| 58 |
endDate,/location/locationevent/obsenddate/_*/date/_alt/1,
|
|
| 59 |
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
| 60 |
startDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
| 61 |
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
| 58 |
endDate,/location/locationevent/obsenddate/_alt/1, |
|
| 59 |
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 60 |
startDate,/location/locationevent/obsstartdate/_alt/1, |
|
| 61 |
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 62 | 62 |
precipitation,/location/locationevent/precipitation_m, |
| 63 | 63 |
acidity_percent,/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value, |
| 64 | 64 |
baseSaturation_percent,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value, |
| ... | ... | |
| 77 | 77 |
silt_percent,/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value, |
| 78 | 78 |
sodium_percent,/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value, |
| 79 | 79 |
texture,/location/locationevent/soilobs/texture, |
| 80 |
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
|
|
| 80 |
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
|
| 81 | 81 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 82 | 82 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 83 | 83 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 156 | 156 |
parentScientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| 157 | 157 |
parentTaxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| 158 | 158 |
parentTaxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| 159 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 159 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value, |
|
| 160 | 160 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 161 | 161 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 162 | 162 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 250 | 250 |
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 251 | 251 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 252 | 252 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 253 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 253 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 254 | 254 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 255 | 255 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 256 | 256 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/2", |
| 11 | 11 |
1ha Plot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 12 | 12 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 13 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
|
|
| 14 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
|
|
| 15 |
Observation Date,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
| 16 |
Observation Date,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
| 13 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 14 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 15 |
Observation Date,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 16 |
Observation Date,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 17 | 17 |
Id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 18 | 18 |
Diameter at 1.3m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
| 19 | 19 |
Tree Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 20 | 20 |
</authorlocationcode> |
| 21 | 21 |
</location> |
| 22 | 22 |
</location_id> |
| 23 |
<obsenddate><_date><date><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 24 |
<obsstartdate><_date><date><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 23 |
<obsenddate><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></obsenddate>
|
|
| 24 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate>
|
|
| 25 | 25 |
</locationevent> |
| 26 | 26 |
</parent_id> |
| 27 |
<obsenddate><_date><date><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 28 |
<obsstartdate><_date><date><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 27 |
<obsenddate><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></obsenddate>
|
|
| 28 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate>
|
|
| 29 | 29 |
<taxonoccurrence> |
| 30 | 30 |
<aggregateoccurrence> |
| 31 | 31 |
<plantobservation> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/2", |
| 11 | 11 |
1ha Plot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 12 | 12 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 13 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
|
|
| 14 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
|
|
| 15 |
Observation Date,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
| 16 |
Observation Date,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
| 13 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 14 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 15 |
Observation Date,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 16 |
Observation Date,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 17 | 17 |
Id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 18 | 18 |
Diameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
| 19 | 19 |
Tree Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 20 | 20 |
</authorlocationcode> |
| 21 | 21 |
</location> |
| 22 | 22 |
</location_id> |
| 23 |
<obsenddate><_date><date><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 24 |
<obsstartdate><_date><date><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 23 |
<obsenddate><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></obsenddate>
|
|
| 24 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate>
|
|
| 25 | 25 |
</locationevent> |
| 26 | 26 |
</parent_id> |
| 27 |
<obsenddate><_date><date><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 28 |
