Revision 6403
Added by Aaron Marcuse-Kubitza over 11 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<col>source_id</col> |
|
| 5 |
<value><source><shortname>JBM</shortname></source></value> |
|
| 5 | 6 |
<path> |
| 6 |
<location>
|
|
| 7 |
<authorlocationcode>
|
|
| 8 |
<_alt>
|
|
| 9 |
<1>$id</1>
|
|
| 10 |
<2>
|
|
| 11 |
<_join>
|
|
| 12 |
<1>$institutionCode</1>
|
|
| 7 |
<_simplifyPath>
|
|
| 8 |
<next>parent_id</next>
|
|
| 9 |
<path>
|
|
| 10 |
<location>
|
|
| 11 |
<authorlocationcode>
|
|
| 12 |
<_alt>
|
|
| 13 |
<1>$id</1>
|
|
| 13 | 14 |
<2> |
| 14 | 15 |
<_join> |
| 15 |
<1>$collectionCode</1> |
|
| 16 |
<2>$collectionID</2> |
|
| 16 |
<1>$institutionCode</1> |
|
| 17 |
<2> |
|
| 18 |
<_join> |
|
| 19 |
<1>$collectionCode</1> |
|
| 20 |
<2>$collectionID</2> |
|
| 21 |
</_join> |
|
| 22 |
</2> |
|
| 23 |
<3>$catalogNumber</3> |
|
| 17 | 24 |
</_join> |
| 18 | 25 |
</2> |
| 19 |
<3>$catalogNumber</3> |
|
| 20 |
</_join> |
|
| 21 |
</2> |
|
| 22 |
</_alt> |
|
| 23 |
</authorlocationcode> |
|
| 24 |
<elevation_m><_avg><min>$minimumElevationInMeters</min></_avg></elevation_m> |
|
| 25 |
<locationevent> |
|
| 26 |
<obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate> |
|
| 27 |
<obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate> |
|
| 28 |
<taxonoccurrence> |
|
| 29 |
<aggregateoccurrence> |
|
| 30 |
<plantobservation> |
|
| 31 |
<collectionnumber>$recordNumber</collectionnumber> |
|
| 32 |
<definedvalue fkey="tablerecord_id"> |
|
| 33 |
<userdefined_id> |
|
| 34 |
<userdefined> |
|
| 35 |
<tablename>plantobservation</tablename> |
|
| 36 |
<userdefinedname>sex</userdefinedname> |
|
| 37 |
</userdefined> |
|
| 38 |
</userdefined_id> |
|
| 39 |
<definedvalue>$sex</definedvalue> |
|
| 40 |
</definedvalue> |
|
| 41 |
<specimenreplicate> |
|
| 42 |
<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
|
| 43 |
<collectioncode_dwc> |
|
| 44 |
<_join> |
|
| 45 |
<1>$collectionCode</1> |
|
| 46 |
<2>$collectionID</2> |
|
| 47 |
</_join> |
|
| 48 |
</collectioncode_dwc> |
|
| 49 |
<institution_id> |
|
| 50 |
<sourcename> |
|
| 51 |
<matched_source_id><source><shortname>$institutionCode</shortname></source></matched_source_id> |
|
| 52 |
<name>$institutionCode</name> |
|
| 53 |
</sourcename> |
|
| 54 |
</institution_id> |
|
| 55 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 56 |
</specimenreplicate> |
|
| 57 |
</plantobservation> |
|
| 58 |
</aggregateoccurrence> |
|
| 59 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 60 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 61 |
<taxondetermination> |
|
| 62 |
<taxonverbatim_id> |
|
| 63 |
<taxonverbatim> |
|
| 64 |
<taxonlabel_id> |
|
| 65 |
<taxonlabel> |
|
| 66 |
<matched_label_id> |
|
| 26 |
</_alt> |
|
| 27 |
</authorlocationcode> |
|
| 28 |
<elevation_m><_avg><min>$minimumElevationInMeters</min></_avg></elevation_m> |
|
| 29 |
<locationevent> |
|
| 30 |
<obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate> |
|
| 31 |
<obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate> |
|
| 32 |
<taxonoccurrence> |
|
| 33 |
<aggregateoccurrence> |
|
| 34 |
<plantobservation> |
|
| 35 |
<collectionnumber>$recordNumber</collectionnumber> |
|
| 36 |
<definedvalue fkey="tablerecord_id"> |
|
| 37 |
<userdefined_id> |
|
| 38 |
<userdefined> |
|
| 39 |
<tablename>plantobservation</tablename> |
|
| 40 |
<userdefinedname>sex</userdefinedname> |
|
| 41 |
</userdefined> |
|
| 42 |
</userdefined_id> |
|
| 43 |
<definedvalue>$sex</definedvalue> |
