Revision 6403
Added by Aaron Marcuse-Kubitza over 11 years ago
test.xml.ref | ||
---|---|---|
1 | 1 |
Put template: |
2 | 2 |
<VegBIEN> |
3 |
<_simplifyPath id="-1"> |
|
4 |
<next>parent_id</next> |
|
3 |
<_setDefault id="-1"> |
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4 |
<col>source_id</col> |
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5 |
<value><source><shortname>ARIZ</shortname></source></value> |
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5 | 6 |
<path> |
6 |
<location> |
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7 |
<authorlocationcode> |
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8 |
<_alt> |
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9 |
<1>$GlobalUniqueIdentifier</1> |
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10 |
<2> |
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<_join> |
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<1>$InstitutionCode</1> |
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13 |
<2>$CollectionCode</2> |
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<3> |
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<_alt> |
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<1>$CatalogNumberNumeric</1> |
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<2>$CatalogNumber</2> |
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</_alt> |
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</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation_m> |
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<_avg> |
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<max>$MaximumElevationInMeters</max> |
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<min>$MinimumElevationInMeters</min> |
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</_avg> |
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</elevation_m> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_alt> |
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<1>$VerbatimCollectingDate</1> |
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<2> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</2> |
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</_alt> |
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</collectiondate> |
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<count>$IndividualCount</count> |
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<notes>$FieldNotes</notes> |
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<plantobservation> |
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<collectionnumber>$CollectorNumber</collectionnumber> |
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67 |
<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$Sex</definedvalue> |
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</definedvalue> |
|
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<specimenreplicate> |
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<catalognumber_dwc> |
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7 |
<_simplifyPath> |
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8 |
<next>parent_id</next> |
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9 |
<path> |
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10 |
<location> |
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<authorlocationcode> |
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<_alt> |
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<1>$GlobalUniqueIdentifier</1> |
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<2> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3> |
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<_alt> |
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<1>$CatalogNumberNumeric</1> |
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<2>$CatalogNumber</2> |
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</_alt> |
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</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation_m> |
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<_avg> |
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<max>$MaximumElevationInMeters</max> |
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<min>$MinimumElevationInMeters</min> |
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</_avg> |
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</elevation_m> |
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34 |
<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
|
78 | 38 |
<_alt> |
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<1>$CatalogNumberNumeric</1> |
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<2>$CatalogNumber</2> |
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</_alt> |
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</catalognumber_dwc> |
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<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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<institution_id> |