<obsstartdate><_date><date><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 27 |
<obsenddate><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></obsenddate>
|
|
| 28 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate>
|
|
| 29 | 29 |
<taxonoccurrence> |
| 30 | 30 |
<aggregateoccurrence> |
| 31 | 31 |
<plantobservation> |
| inputs/TEAM/TEAM_Sites/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
Site Name,/location/locationevent/*_id/project/projectname, |
| 5 | 5 |
CollectionDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 6 | 6 |
Name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 7 |
CollectionDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
|
|
| 8 |
CollectionDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
|
|
| 9 |
CollectionDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
| 10 |
CollectionDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
| 7 |
CollectionDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 8 |
CollectionDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 9 |
CollectionDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 10 |
CollectionDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 11 | 11 |
Name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 12 | 12 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
| 13 | 13 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
| inputs/TEAM/TEAM_Sites/test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<authorlocationcode>$Name</authorlocationcode> |
| 8 | 8 |
<locationevent> |
| 9 | 9 |
<project_id><project><projectname>$Site Name</projectname></project></project_id> |
| 10 |
<obsenddate><_date><date><_dateRangeEnd><value>$CollectionDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 11 |
<obsstartdate><_date><date><_dateRangeStart><value>$CollectionDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 10 |
<obsenddate><_dateRangeEnd><value>$CollectionDate</value></_dateRangeEnd></obsenddate>
|
|
| 11 |
<obsstartdate><_dateRangeStart><value>$CollectionDate</value></_dateRangeStart></obsstartdate>
|
|
| 12 | 12 |
</locationevent> |
| 13 | 13 |
<locationplace> |
| 14 | 14 |
<place_id> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 7 | 7 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 8 | 8 |
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
| 9 | 9 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 10 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
|
|
| 11 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
|
|
| 12 |
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
| 13 |
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
| 10 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 11 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 12 |
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 13 |
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 14 | 14 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
| 15 | 15 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 16 | 16 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| ... | ... | |
| 30 | 30 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 31 | 31 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
| 32 | 32 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2", |
| 33 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 33 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value, |
|
| 34 | 34 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 35 | 35 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank", |
| 36 | 36 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| ... | ... | |
| 59 | 59 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 60 | 60 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 61 | 61 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 62 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 62 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 63 | 63 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 64 | 64 |
locality,/location/locationnarrative/_merge/1, |
| 65 | 65 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 29 | 29 |
</_units> |
| 30 | 30 |
</elevation_m> |
| 31 | 31 |
<locationevent> |
| 32 |
<obsenddate><_date><date><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 33 |
<obsstartdate><_date><date><_dateRangeStart><value>$eventDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 32 |
<obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate>
|
|
| 33 |
<obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate>
|
|
| 34 | 34 |
<taxonoccurrence> |
| 35 | 35 |
<aggregateoccurrence> |
| 36 | 36 |
<plantobservation> |
| ... | ... | |
| 93 | 93 |
</taxonomicname> |
| 94 | 94 |
</taxonlabel> |
| 95 | 95 |
</matched_label_id> |
| 96 |
<creationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></creationdate>
|
|
| 96 |
<creationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></creationdate>
|
|
| 97 | 97 |
<parent_id> |
| 98 | 98 |
<taxonlabel> |
| 99 | 99 |
<rank>$taxonRank</rank> |
| ... | ... | |
| 206 | 206 |
<verbatimrank>$taxonRank</verbatimrank> |
| 207 | 207 |
</taxonverbatim> |
| 208 | 208 |
</taxonverbatim_id> |
| 209 |
<determinationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></determinationdate>
|
|
| 209 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate>
|
|
| 210 | 210 |
</taxondetermination> |
| 211 | 211 |
</taxonoccurrence> |
| 212 | 212 |
</locationevent> |
| inputs/CTFS/PlotObservation/VegBIEN.csv | ||
|---|---|---|
| 11 | 11 |
StartDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 12 | 12 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 13 | 13 |
PlotCensusNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authorlocationcode", |
