Revision 6403
Added by Aaron Marcuse-Kubitza over 11 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<col>source_id</col> |
|
| 5 |
<value><source><shortname>GBIF</shortname></source></value> |
|
| 5 | 6 |
<path> |
| 6 |
<location> |
|
| 7 |
<authorlocationcode> |
|
| 8 |
<_join> |
|
| 9 |
<1>$InstitutionCD</1> |
|
| 10 |
<2>$CollectionCD</2> |
|
| 11 |
<3>$CatalogNO</3> |
|
| 12 |
</_join> |
|
| 13 |
</authorlocationcode> |
|
| 14 |
<elevation_m> |
|
| 15 |
<_avg> |
|
| 16 |
<max>$MaximumElevationInMeter</max> |
|
| 17 |
<min>$MinimumElevationInMeter</min> |
|
| 18 |
</_avg> |
|
| 19 |
</elevation_m> |
|
| 20 |
<locationevent> |
|
| 21 |
<taxonoccurrence> |
|
| 22 |
<aggregateoccurrence> |
|
| 23 |
<collectiondate>$LatestDateCollected</collectiondate> |
|
| 24 |
<plantobservation> |
|
| 25 |
<specimenreplicate> |
|
| 26 |
<catalognumber_dwc>$CatalogNO</catalognumber_dwc> |
|
| 27 |
<collectioncode_dwc>$CollectionCD</collectioncode_dwc> |
|
| 28 |
<institution_id> |
|
| 29 |
<sourcename> |
|
| 30 |
<matched_source_id><source><shortname>$InstitutionCD</shortname></source></matched_source_id> |
|
| 31 |
<name>$InstitutionCD</name> |
|
| 32 |
</sourcename> |
|
| 33 |
</institution_id> |
|
| 34 |
</specimenreplicate> |
|
| 35 |
</plantobservation> |
|
| 36 |
</aggregateoccurrence> |
|
| 37 |
<collector_id><party><fullname>$Collector</fullname></party></collector_id> |
|
| 38 |
<taxondetermination> |
|
| 39 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
|
| 40 |
<taxonverbatim_id> |
|
| 41 |
<taxonverbatim> |
|
| 42 |
<taxonlabel_id> |
|
| 43 |
<taxonlabel> |
|
| 44 |
<matched_label_id> |
|
| 7 |
<_simplifyPath> |
|
| 8 |
<next>parent_id</next> |
|
| 9 |
<path> |
|
| 10 |
<location> |
|
| 11 |
<authorlocationcode> |
|
| 12 |
<_join> |
|
| 13 |
<1>$InstitutionCD</1> |
|
| 14 |
<2>$CollectionCD</2> |
|
| 15 |
<3>$CatalogNO</3> |
|
| 16 |
</_join> |
|
| 17 |
</authorlocationcode> |
|
| 18 |
<elevation_m> |
|
| 19 |
<_avg> |
|
| 20 |
<max>$MaximumElevationInMeter</max> |
|
| 21 |
<min>$MinimumElevationInMeter</min> |
|
| 22 |
</_avg> |
|
| 23 |
</elevation_m> |
|
| 24 |
<locationevent> |
|
| 25 |
<taxonoccurrence> |
|
| 26 |
<aggregateoccurrence> |
|
| 27 |
<collectiondate>$LatestDateCollected</collectiondate> |
|
| 28 |
<plantobservation> |
|
| 29 |
<specimenreplicate> |
|
| 30 |
<catalognumber_dwc>$CatalogNO</catalognumber_dwc> |
|
| 31 |
<collectioncode_dwc>$CollectionCD</collectioncode_dwc> |
|
| 32 |
<institution_id> |
|
| 33 |
<sourcename> |
|
| 34 |