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85 |
<sourcename> |
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<matched_source_id><source><shortname>$InstitutionCode</shortname></source></matched_source_id> |
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<name>$InstitutionCode</name> |
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</sourcename> |
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</institution_id> |
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<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$Collector</fullname></party></collector_id> |
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<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
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96 |
<taxondetermination> |
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97 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
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98 |
<taxonverbatim_id> |
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<taxonverbatim> |
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<taxonlabel_id> |
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<taxonlabel> |
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<matched_label_id> |
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103 |
<taxonlabel> |
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<source_id><source><shortname>TNRS</shortname></source></source_id> |
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<taxonomicname> |
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106 |
<_join_words> |
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107 |
<1> |
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108 |
<_taxon_family_require_std> |
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109 |
<family> |
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110 |
<_nullIf> |
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<null>$ScientificName</null> |
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112 |
<value>$Family</value> |
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</_nullIf> |
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</family> |
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</_taxon_family_require_std> |
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</1> |
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<2> |
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<_alt> |
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<1>$ScientificNameAuthor</1> |
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120 |
<2> |
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<_alt> |
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122 |
<1>$ScientificName</1> |
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<2> |
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<_join_words> |
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<2>$Genus</2> |
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<3>$Species</3> |
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<4>$Subspecies</4> |
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</_join_words> |
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129 |
</2> |
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</_alt> |
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</2> |
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132 |
</_alt> |
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</2> |
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</_join_words> |
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</taxonomicname> |
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</taxonlabel> |
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</matched_label_id> |
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138 |
<creationdate> |
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<1>$VerbatimCollectingDate</1> |
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40 |
<2> |
|
139 | 41 |
<_date> |
140 | 42 |
<day> |
141 | 43 |
<_nullIf> |
142 | 44 |
<null>0</null> |
143 | 45 |
<type>float</type> |
144 |
<value>$DayIdentified</value>
|
|
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<value>$DayCollected</value>
|
|
145 | 47 |
</_nullIf> |
146 | 48 |
</day> |
147 | 49 |
<month> |
148 | 50 |
<_nullIf> |
149 | 51 |
<null>0</null> |
150 | 52 |
<type>float</type> |
151 |
<value>$MonthIdentified</value>
|
|
53 |
<value>$MonthCollected</value>
|
|
152 | 54 |
</_nullIf> |
153 | 55 |
</month> |
154 | 56 |
<year> |
155 | 57 |
<_nullIf> |
156 | 58 |
<null>0</null> |
157 | 59 |
<type>float</type> |
158 |
<value>$YearIdentified</value>
|
|
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<value>$YearCollected</value>
|
|
159 | 61 |
</_nullIf> |
160 | 62 |
</year> |
161 | 63 |
</_date> |
162 |
</creationdate> |