| 14 |
EndDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/1",
|
|
| 15 |
StartDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/1",
|
|
| 14 |
EndDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1", |
|
| 15 |
StartDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
|
| 16 | 16 |
CensusID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 17 |
EndDate,/location/locationevent/obsenddate/_*/date/_alt/1,
|
|
| 18 |
StartDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
| 17 |
EndDate,/location/locationevent/obsenddate/_alt/1, |
|
| 18 |
StartDate,/location/locationevent/obsstartdate/_alt/1, |
|
| 19 | 19 |
CensusID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 20 | 20 |
PlotCensusNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| inputs/CTFS/PlotObservation/test.xml.ref | ||
|---|---|---|
| 8 | 8 |
<locationevent> |
| 9 | 9 |
<authoreventcode>$PlotCensusNumber</authoreventcode> |
| 10 | 10 |
<sourceaccessioncode>$CensusID</sourceaccessioncode> |
| 11 |
<obsenddate><_date><date>$EndDate</date></_date></obsenddate>
|
|
| 12 |
<obsstartdate><_date><date>$StartDate</date></_date></obsstartdate>
|
|
| 11 |
<obsenddate>$EndDate</obsenddate>
|
|
| 12 |
<obsstartdate>$StartDate</obsstartdate>
|
|
| 13 | 13 |
</locationevent> |
| 14 | 14 |
</location> |
| 15 | 15 |
</path> |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 24 | 24 |
PlotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 25 | 25 |
Line,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 26 | 26 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 27 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 27 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 28 | 28 |
----- |
| 29 | 29 |
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count |
| 30 | 30 |
FROM ""SALVIAS"".organisms |
| ... | ... | |
| 32 | 32 |
GROUP BY ""PlotID"", ""Line"" |
| 33 | 33 |
HAVING count(DISTINCT census_date) > 1 |
| 34 | 34 |
-----" |
| 35 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 35 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 36 | 36 |
----- |
| 37 | 37 |
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count |
| 38 | 38 |
FROM ""SALVIAS"".organisms |
| ... | ... | |
| 40 | 40 |
GROUP BY ""PlotID"", ""Line"" |
| 41 | 41 |
HAVING count(DISTINCT census_date) > 1 |
| 42 | 42 |
-----" |
| 43 |
census_date,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 43 |
census_date,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 44 | 44 |
----- |
| 45 | 45 |
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count |
| 46 | 46 |
FROM ""SALVIAS"".organisms |
| ... | ... | |
| 48 | 48 |
GROUP BY ""PlotID"", ""Line"" |
| 49 | 49 |
HAVING count(DISTINCT census_date) > 1 |
| 50 | 50 |
-----" |
| 51 |
census_date,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 51 |
census_date,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 52 | 52 |
----- |
| 53 | 53 |
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count |
| 54 | 54 |
FROM ""SALVIAS"".organisms |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 30 | 30 |
</sourceaccessioncode> |
| 31 | 31 |
</location> |
| 32 | 32 |
</location_id> |
| 33 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 34 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 33 |
<obsenddate><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></obsenddate>
|
|
| 34 |
<obsstartdate><_dateRangeStart><value>$census_date</value></_dateRangeStart></obsstartdate>
|
|
| 35 | 35 |
</locationevent> |
| 36 | 36 |
</parent_id> |
| 37 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 38 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 37 |
<obsenddate><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></obsenddate>
|
|
| 38 |
<obsstartdate><_dateRangeStart><value>$census_date</value></_dateRangeStart></obsstartdate>
|
|
| 39 | 39 |
<taxonoccurrence> |
| 40 | 40 |
<aggregateoccurrence> |
| 41 | 41 |
<count>$NoInd</count> |
| inputs/SALVIAS/plotMetadata_/VegBIEN.csv | ||
|---|---|---|
| 16 | 16 |
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 17 | 17 |
SiteCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
| 18 | 18 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
| 19 |
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/1",
|
|
| 20 |
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/1",
|
|
| 19 |
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1", |
|
| 20 |
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
|
| 21 | 21 |
vegetation_2,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/1, |
| 22 | 22 |
vegetation_1,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/2,Second because less detailed than vegetation_2 |
| 23 | 23 |
life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/3, |
| 24 | 24 |
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/4, |
| 25 |
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
|
|
| 26 |
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
| 25 |
date_finish,/location/locationevent/obsenddate/_alt/1, |
|
| 26 |
date_start,/location/locationevent/obsstartdate/_alt/1, |
|
| 27 | 27 |
Precip,/location/locationevent/precipitation_m, |
| 28 | 28 |
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values |
| 29 | 29 |
soil_base,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
| inputs/SALVIAS/plotMetadata_/test.xml.ref | ||
|---|---|---|
| 47 | 47 |
</commconcept_id> |
| 48 | 48 |
</commdetermination> |
| 49 | 49 |
</commclass> |
| 50 |
<obsenddate><_date><date>$date_finish</date></_date></obsenddate>
|
|
| 51 |
<obsstartdate><_date><date>$date_start</date></_date></obsstartdate>
|
|
| 50 |
<obsenddate>$date_finish</obsenddate>
|
|