<matched_source_id><source><shortname>$InstitutionCD</shortname></source></matched_source_id> |
|
| 35 |
<name>$InstitutionCD</name> |
|
| 36 |
</sourcename> |
|
| 37 |
</institution_id> |
|
| 38 |
</specimenreplicate> |
|
| 39 |
</plantobservation> |
|
| 40 |
</aggregateoccurrence> |
|
| 41 |
<collector_id><party><fullname>$Collector</fullname></party></collector_id> |
|
| 42 |
<taxondetermination> |
|
| 43 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
|
| 44 |
<taxonverbatim_id> |
|
| 45 |
<taxonverbatim> |
|
| 46 |
<taxonlabel_id> |
|
| 45 | 47 |
<taxonlabel> |
| 46 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 48 |
<matched_label_id> |
|
| 49 |
<taxonlabel> |
|
| 50 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 51 |
<taxonomicname> |
|
| 52 |
<_join_words> |
|
| 53 |
<1> |
|
| 54 |
<_taxon_family_require_std> |
|
| 55 |
<family> |
|
| 56 |
<_nullIf> |
|
| 57 |
<null>$ScientificName</null> |
|
| 58 |
<value>$Family</value> |
|
| 59 |
</_nullIf> |
|
| 60 |
</family> |
|
| 61 |
</_taxon_family_require_std> |
|
| 62 |
</1> |
|
| 63 |
<2> |
|
| 64 |
<_join_words> |
|
| 65 |
<1> |
|
| 66 |
<_alt> |
|
| 67 |
<1>$ScientificName</1> |
|
| 68 |
<2> |
|
| 69 |
<_join_words> |
|
| 70 |
<2>$Genus</2> |
|
| 71 |
<3>$SpecificEpithet</3> |
|
| 72 |
<5>$InfraspecificEpithet</5> |
|
| 73 |
</_join_words> |
|
| 74 |
</2> |
|
| 75 |
</_alt> |
|
| 76 |
</1> |
|
| 77 |
<2>$AuthorOfScientificName</2> |
|
| 78 |
</_join_words> |
|
| 79 |
</2> |
|
| 80 |
</_join_words> |
|
| 81 |
</taxonomicname> |
|
| 82 |
</taxonlabel> |
|
| 83 |
</matched_label_id> |
|
| 84 |
<parent_id> |
|
| 85 |
<taxonlabel> |
|
| 86 |
<parent_id> |
|
| 87 |
<taxonlabel> |
|
| 88 |
<rank>cultivar</rank> |
|
| 89 |
<parent_id> |
|
| 90 |
<taxonlabel> |
|
| 91 |
<rank>forma</rank> |
|
| 92 |
<parent_id> |
|
| 93 |
<taxonlabel> |
|
| 94 |
<rank>variety</rank> |
|
| 95 |
<parent_id> |
|
| 96 |
<taxonlabel> |
|
| 97 |
<rank>subspecies</rank> |
|
| 98 |
<parent_id> |
|
| 99 |
<taxonlabel> |
|
| 100 |
<rank>species</rank> |
|
| 101 |
<taxonepithet>$SpecificEpithet</taxonepithet> |
|
| 102 |
<parent_id> |
|
| 103 |
<taxonlabel> |
|
| 104 |
<rank>genus</rank> |
|
| 105 |
<taxonepithet>$Genus</taxonepithet> |
|
| 106 |
<parent_id> |
|
| 107 |
<taxonlabel> |
|
| 108 |
<rank>family</rank> |
|
| 109 |
<taxonepithet>$Family</taxonepithet> |
|
| 110 |
</taxonlabel> |
|
| 111 |
</parent_id> |
|
| 112 |
</taxonlabel> |
|
| 113 |
</parent_id> |
|
| 114 |
</taxonlabel> |
|
| 115 |
</parent_id> |
|
| 116 |
</taxonlabel> |
|
| 117 |
</parent_id> |
|
| 118 |
</taxonlabel> |
|
| 119 |