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<parent_id> |
|
64 |
</2> |
|
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</_alt> |
|
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</collectiondate> |
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<count>$IndividualCount</count> |
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68 |
<notes>$FieldNotes</notes> |
|
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<plantobservation> |
|
70 |
<collectionnumber>$CollectorNumber</collectionnumber> |
|
71 |
<definedvalue fkey="tablerecord_id"> |
|
72 |
<userdefined_id> |
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73 |
<userdefined> |
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<tablename>plantobservation</tablename> |
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75 |
<userdefinedname>sex</userdefinedname> |
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76 |
</userdefined> |
|
77 |
</userdefined_id> |
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78 |
<definedvalue>$Sex</definedvalue> |
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79 |
</definedvalue> |
|
80 |
<specimenreplicate> |
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81 |
<catalognumber_dwc> |
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82 |
<_alt> |
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83 |
<1>$CatalogNumberNumeric</1> |
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84 |
<2>$CatalogNumber</2> |
|
85 |
</_alt> |
|
86 |
</catalognumber_dwc> |
|
87 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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88 |
<institution_id> |
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89 |
<sourcename> |
|
90 |
<matched_source_id><source><shortname>$InstitutionCode</shortname></source></matched_source_id> |
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91 |
<name>$InstitutionCode</name> |
|
92 |
</sourcename> |
|
93 |
</institution_id> |
|
94 |
<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
|
95 |
</specimenreplicate> |
|
96 |
</plantobservation> |
|
97 |
</aggregateoccurrence> |
|
98 |
<collector_id><party><fullname>$Collector</fullname></party></collector_id> |
|
99 |
<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
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100 |
<taxondetermination> |
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<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
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102 |
<taxonverbatim_id> |
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103 |
<taxonverbatim> |
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104 |
<taxonlabel_id> |
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164 | 105 |
<taxonlabel> |
106 |
<matched_label_id> |
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107 |
<taxonlabel> |
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108 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
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109 |
<taxonomicname> |
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110 |
<_join_words> |
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111 |
<1> |
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112 |
<_taxon_family_require_std> |
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113 |
<family> |
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114 |
<_nullIf> |
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115 |
<null>$ScientificName</null> |
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116 |
<value>$Family</value> |
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117 |
</_nullIf> |
|
118 |
</family> |
|
119 |
</_taxon_family_require_std> |
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120 |
</1> |
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121 |
<2> |
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122 |
<_alt> |
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123 |
<1>$ScientificNameAuthor</1> |
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124 |
<2> |
|
125 |
<_alt> |
|
126 |
<1>$ScientificName</1> |
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127 |
<2> |
|
128 |
<_join_words> |
|
129 |
<2>$Genus</2> |
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130 |
<3>$Species</3> |
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131 |
<4>$Subspecies</4> |
|
132 |
</_join_words> |
|
133 |
</2> |
|
134 |
</_alt> |
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135 |
</2> |
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136 |
</_alt> |
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137 |
</2> |
|
138 |
</_join_words> |
|
139 |
</taxonomicname> |
|
140 |
</taxonlabel> |
|
141 |
</matched_label_id> |
|
142 |
<creationdate> |
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143 |
<_date> |
|
144 |
<day> |
|
145 |
<_nullIf> |