| 51 |
<obsstartdate>$date_start</obsstartdate>
|
|
| 52 | 52 |
<precipitation_m>$Precip</precipitation_m> |
| 53 | 53 |
<soilobs> |
| 54 | 54 |
<acidity_fraction> |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 5 | 5 |
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 6 | 6 |
MaximumElevationInMeter,/location/elevation_m/_alt/2/_avg/max, |
| 7 | 7 |
MinimumElevationInMeter,/location/elevation_m/_alt/2/_avg/min, |
| 8 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
|
|
| 8 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
|
| 9 | 9 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 10 | 10 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 11 | 11 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/name, |
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 20 | 20 |
<locationevent> |
| 21 | 21 |
<taxonoccurrence> |
| 22 | 22 |
<aggregateoccurrence> |
| 23 |
<collectiondate><_date><date>$LatestDateCollected</date></_date></collectiondate>
|
|
| 23 |
<collectiondate>$LatestDateCollected</collectiondate>
|
|
| 24 | 24 |
<plantobservation> |
| 25 | 25 |
<specimenreplicate> |
| 26 | 26 |
<catalognumber_dwc>$CatalogNO</catalognumber_dwc> |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 106 | 106 |
dwc_terms_scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2/_alt/1", |
| 107 | 107 |
conceptual_darwin_2003_1_0_ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2/_alt/2", |
| 108 | 108 |
dwc_dwcore_AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2/_alt/3", |
| 109 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 109 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value, |
|
| 110 | 110 |
conceptual_darwin_2003_1_0_DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 111 | 111 |
conceptual_darwin_2003_1_0_MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 112 | 112 |
conceptual_darwin_2003_1_0_YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 175 | 175 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 176 | 176 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 177 | 177 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 178 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 178 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 179 | 179 |
conceptual_darwin_2003_1_0_DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 180 | 180 |
conceptual_darwin_2003_1_0_MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 181 | 181 |
conceptual_darwin_2003_1_0_YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 259 | 259 |
</matched_label_id> |
| 260 | 260 |
<creationdate> |
| 261 | 261 |
<_alt> |
| 262 |
<1><_date><date><_dateRangeStart><value>$dwc_terms_dateIdentified</value></_dateRangeStart></date></_date></1>
|
|
| 262 |
<1><_dateRangeStart><value>$dwc_terms_dateIdentified</value></_dateRangeStart></1>
|
|
| 263 | 263 |
<2> |
| 264 | 264 |
<_date> |
| 265 | 265 |
<day> |
| ... | ... | |
| 505 | 505 |
</taxonverbatim_id> |
| 506 | 506 |
<determinationdate> |
| 507 | 507 |
<_alt> |
| 508 |
<1><_date><date><_dateRangeStart><value>$dwc_terms_dateIdentified</value></_dateRangeStart></date></_date></1>
|
|
| 508 |
<1><_dateRangeStart><value>$dwc_terms_dateIdentified</value></_dateRangeStart></1>
|
|
| 509 | 509 |
<2> |
| 510 | 510 |
<_date> |
| 511 | 511 |
<day> |
| inputs/Madidi/Plot/VegBIEN.csv | ||
|---|---|---|
| 62 | 62 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 63 | 63 |
Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 64 | 64 |
Inventory code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 65 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value",
|
|
| 66 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value",
|
|
| 65 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
| 66 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
| 67 | 67 |
Vegetation type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
| 68 | 68 |
Locality description,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,Often begins with the text in Vegetation type |
| 69 |
First evaluation,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
|
|
| 70 |
First evaluation,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
|
|
| 69 |
First evaluation,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
| 70 |
First evaluation,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
| 71 | 71 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
| 72 | 72 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
| 73 | 73 |
"Carbón Orgánico (WSP S-9,10–%–0.06)",/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
| inputs/Madidi/Plot/test.xml.ref | ||
|---|---|---|
| 42 | 42 |
</commconcept_id> |
| 43 | 43 |
</commdetermination> |
| 44 | 44 |
</commclass> |
| 45 |
<obsenddate><_date><date><_dateRangeEnd><value>$First evaluation</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 46 |
<obsstartdate><_date><date><_dateRangeStart><value>$First evaluation</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 45 |
<obsenddate><_dateRangeEnd><value>$First evaluation</value></_dateRangeEnd></obsenddate>
|
|
| 46 |
<obsstartdate><_dateRangeStart><value>$First evaluation</value></_dateRangeStart></obsstartdate>
|
|
| 47 | 47 |
<soilobs> |
| 48 | 48 |
<acidity_fraction><_percent_to_fraction><value>$Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05)</value></_percent_to_fraction></acidity_fraction> |
| 49 | 49 |
<calcium_fraction><_percent_to_fraction><value>$Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)</value></_percent_to_fraction></calcium_fraction> |
| inputs/CVS/Organism/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 5 | 5 |
obsStartDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 6 | 6 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authorlocationcode", |
