| 1 |
4651
|
aaronmk
|
QMOR,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
|
| 2 |
4336
|
aaronmk
|
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
|
| 3 |
4949
|
aaronmk
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
|
| 4 |
|
|
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
|
| 5 |
|
|
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
|
| 6 |
|
|
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
|
| 7 |
|
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
|
| 8 |
4818
|
aaronmk
|
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
|
| 9 |
4820
|
aaronmk
|
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,
|
| 10 |
4822
|
aaronmk
|
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,
|
| 11 |
3996
|
aaronmk
|
samplingProtocol,/location/locationevent/*_id/method/name,
|
| 12 |
5977
|
aaronmk
|
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
|
| 13 |
6217
|
aaronmk
|
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value",
|
| 14 |
|
|
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value",
|
| 15 |
|
|
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,
|
| 16 |
|
|
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,
|
| 17 |
3982
|
aaronmk
|
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
|
| 18 |
3969
|
aaronmk
|
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
|
| 19 |
4057
|
aaronmk
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
| 20 |
4327
|
aaronmk
|
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
| 21 |
|
|
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
|
| 22 |
6179
|
aaronmk
|
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/name,
|
| 23 |
3970
|
aaronmk
|
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
| 24 |
5176
|
aaronmk
|
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
| 25 |
6171
|
aaronmk
|
recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
| 26 |
4834
|
aaronmk
|
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
|
| 27 |
5600
|
aaronmk
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
|
| 28 |
6179
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/1/_taxon_family_require_std/family",
|
| 29 |
|
|
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1",
|
| 30 |
|
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
| 31 |
|
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
| 32 |
|
|
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
| 33 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 34 |
|
|
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
| 35 |
|
|
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2",
|
| 36 |
6217
|
aaronmk
|
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value,
|
| 37 |
5657
|
aaronmk
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
| 38 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank",
|
| 39 |
|
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
| 40 |
6179
|
aaronmk
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
| 41 |
5657
|
aaronmk
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
| 42 |
6179
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
| 43 |
5657
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
| 44 |
|
|
order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
| 45 |
|
|
class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
| 46 |
|
|
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
| 47 |
|
|
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
| 48 |
|
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
| 49 |
|
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank,
|
| 50 |
5733
|
aaronmk
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
|
| 51 |
5790
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/1/_taxon_family_require_std/family,
|
| 52 |
5788
|
aaronmk
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1,
|
| 53 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
| 54 |
|
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
| 55 |
|
|
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
| 56 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 57 |
|
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
| 58 |
|
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/2,
|
| 59 |
5657
|
aaronmk
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
| 60 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
| 61 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
| 62 |
5783
|
aaronmk
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
| 63 |
5948
|
aaronmk
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
|
| 64 |
5657
|
aaronmk
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
|
| 65 |
6217
|
aaronmk
|
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
|
| 66 |
4205
|
aaronmk
|
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
|
| 67 |
4079
|
aaronmk
|
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
| 68 |
3969
|
aaronmk
|
locality,/location/locationnarrative/_merge/1,
|
| 69 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
| 70 |
5861
|
aaronmk
|
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_deg/_noCV/value/_alt/1,
|
| 71 |
|
|
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
|
| 72 |
|
|
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
| 73 |
|
|
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
| 74 |
|
|
verbatimLatitude,/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude,
|
| 75 |
|
|
verbatimLongitude,/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude,
|
| 76 |
5855
|
aaronmk
|
continent,/location/locationplace/*_id/place/continent,
|
| 77 |
|
|
country,/location/locationplace/*_id/place/country,
|
| 78 |
|
|
county,/location/locationplace/*_id/place/county,
|
| 79 |
6179
|
aaronmk
|
decimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 80 |
|
|
decimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 81 |
|
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
| 82 |
|
|
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
| 83 |
5855
|
aaronmk
|
stateProvince,/location/locationplace/*_id/place/stateprovince,
|
| 84 |
4818
|
aaronmk
|
verbatimElevation,/location/verbatimelevation,
|
| 85 |
4638
|
aaronmk
|
acceptedNameUsage,,** No join mapping for acceptedNameUsage **
|
| 86 |
|
|
basisOfRecord,,** No join mapping for basisOfRecord **
|
| 87 |
|
|
behavior,,** No join mapping for behavior **
|
| 88 |
|
|
bibliographicCitation,,** No join mapping for dcterms:bibliographicCitation **
|
| 89 |
|
|
datasetID,,** No join mapping for datasetID **
|
| 90 |
|
|
datasetName,,** No join mapping for datasetName **
|
| 91 |
|
|
eventRemarks,,** No join mapping for eventRemarks **
|
| 92 |
|
|
eventTime,,** No join mapping for eventTime **
|
| 93 |
|
|
geodeticDatum,,** No join mapping for geodeticDatum **
|
| 94 |
|
|
georeferenceProtocol,,** No join mapping for georeferenceProtocol **
|
| 95 |
|
|
georeferenceRemarks,,** No join mapping for georeferenceRemarks **
|
| 96 |
|
|
georeferenceSources,,** No join mapping for georeferenceSources **
|
| 97 |
|
|
georeferencedBy,,** No join mapping for georeferencedBy **
|
| 98 |
|
|
georeferencedDate,,** No join mapping for georeferencedDate **
|
| 99 |
|
|
identificationRemarks,,** No join mapping for identificationRemarks **
|
| 100 |
|
|
institutionID,,** No join mapping for institutionID **
|
| 101 |
|
|
language,,** No join mapping for dcterms:language **
|
| 102 |
|
|
lifeStage,,** No join mapping for lifeStage **
|
| 103 |
|
|
locationRemarks,,** No join mapping for locationRemarks **
|
| 104 |
|
|
modified,,** No join mapping for dcterms:modified **
|
| 105 |
|
|
municipality,,** No join mapping for municipality **
|
| 106 |
|
|
nomenclaturalCode,,** No join mapping for nomenclaturalCode **
|
| 107 |
|
|
occurrenceRemarks,,** No join mapping for occurrenceRemarks **
|
| 108 |
|
|
ownerInstitutionCode,,** No join mapping for ownerInstitutionCode **
|
| 109 |
|
|
preparations,,** No join mapping for preparations **
|
| 110 |
|
|
rights,,** No join mapping for dcterms:rights **
|
| 111 |
|
|
rightsHolder,,** No join mapping for dcterms:rightsHolder **
|
| 112 |
|
|
type,,** No join mapping for dcterms:type **
|
| 113 |
|
|
typeStatus,,** No join mapping for typeStatus **
|
| 114 |
|
|
verbatimCoordinateSystem,,** No join mapping for verbatimCoordinateSystem **
|
| 115 |
|
|
verbatimCoordinates,,** No join mapping for verbatimCoordinates **
|
| 116 |
|
|
verbatimEventDate,,** No join mapping for verbatimEventDate **
|
| 117 |
|
|
verbatimSRS,,** No join mapping for verbatimSRS **
|
| 118 |
|
|
waterBody,,** No join mapping for waterBody **
|