</parent_id> |
|
| 120 |
</taxonlabel> |
|
| 121 |
</parent_id> |
|
| 122 |
</taxonlabel> |
|
| 123 |
</parent_id> |
|
| 124 |
<taxonepithet>$InfraspecificEpithet</taxonepithet> |
|
| 125 |
</taxonlabel> |
|
| 126 |
</parent_id> |
|
| 47 | 127 |
<taxonomicname> |
| 48 | 128 |
<_join_words> |
| 49 | 129 |
<1> |
| ... | ... | |
| 76 | 156 |
</_join_words> |
| 77 | 157 |
</taxonomicname> |
| 78 | 158 |
</taxonlabel> |
| 79 |
</matched_label_id> |
|
| 80 |
<parent_id> |
|
| 159 |
</taxonlabel_id> |
|
| 160 |
<author>$AuthorOfScientificName</author> |
|
| 161 |
<family>$Family</family> |
|
| 162 |
<genus>$Genus</genus> |
|
| 163 |
<specific_epithet>$SpecificEpithet</specific_epithet> |
|
| 164 |
<taxonname>$ScientificName</taxonname> |
|
| 165 |
</taxonverbatim> |
|
| 166 |
</taxonverbatim_id> |
|
| 167 |
</taxondetermination> |
|
| 168 |
<taxondetermination> |
|
| 169 |
<isoriginal>true</isoriginal> |
|
| 170 |
<taxonverbatim_id> |
|
| 171 |
<taxonverbatim> |
|
| 172 |
<taxonlabel_id> |
|
| 81 | 173 |
<taxonlabel> |
| 174 |
<matched_label_id> |
|
| 175 |
<taxonlabel> |
|
| 176 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 177 |
<taxonomicname> |
|
| 178 |
<_join_words> |
|
| 179 |
<1> |
|
| 180 |
<_taxon_family_require_std> |
|
| 181 |
<family> |
|
| 182 |
<_nullIf> |
|
| 183 |
<null>$ScientificNameOriginal</null> |
|
| 184 |
<value>$GBIFFamilyOriginal</value> |
|
| 185 |
</_nullIf> |
|
| 186 |
</family> |
|
| 187 |
</_taxon_family_require_std> |
|
| 188 |
</1> |
|
| 189 |
<2> |
|
| 190 |
<_alt> |
|
| 191 |
<1>$ScientificNameOriginal</1> |
|
| 192 |
<2>$GBIFGenusOriginal</2> |
|
| 193 |
</_alt> |
|
| 194 |
</2> |
|
| 195 |
</_join_words> |
|
| 196 |
</taxonomicname> |
|
| 197 |
</taxonlabel> |
|
| 198 |
</matched_label_id> |
|
| 82 | 199 |
<parent_id> |
| 83 | 200 |
<taxonlabel> |
| 84 |
<rank>cultivar</rank> |
|
| 85 | 201 |
<parent_id> |
| 86 | 202 |
<taxonlabel> |
| 87 |
<rank>forma</rank>
|
|
| 203 |
<rank>cultivar</rank>
|
|
| 88 | 204 |
<parent_id> |
| 89 | 205 |
<taxonlabel> |
| 90 |
<rank>variety</rank>
|
|
| 206 |
<rank>forma</rank>
|
|
| 91 | 207 |
<parent_id> |
| 92 | 208 |
<taxonlabel> |
| 93 |
<rank>subspecies</rank>
|
|
| 209 |
<rank>variety</rank>
|
|
| 94 | 210 |
<parent_id> |
| 95 | 211 |
<taxonlabel> |
| 96 |
<rank>species</rank> |
|
| 97 |
<taxonepithet>$SpecificEpithet</taxonepithet> |
|
| 212 |
<rank>subspecies</rank> |
|
| 98 | 213 |
<parent_id> |
| 99 | 214 |
<taxonlabel> |
| 100 |
<rank>genus</rank> |
|
| 101 |
<taxonepithet>$Genus</taxonepithet> |
|
| 215 |
<rank>species</rank> |