| 7 |
obsStartDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/1",
|
|
| 8 |
obsStartDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
| 7 |
obsStartDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
|
| 8 |
obsStartDate,/location/locationevent/obsstartdate/_alt/1, |
|
| 9 | 9 |
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value, |
| 10 | 10 |
authorObsCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 11 | 11 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| inputs/CVS/Organism/test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<authorlocationcode>$authorObsCode</authorlocationcode> |
| 8 | 8 |
<locationevent> |
| 9 | 9 |
<authoreventcode>$authorObsCode</authoreventcode> |
| 10 |
<obsstartdate><_date><date>$obsStartDate</date></_date></obsstartdate>
|
|
| 10 |
<obsstartdate>$obsStartDate</obsstartdate>
|
|
| 11 | 11 |
<taxonoccurrence> |
| 12 | 12 |
<aggregateoccurrence><cover_fraction><_percent_to_fraction><value>$%cover</value></_percent_to_fraction></cover_fraction></aggregateoccurrence> |
| 13 | 13 |
<authortaxoncode>$currentTaxonName sec Weakley 2006</authortaxoncode> |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 24 | 24 |
plot_code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 25 | 25 |
subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 26 | 26 |
PLOT_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 27 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 27 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 28 | 28 |
----- |
| 29 | 29 |
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count |
| 30 | 30 |
FROM ""SALVIAS-CSV"".organisms |
| ... | ... | |
| 32 | 32 |
GROUP BY ""PLOT_ID"", subplot |
| 33 | 33 |
HAVING count(DISTINCT census_date) > 1 |
| 34 | 34 |
-----" |
| 35 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 35 |
census_date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value","This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 36 | 36 |
----- |
| 37 | 37 |
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count |
| 38 | 38 |
FROM ""SALVIAS-CSV"".organisms |
| ... | ... | |
| 40 | 40 |
GROUP BY ""PLOT_ID"", subplot |
| 41 | 41 |
HAVING count(DISTINCT census_date) > 1 |
| 42 | 42 |
-----" |
| 43 |
census_date,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 43 |
census_date,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 44 | 44 |
----- |
| 45 | 45 |
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count |
| 46 | 46 |
FROM ""SALVIAS-CSV"".organisms |
| ... | ... | |
| 48 | 48 |
GROUP BY ""PLOT_ID"", subplot |
| 49 | 49 |
HAVING count(DISTINCT census_date) > 1 |
| 50 | 50 |
-----" |
| 51 |
census_date,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 51 |
census_date,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 52 | 52 |
----- |
| 53 | 53 |
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count |
| 54 | 54 |
FROM ""SALVIAS-CSV"".organisms |
| inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
|---|---|---|
| 30 | 30 |
</sourceaccessioncode> |
| 31 | 31 |
</location> |
| 32 | 32 |
</location_id> |
| 33 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 34 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 33 |
<obsenddate><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></obsenddate>
|
|
| 34 |
<obsstartdate><_dateRangeStart><value>$census_date</value></_dateRangeStart></obsstartdate>
|
|
| 35 | 35 |
</locationevent> |
| 36 | 36 |
</parent_id> |
| 37 |
<obsenddate><_date><date><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 38 |
<obsstartdate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 37 |
<obsenddate><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></obsenddate>
|
|
| 38 |
<obsstartdate><_dateRangeStart><value>$census_date</value></_dateRangeStart></obsstartdate>
|
|
| 39 | 39 |
<taxonoccurrence> |
| 40 | 40 |
<aggregateoccurrence> |
| 41 | 41 |
<count>$no_of_individuals</count> |
| inputs/SALVIAS-CSV/Plot/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 15 | 15 |
plot_code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
| 16 | 16 |
PLOT_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
| 17 |
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/1",
|
|
| 18 |
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/1",
|
|
| 17 |
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1", |
|
| 18 |
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
|
| 19 | 19 |
holdridge_life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
| 20 | 20 |
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
| 21 |
date_finish,/location/locationevent/obsenddate/_*/date/_alt/1,
|
|
| 22 |
date_start,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
| 21 |
date_finish,/location/locationevent/obsenddate/_alt/1, |
|
| 22 |
date_start,/location/locationevent/obsstartdate/_alt/1, |
|
| 23 | 23 |
precip_mm,/location/locationevent/precipitation_m, |
| 24 | 24 |
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values |
| 25 | 25 |
soil_base,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 8 | 8 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric |
| 9 | 9 |
MaximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,"Contains some verbatim values, including ranges and units" |
| 10 | 10 |
MinimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,"Contains some verbatim values, including ranges and units" |
| 11 |
VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date/_alt/0,
|
|
| 11 |
VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/0, |
|
