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Revision 6375

Added by Aaron Marcuse-Kubitza over 11 years ago

mappings/VegCore-VegBIEN.csv: institutionCode: Remap to source.shortname when specimen information is not provided, as is the case for geoscrub.herbaria on nimoy

View differences:

VegBIEN.csv
8 8 
GROUP BY acronym, accession_number
9 9 
HAVING count(*) > 1
10 10 
-----"
11 
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
11 
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
12 

  		




  
  13
  
    
[1] Using the following query:


  		




  
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-----


  		




  
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SELECT acronym, accession_number, count(*)


  		




  
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FROM ""REMIB"".""Specimen""


  		




  
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GROUP BY acronym, accession_number


  		




  
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HAVING count(*) > 1


  		




  
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-----"


  		




  
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acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",


  		




  12
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accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]


  		




  13
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  14
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[1] Using the following query:


  		




  ......




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GROUP BY acronym, accession_number


  		




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HAVING count(*) > 1


  		




  32
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-----"


  		




  33
  
  
    
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/name,


  		




  
  42
  
    
accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/name/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]


  		




  
  43
  
    

  		




  
  44
  
    
[1] Using the following query:


  		




  
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-----


  		




  
  46
  
    
SELECT acronym, accession_number, count(*)


  		




  
  47
  
    
FROM ""REMIB"".""Specimen""


  		




  
  48
  
    
GROUP BY acronym, accession_number


  		




  
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HAVING count(*) > 1


  		




  
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-----"


  		




  
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acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/name/_if[@name=""if specimen""]/then",


  		




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collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,


  		




  35
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family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/1/_taxon_family_require_std/family/_nullIf/value",


  		




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genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2",


  		




  ......




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  85
  
    
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,


  		




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  86
  
    
state,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,


  		




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state,/location/locationplace/*_id/place/stateprovince,


  		




  
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accession_number,"/source/shortname/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]


  		




  
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[1] Using the following query:


  		




  
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-----


  		




  
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SELECT acronym, accession_number, count(*)


  		




  
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FROM ""REMIB"".""Specimen""


  		




  
  94
  
    
GROUP BY acronym, accession_number


  		




  
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HAVING count(*) > 1


  		




  
  96
  
    
-----"


  		




  
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acronym,"/source/shortname/_if[@name=""if specimen""]/else",


  		




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lat_min,,** No join mapping for *lat_min ** 


  		




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lat_sec,,** No join mapping for *lat_sec ** 


  		




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long_min,,** No join mapping for *long_min ** 


  		












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