|
| 102 | 216 |
<parent_id> |
| 103 | 217 |
<taxonlabel> |
| 104 |
<rank>family</rank> |
|
| 105 |
<taxonepithet>$Family</taxonepithet> |
|
| 218 |
<rank>genus</rank> |
|
| 219 |
<taxonepithet>$GBIFGenusOriginal</taxonepithet> |
|
| 220 |
<parent_id> |
|
| 221 |
<taxonlabel> |
|
| 222 |
<rank>family</rank> |
|
| 223 |
<taxonepithet>$GBIFFamilyOriginal</taxonepithet> |
|
| 224 |
</taxonlabel> |
|
| 225 |
</parent_id> |
|
| 106 | 226 |
</taxonlabel> |
| 107 | 227 |
</parent_id> |
| 108 | 228 |
</taxonlabel> |
| ... | ... | |
| 117 | 237 |
</parent_id> |
| 118 | 238 |
</taxonlabel> |
| 119 | 239 |
</parent_id> |
| 120 |
<taxonepithet>$InfraspecificEpithet</taxonepithet> |
|
| 121 |
</taxonlabel> |
|
| 122 |
</parent_id> |
|
| 123 |
<taxonomicname> |
|
| 124 |
<_join_words> |
|
| 125 |
<1> |
|
| 126 |
<_taxon_family_require_std> |
|
| 127 |
<family> |
|
| 128 |
<_nullIf> |
|
| 129 |
<null>$ScientificName</null> |
|
| 130 |
<value>$Family</value> |
|
| 131 |
</_nullIf> |
|
| 132 |
</family> |
|
| 133 |
</_taxon_family_require_std> |
|
| 134 |
</1> |
|
| 135 |
<2> |
|
| 136 |
<_join_words> |
|
| 137 |
<1> |
|
| 138 |
<_alt> |
|
| 139 |
<1>$ScientificName</1> |
|
| 140 |
<2> |
|
| 141 |
<_join_words> |
|
| 142 |
<2>$Genus</2> |
|
| 143 |
<3>$SpecificEpithet</3> |
|
| 144 |
<5>$InfraspecificEpithet</5> |
|
| 145 |
</_join_words> |
|
| 146 |
</2> |
|
| 147 |
</_alt> |
|
| 148 |
</1> |
|
| 149 |
<2>$AuthorOfScientificName</2> |
|
| 150 |
</_join_words> |
|
| 151 |
</2> |
|
| 152 |
</_join_words> |
|
| 153 |
</taxonomicname> |
|
| 154 |
</taxonlabel> |
|
| 155 |
</taxonlabel_id> |
|
| 156 |
<author>$AuthorOfScientificName</author> |
|
| 157 |
<family>$Family</family> |
|
| 158 |
<genus>$Genus</genus> |
|
| 159 |
<specific_epithet>$SpecificEpithet</specific_epithet> |
|
| 160 |
<taxonname>$ScientificName</taxonname> |
|
| 161 |
</taxonverbatim> |
|
| 162 |
</taxonverbatim_id> |
|
| 163 |
</taxondetermination> |
|
| 164 |
<taxondetermination> |
|
| 165 |
<isoriginal>true</isoriginal> |
|
| 166 |
<taxonverbatim_id> |
|
| 167 |
<taxonverbatim> |
|
| 168 |
<taxonlabel_id> |
|
| 169 |
<taxonlabel> |
|
| 170 |
<matched_label_id> |
|
| 171 |
<taxonlabel> |
|
| 172 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 173 | 240 |
<taxonomicname> |
| 174 | 241 |
<_join_words> |
| 175 | 242 |
<1> |
| ... | ... | |
| 191 | 258 |
</_join_words> |
| 192 | 259 |
</taxonomicname> |
| 193 | 260 |
</taxonlabel> |
| 194 |
</matched_label_id> |
|
| 195 |
<parent_id> |
|
| 196 |
<taxonlabel> |
|
| 197 |
<parent_id> |
|
| 198 |