| 12 | 12 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 13 | 13 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 14 | 14 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/NCU-NCSC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
SeriesName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1", |
| 5 | 5 |
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 6 | 6 |
Elevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
| 7 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
|
|
| 7 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
|
| 8 | 8 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 9 | 9 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 10 | 10 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| inputs/VegBank/observation_/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
obsstartdate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 14 | 14 |
plot_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 15 | 15 |
authorobscode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authorlocationcode", |
| 16 |
obsenddate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_*/date/_alt/1",
|
|
| 17 |
obsstartdate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_*/date/_alt/1",
|
|
| 16 |
obsenddate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1", |
|
| 17 |
obsstartdate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
|
| 18 | 18 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 19 |
obsenddate,/location/locationevent/obsenddate/_*/date/_alt/1,
|
|
| 20 |
obsstartdate,/location/locationevent/obsstartdate/_*/date/_alt/1,
|
|
| 19 |
obsenddate,/location/locationevent/obsenddate/_alt/1, |
|
| 20 |
obsstartdate,/location/locationevent/obsstartdate/_alt/1, |
|
| 21 | 21 |
basesaturation,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,"""Percent base saturation"" (baseSaturation definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
| 22 | 22 |
exchangecapacity,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg, |
| 23 | 23 |
soilclay,/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value,"""Percent clay in the soil horizon"" (soilClay definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
| inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| 5 | 5 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 6 | 6 |
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 7 |
collectiondate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
|
|
| 7 |
collectiondate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
|
| 8 | 8 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 9 | 9 |
museumaccessionnumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 10 | 10 |
observation_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| ... | ... | |
| 18 | 18 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/4", |
| 19 | 19 |
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""var. ""]/2", |
| 20 | 20 |
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2", |
| 21 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 21 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value, |
|
| 22 | 22 |
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=forma]/taxonepithet", |
| 23 | 23 |
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=variety]/taxonepithet", |
| 24 | 24 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
| ... | ... | |
| 39 | 39 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 40 | 40 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 41 | 41 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 42 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
|
|
| 42 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 43 | 43 |
taxonfit,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 44 | 44 |
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1, |
| 45 | 45 |
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1, |
| inputs/QMOR/Specimen/test.xml.ref | ||
|---|---|---|
| 40 | 40 |
</elevation_m> |
| 41 | 41 |
<locationevent> |
| 42 | 42 |
<method_id><method><name>$samplingProtocol</name></method></method_id> |
| 43 |
<obsenddate><_date><date><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></date></_date></obsenddate>
|
|
| 44 |
<obsstartdate><_date><date><_dateRangeStart><value>$eventDate</value></_dateRangeStart></date></_date></obsstartdate>
|
|
| 43 |
<obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate>
|
|
| 44 |
<obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate>
|
|
| 45 | 45 |
<taxonoccurrence> |
| 46 | 46 |
<aggregateoccurrence> |
| 47 | 47 |
<count>$individualCount</count> |
| ... | ... | |
| 113 | 113 |
</taxonomicname> |
| 114 | 114 |
</taxonlabel> |
| 115 | 115 |
</matched_label_id> |
| 116 |
<creationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></creationdate>
|
|
| 116 |
<creationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></creationdate>
|
|
| 117 | 117 |
<parent_id> |
| 118 | 118 |
<taxonlabel> |
| 119 | 119 |
<rank>$taxonRank</rank> |
| ... | ... | |
| 226 | 226 |
<verbatimrank>$taxonRank</verbatimrank> |
| 227 | 227 |
</taxonverbatim> |
| 228 | 228 |
</taxonverbatim_id> |
| 229 |
<determinationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></determinationdate>
|
|
| 229 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate>
|
|
| 230 | 230 |
<taxonfit>$identificationQualifier</taxonfit> |
| 231 | 231 |
</taxondetermination> |
| 232 | 232 |
</taxonoccurrence> |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Removed _date/date, because _date using a string date argument is no longer supported under plpython3u (dateutil is missing). Note that PostgreSQL's own date parsing is sufficient for most dates, so this use of _date is not strictly necessary and removing it will improve import times.