|
146 |
<null>0</null> |
|
147 |
<type>float</type> |
|
148 |
<value>$DayIdentified</value> |
|
149 |
</_nullIf> |
|
150 |
</day> |
|
151 |
<month> |
|
152 |
<_nullIf> |
|
153 |
<null>0</null> |
|
154 |
<type>float</type> |
|
155 |
<value>$MonthIdentified</value> |
|
156 |
</_nullIf> |
|
157 |
</month> |
|
158 |
<year> |
|
159 |
<_nullIf> |
|
160 |
<null>0</null> |
|
161 |
<type>float</type> |
|
162 |
<value>$YearIdentified</value> |
|
163 |
</_nullIf> |
|
164 |
</year> |
|
165 |
</_date> |
|
166 |
</creationdate> |
|
165 | 167 |
<parent_id> |
166 | 168 |
<taxonlabel> |
167 |
<rank>cultivar</rank> |
|
168 | 169 |
<parent_id> |
169 | 170 |
<taxonlabel> |
170 |
<rank>forma</rank>
|
|
171 |
<rank>cultivar</rank>
|
|
171 | 172 |
<parent_id> |
172 | 173 |
<taxonlabel> |
173 |
<rank>variety</rank>
|
|
174 |
<rank>forma</rank>
|
|
174 | 175 |
<parent_id> |
175 | 176 |
<taxonlabel> |
176 |
<rank>subspecies</rank> |
|
177 |
<taxonepithet>$Subspecies</taxonepithet> |
|
177 |
<rank>variety</rank> |
|
178 | 178 |
<parent_id> |
179 | 179 |
<taxonlabel> |
180 |
<rank>species</rank> |
|
181 |
<taxonepithet>$Species</taxonepithet> |
|
180 |
<rank>subspecies</rank>
|
|
181 |
<taxonepithet>$Subspecies</taxonepithet>
|
|
182 | 182 |
<parent_id> |
183 | 183 |
<taxonlabel> |
184 |
<rank>genus</rank>
|
|
185 |
<taxonepithet>$Genus</taxonepithet>
|
|
184 |
<rank>species</rank>
|
|
185 |
<taxonepithet>$Species</taxonepithet>
|
|
186 | 186 |
<parent_id> |
187 | 187 |
<taxonlabel> |
188 |
<rank>family</rank>
|
|
189 |
<taxonepithet>$Family</taxonepithet>
|
|
188 |
<rank>genus</rank>
|
|
189 |
<taxonepithet>$Genus</taxonepithet>
|
|
190 | 190 |
<parent_id> |
191 | 191 |
<taxonlabel> |
192 |
<rank>order</rank>
|
|
193 |
<taxonepithet>$Order</taxonepithet>
|
|
192 |
<rank>family</rank>
|
|
193 |
<taxonepithet>$Family</taxonepithet>
|
|
194 | 194 |
<parent_id> |
195 | 195 |
<taxonlabel> |
196 |
<rank>class</rank>
|
|
197 |
<taxonepithet>$Class</taxonepithet>
|
|
196 |
<rank>order</rank>
|
|
197 |
<taxonepithet>$Order</taxonepithet>
|
|
198 | 198 |
<parent_id> |
199 | 199 |
<taxonlabel> |
200 |
<rank>phylum</rank>
|
|
201 |
<taxonepithet>$Phylum</taxonepithet>
|
|
200 |
<rank>class</rank>
|
|
201 |
<taxonepithet>$Class</taxonepithet>
|
|
202 | 202 |
<parent_id> |
203 | 203 |
<taxonlabel> |
204 |
<rank>kingdom</rank> |
|
205 |
<taxonepithet>$Kingdom</taxonepithet> |
|
204 |
<rank>phylum</rank> |
|
205 |
<taxonepithet>$Phylum</taxonepithet> |
|
206 |
<parent_id> |
|
207 |
<taxonlabel> |
|
208 |
<rank>kingdom</rank> |
|
209 |
<taxonepithet>$Kingdom</taxonepithet> |
|
210 |
</taxonlabel> |
|
211 |
</parent_id> |
|
206 | 212 |
</taxonlabel> |
207 | 213 |
</parent_id> |
208 | 214 |
</taxonlabel> |
... | ... | |
225 | 231 |
</parent_id> |
226 | 232 |
</taxonlabel> |
227 | 233 |
</parent_id> |
228 |
</taxonlabel> |
|
229 |
</parent_id> |
|
230 |
<taxonomicname> |
|
231 |
<_join_words> |
|
232 |
<1> |
|
233 |
<_taxon_family_require_std> |
|
234 |
<family> |
|
235 |
<_nullIf> |
|
236 |
<null>$ScientificName</null> |
|
237 |
<value>$Family</value> |
|
238 |
</_nullIf> |
|
239 |
</family> |
|
240 |
</_taxon_family_require_std> |
|
241 |
</1> |
|
242 |
<2> |
|
243 |
<_alt> |
|
244 |
<1>$ScientificNameAuthor</1> |
|
234 |
<taxonomicname> |
|
235 |
<_join_words> |
|
236 |
<1> |
|
237 |
<_taxon_family_require_std> |
|
238 |
<family> |
|
239 |
<_nullIf> |
|
240 |
<null>$ScientificName</null> |
|
241 |
<value>$Family</value> |
|
242 |
</_nullIf> |
|
243 |
</family> |
|
244 |
</_taxon_family_require_std> |
|
245 |
</1> |
|
245 | 246 |
<2> |
246 | 247 |
<_alt> |
247 |
<1>$ScientificName</1> |
|
248 |
<1>$ScientificNameAuthor</1>
|
|
248 | 249 |
<2> |
249 |
<_join_words> |
|
250 |
<2>$Genus</2> |
|
251 |
<3>$Species</3> |
|
252 |
<4>$Subspecies</4> |
|
253 |
</_join_words> |
|
250 |
<_alt> |
|
251 |
<1>$ScientificName</1> |
|
252 |
<2> |
|
253 |
<_join_words> |
|
254 |
<2>$Genus</2> |
|
255 |
<3>$Species</3> |
|
256 |
<4>$Subspecies</4> |
|
257 |
</_join_words> |
|
258 |
</2> |
|
259 |
</_alt> |
|
254 | 260 |
</2> |
255 | 261 |
</_alt> |
256 | 262 |
</2> |
257 |
</_alt> |
|
258 |
</2> |
|
259 |
</_join_words> |
|
260 |
</taxonomicname> |
|
261 |
</taxonlabel> |
|
262 |
</taxonlabel_id> |
|
263 |
<family>$Family</family> |
|
264 |
<genus>$Genus</genus> |
|
265 |
<specific_epithet>$Species</specific_epithet> |
|
266 |
<taxonname>$ScientificName</taxonname> |
|
267 |
<taxonomicname>$ScientificNameAuthor</taxonomicname> |
|
268 |
</taxonverbatim> |
|
269 |
</taxonverbatim_id> |
|
270 |
<determinationdate> |
|
271 |
<_date> |
|
272 |
<day> |
|
273 |
<_nullIf> |
|
274 |
<null>0</null> |
|
275 |
<type>float</type> |
|
276 |
<value>$DayIdentified</value> |
|
277 |
</_nullIf> |
|
278 |
</day> |
|
279 |
<month> |
|
280 |
<_nullIf> |
|
281 |
<null>0</null> |
|
282 |
<type>float</type> |
|
283 |
<value>$MonthIdentified</value> |
|
284 |
</_nullIf> |
|
285 |
</month> |
|
286 |
<year> |
|
287 |
<_nullIf> |