<taxonlabel> |
|
| 199 |
<rank>cultivar</rank> |
|
| 200 |
<parent_id> |
|
| 201 |
<taxonlabel> |
|
| 202 |
<rank>forma</rank> |
|
| 203 |
<parent_id> |
|
| 204 |
<taxonlabel> |
|
| 205 |
<rank>variety</rank> |
|
| 206 |
<parent_id> |
|
| 207 |
<taxonlabel> |
|
| 208 |
<rank>subspecies</rank> |
|
| 209 |
<parent_id> |
|
| 210 |
<taxonlabel> |
|
| 211 |
<rank>species</rank> |
|
| 212 |
<parent_id> |
|
| 213 |
<taxonlabel> |
|
| 214 |
<rank>genus</rank> |
|
| 215 |
<taxonepithet>$GBIFGenusOriginal</taxonepithet> |
|
| 216 |
<parent_id> |
|
| 217 |
<taxonlabel> |
|
| 218 |
<rank>family</rank> |
|
| 219 |
<taxonepithet>$GBIFFamilyOriginal</taxonepithet> |
|
| 220 |
</taxonlabel> |
|
| 221 |
</parent_id> |
|
| 222 |
</taxonlabel> |
|
| 223 |
</parent_id> |
|
| 224 |
</taxonlabel> |
|
| 225 |
</parent_id> |
|
| 226 |
</taxonlabel> |
|
| 227 |
</parent_id> |
|
| 228 |
</taxonlabel> |
|
| 229 |
</parent_id> |
|
| 230 |
</taxonlabel> |
|
| 231 |
</parent_id> |
|
| 232 |
</taxonlabel> |
|
| 233 |
</parent_id> |
|
| 234 |
</taxonlabel> |
|
| 235 |
</parent_id> |
|
| 236 |
<taxonomicname> |
|
| 237 |
<_join_words> |
|
| 238 |
<1> |
|
| 239 |
<_taxon_family_require_std> |
|
| 240 |
<family> |
|
| 241 |
<_nullIf> |
|
| 242 |
<null>$ScientificNameOriginal</null> |
|
| 243 |
<value>$GBIFFamilyOriginal</value> |
|
| 244 |
</_nullIf> |
|
| 245 |
</family> |
|
| 246 |
</_taxon_family_require_std> |
|
| 247 |
</1> |
|
| 248 |
<2> |
|
| 249 |
<_alt> |
|
| 250 |
<1>$ScientificNameOriginal</1> |
|
| 251 |
<2>$GBIFGenusOriginal</2> |
|
| 252 |
</_alt> |
|
| 253 |
</2> |
|
| 254 |
</_join_words> |
|
| 255 |
</taxonomicname> |
|
| 256 |
</taxonlabel> |
|
| 257 |
</taxonlabel_id> |
|
| 258 |
<family>$GBIFFamilyOriginal</family> |
|
| 259 |
<genus>$GBIFGenusOriginal</genus> |
|
| 260 |
<taxonname>$ScientificNameOriginal</taxonname> |
|
| 261 |
</taxonverbatim> |
|
| 262 |
</taxonverbatim_id> |
|
| 263 |
</taxondetermination> |
|
| 264 |
</taxonoccurrence> |
|
| 265 |
</locationevent> |
|
| 266 |
<locationnarrative>$Locality</locationnarrative> |
|
| 267 |
<locationplace> |
|
| 268 |
<place_id> |
|
| 269 |
<place> |
|
| 270 |
<coordinates_id> |
|
| 271 |
<coordinates> |
|
| 272 |
<latitude_deg> |
|
| 273 |
<_nullIf> |
|
| 274 |
<null>0</null> |
|
| 275 |
<type>float</type> |
|
| 276 |
<value>$VerbatimLatitude</value> |
|
| 277 |
</_nullIf> |
|
| 278 |
</latitude_deg> |
|
| 279 |
<longitude_deg> |
|
| 280 |
<_nullIf> |
|
| 281 |
<null>0</null> |
|
| 282 |
<type>float</type> |
|
| 283 |
<value>$VerbatimLongitude</value> |
|
| 284 |
</_nullIf> |
|
| 285 |
</longitude_deg> |
|
| 286 |
</coordinates> |
|
| 287 |
</coordinates_id> |
|
| 288 |
<country>$Country</country> |
|
| 289 |
<county>$County</county> |
|
| 290 |
<matched_place_id> |
|
| 261 |
</taxonlabel_id> |
|
| 262 |
<family>$GBIFFamilyOriginal</family> |
|
| 263 |
<genus>$GBIFGenusOriginal</genus> |
|
| 264 |
<taxonname>$ScientificNameOriginal</taxonname> |
|
| 265 |
</taxonverbatim> |
|
| 266 |
</taxonverbatim_id> |
|
| 267 |
</taxondetermination> |
|
| 268 |
</taxonoccurrence> |
|
| 269 |
</locationevent> |
|
| 270 |
<locationnarrative>$Locality</locationnarrative> |
|
| 271 |
<locationplace> |
|
| 272 |
<place_id> |
|
| 291 | 273 |
<place> |
| 292 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 293 | 274 |
<coordinates_id> |
| 294 | 275 |
<coordinates> |
| 295 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 296 | 276 |
<latitude_deg> |
| 297 | 277 |
<_nullIf> |
| 298 | 278 |
<null>0</null> |
| ... | ... | |
| 311 | 291 |
</coordinates_id> |
| 312 | 292 |
<country>$Country</country> |
| 313 | 293 |
<county>$County</county> |
| 294 |
<matched_place_id> |
|
| 295 |
<place> |
|
| 296 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 297 |
<coordinates_id> |
|
| 298 |
<coordinates> |
|
| 299 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 300 |
<latitude_deg> |
|
| 301 |
<_nullIf> |
|
| 302 |
<null>0</null> |
|
| 303 |
<type>float</type> |
|
| 304 |
<value>$VerbatimLatitude</value> |
|
| 305 |
</_nullIf> |
|
| 306 |
</latitude_deg> |
|
| 307 |
<longitude_deg> |
|
| 308 |
<_nullIf> |
|
| 309 |
<null>0</null> |
|
| 310 |
<type>float</type> |
|
| 311 |
<value>$VerbatimLongitude</value> |
|
| 312 |
</_nullIf> |
|
| 313 |
</longitude_deg> |
|
| 314 |
</coordinates> |
|
| 315 |
</coordinates_id> |
|
| 316 |
<country>$Country</country> |
|
| 317 |
<county>$County</county> |
|
| 318 |
<stateprovince>$StateProvince</stateprovince> |
|
| 319 |
</place> |
|
| 320 |
</matched_place_id> |
|
| 314 | 321 |
<stateprovince>$StateProvince</stateprovince> |
| 315 | 322 |
</place> |
| 316 |
</matched_place_id> |
|
| 317 |
<stateprovince>$StateProvince</stateprovince> |
|
| 318 |
</place> |
|
| 319 |
</place_id> |
|
| 320 |
</locationplace> |
|
| 321 |
</location> |
|
| 323 |
</place_id> |
|
| 324 |
</locationplace> |
|
| 325 |
</location> |
|
| 326 |
</path> |
|
| 327 |
</_simplifyPath> |
|
| 322 | 328 |
</path> |
| 323 |
</_simplifyPath>
|
|
| 329 |
</_setDefault>
|
|
| 324 | 330 |
</VegBIEN> |
| 325 | 331 |
Inserted 47 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()