|
288 |
<null>0</null> |
|
289 |
<type>float</type> |
|
290 |
<value>$YearIdentified</value> |
|
291 |
</_nullIf> |
|
292 |
</year> |
|
293 |
</_date> |
|
294 |
</determinationdate> |
|
295 |
<notes>$Remarks</notes> |
|
296 |
<taxonfit>$IdentificationModifier</taxonfit> |
|
297 |
</taxondetermination> |
|
298 |
</taxonoccurrence> |
|
299 |
<waterdepth_m> |
|
300 |
<_avg> |
|
301 |
<max>$MaximumDepthInMeters</max> |
|
302 |
<min>$MinimumDepthInMeters</min> |
|
303 |
</_avg> |
|
304 |
</waterdepth_m> |
|
305 |
</locationevent> |
|
306 |
<locationnarrative>$Locality</locationnarrative> |
|
307 |
<locationplace> |
|
308 |
<place_id> |
|
309 |
<place> |
|
310 |
<coordinates_id> |
|
311 |
<coordinates> |
|
312 |
<coordsaccuracy_m><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m> |
|
313 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
314 |
<latitude_deg> |
|
315 |
<_nullIf> |
|
316 |
<null>0</null> |
|
317 |
<type>float</type> |
|
318 |
<value>$DecimalLatitude</value> |
|
319 |
</_nullIf> |
|
320 |
</latitude_deg> |
|
321 |
<longitude_deg> |
|
322 |
<_nullIf> |
|
323 |
<null>0</null> |
|
324 |
<type>float</type> |
|
325 |
<value>$DecimalLongitude</value> |
|
326 |
</_nullIf> |
|
327 |
</longitude_deg> |
|
328 |
</coordinates> |
|
329 |
</coordinates_id> |
|
330 |
<continent>$ContinentOcean</continent> |
|
331 |
<country>$Country</country> |
|
332 |
<county>$County</county> |
|
333 |
<matched_place_id> |
|
263 |
</_join_words> |
|
264 |
</taxonomicname> |
|
265 |
</taxonlabel> |
|
266 |
</taxonlabel_id> |
|
267 |
<family>$Family</family> |
|
268 |
<genus>$Genus</genus> |
|
269 |
<specific_epithet>$Species</specific_epithet> |
|
270 |
<taxonname>$ScientificName</taxonname> |
|
271 |
<taxonomicname>$ScientificNameAuthor</taxonomicname> |
|
272 |
</taxonverbatim> |
|
273 |
</taxonverbatim_id> |
|
274 |
<determinationdate> |
|
275 |
<_date> |
|
276 |
<day> |
|
277 |
<_nullIf> |
|
278 |
<null>0</null> |
|
279 |
<type>float</type> |
|
280 |
<value>$DayIdentified</value> |
|
281 |
</_nullIf> |
|
282 |
</day> |
|
283 |
<month> |
|
284 |
<_nullIf> |
|
285 |
<null>0</null> |
|
286 |
<type>float</type> |
|
287 |
<value>$MonthIdentified</value> |
|
288 |
</_nullIf> |
|
289 |
</month> |
|
290 |
<year> |
|
291 |
<_nullIf> |
|
292 |
<null>0</null> |
|
293 |
<type>float</type> |
|
294 |
<value>$YearIdentified</value> |
|
295 |
</_nullIf> |
|
296 |
</year> |
|
297 |
</_date> |
|
298 |
</determinationdate> |
|
299 |
<notes>$Remarks</notes> |
|
300 |
<taxonfit>$IdentificationModifier</taxonfit> |
|
301 |
</taxondetermination> |
|
302 |
</taxonoccurrence> |
|
303 |
<waterdepth_m> |
|
304 |
<_avg> |
|
305 |
<max>$MaximumDepthInMeters</max> |
|
306 |
<min>$MinimumDepthInMeters</min> |
|
307 |
</_avg> |
|
308 |
</waterdepth_m> |
|
309 |
</locationevent> |
|
310 |
<locationnarrative>$Locality</locationnarrative> |
|
311 |
<locationplace> |
|
312 |
<place_id> |
|
334 | 313 |
<place> |
335 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
336 | 314 |
<coordinates_id> |
337 | 315 |
<coordinates> |
338 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
316 |
<coordsaccuracy_m><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m> |
|
317 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
339 | 318 |
<latitude_deg> |
340 | 319 |
<_nullIf> |
341 | 320 |
<null>0</null> |
... | ... | |
352 | 331 |
</longitude_deg> |
353 | 332 |
</coordinates> |
354 | 333 |
</coordinates_id> |
334 |
<continent>$ContinentOcean</continent> |
|
355 | 335 |
<country>$Country</country> |
356 | 336 |
<county>$County</county> |
337 |
<matched_place_id> |
|
338 |
<place> |
|
339 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
340 |
<coordinates_id> |
|
341 |
<coordinates> |
|
342 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
343 |
<latitude_deg> |
|
344 |
<_nullIf> |
|
345 |
<null>0</null> |
|
346 |
<type>float</type> |
|
347 |
<value>$DecimalLatitude</value> |
|
348 |
</_nullIf> |
|
349 |
</latitude_deg> |
|
350 |
<longitude_deg> |
|
351 |
<_nullIf> |
|
352 |
<null>0</null> |
|
353 |
<type>float</type> |
|
354 |
<value>$DecimalLongitude</value> |
|
355 |
</_nullIf> |
|
356 |
</longitude_deg> |
|
357 |
</coordinates> |
|
358 |
</coordinates_id> |
|
359 |
<country>$Country</country> |
|
360 |
<county>$County</county> |
|
361 |
<stateprovince>$StateProvince</stateprovince> |
|
362 |
</place> |
|
363 |
</matched_place_id> |
|
357 | 364 |
<stateprovince>$StateProvince</stateprovince> |
358 | 365 |
</place> |
359 |
</matched_place_id> |
|
360 |
<stateprovince>$StateProvince</stateprovince> |
|
361 |
</place> |
|
362 |
</place_id> |
|
363 |
</locationplace> |
|
364 |
</location> |
|
366 |
</place_id> |
|
367 |
</locationplace> |
|
368 |
</location> |
|
369 |
</path> |
|
370 |
</_simplifyPath> |
|
365 | 371 |
</path> |
366 |
</_simplifyPath>
|
|
372 |
</_setDefault>
|
|
367 | 373 |
</VegBIEN> |
368 | 374 |
Inserted 45 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()