|
| 44 |
</definedvalue> |
|
| 45 |
<specimenreplicate> |
|
| 46 |
<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
|
| 47 |
<collectioncode_dwc> |
|
| 48 |
<_join> |
|
| 49 |
<1>$collectionCode</1> |
|
| 50 |
<2>$collectionID</2> |
|
| 51 |
</_join> |
|
| 52 |
</collectioncode_dwc> |
|
| 53 |
<institution_id> |
|
| 54 |
<sourcename> |
|
| 55 |
<matched_source_id><source><shortname>$institutionCode</shortname></source></matched_source_id> |
|
| 56 |
<name>$institutionCode</name> |
|
| 57 |
</sourcename> |
|
| 58 |
</institution_id> |
|
| 59 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 60 |
</specimenreplicate> |
|
| 61 |
</plantobservation> |
|
| 62 |
</aggregateoccurrence> |
|
| 63 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 64 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 65 |
<taxondetermination> |
|
| 66 |
<taxonverbatim_id> |
|
| 67 |
<taxonverbatim> |
|
| 68 |
<taxonlabel_id> |
|
| 67 | 69 |
<taxonlabel> |
| 68 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 69 |
<taxonomicname> |
|
| 70 |
<_join_words> |
|
| 71 |
<1> |
|
| 72 |
<_taxon_family_require_std> |
|
| 73 |
<family> |
|
| 74 |
<_nullIf> |
|
| 75 |
<null>$scientificName</null> |
|
| 76 |
<value>$family</value> |
|
| 77 |
</_nullIf> |
|
| 78 |
</family> |
|
| 79 |
</_taxon_family_require_std> |
|
| 80 |
</1> |
|
| 81 |
<2> |
|
| 82 |
<_alt> |
|
| 83 |
<1>$scientificName</1> |
|
| 70 |
<matched_label_id> |
|
| 71 |
<taxonlabel> |
|
| 72 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 73 |
<taxonomicname> |
|
| 74 |
<_join_words> |
|
| 75 |
<1> |
|
| 76 |
<_taxon_family_require_std> |
|
| 77 |
<family> |
|
| 78 |
<_nullIf> |
|
| 79 |
<null>$scientificName</null> |
|
| 80 |
<value>$family</value> |
|
| 81 |
</_nullIf> |
|
| 82 |
</family> |
|
| 83 |
</_taxon_family_require_std> |
|
| 84 |
</1> |
|
| 84 | 85 |
<2> |
| 85 |
<_join_words> |
|
| 86 |
<2>$genus</2> |
|
| 87 |
<3>$specificEpithet</3> |
|
| 88 |
</_join_words> |
|
| 86 |
<_alt> |
|
| 87 |
<1>$scientificName</1> |
|
| 88 |
<2> |
|
| 89 |
<_join_words> |
|
| 90 |
<2>$genus</2> |
|
| 91 |
<3>$specificEpithet</3> |
|
| 92 |
</_join_words> |
|
| 93 |
</2> |
|
| 94 |
</_alt> |
|
| 89 | 95 |
</2> |
| 90 |
</_alt> |
|
| 91 |
</2> |
|
| 92 |
</_join_words> |
|
| 93 |
</taxonomicname> |
|
| 94 |
</taxonlabel> |
|
| 95 |
</matched_label_id> |
|
| 96 |
<parent_id> |
|
| 97 |
<taxonlabel> |
|
| 96 |
</_join_words> |
|
| 97 |
</taxonomicname> |
|
| 98 |
</taxonlabel> |
|
| 99 |
</matched_label_id> |
|
| 98 | 100 |
<parent_id> |
| 99 | 101 |
<taxonlabel> |
| 100 |
<rank>cultivar</rank> |
|
| 101 | 102 |
<parent_id> |
| 102 | 103 |
<taxonlabel> |
| 103 |
<rank>forma</rank>
|
|
| 104 |
<rank>cultivar</rank>
|
|
| 104 | 105 |
<parent_id> |
| 105 | 106 |
<taxonlabel> |
| 106 |
<rank>variety</rank>
|
|
| 107 |
<rank>forma</rank>
|
|
| 107 | 108 |
<parent_id> |
| 108 | 109 |
<taxonlabel> |
| 109 |
<rank>subspecies</rank>
|
|
| 110 |
<rank>variety</rank>
|
|
| 110 | 111 |
<parent_id> |
| 111 | 112 |
<taxonlabel> |
| 112 |
<rank>species</rank> |
|
| 113 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 113 |
<rank>subspecies</rank> |
|
| 114 | 114 |
<parent_id> |
| 115 | 115 |
<taxonlabel> |
| 116 |
<rank>genus</rank>
|
|
| 117 |
<taxonepithet>$genus</taxonepithet>
|
|
| 116 |
<rank>species</rank>
|
|
| 117 |
<taxonepithet>$specificEpithet</taxonepithet>
|
|
| 118 | 118 |
<parent_id> |
| 119 | 119 |
<taxonlabel> |
| 120 |
<rank>family</rank>
|
|
| 121 |
<taxonepithet>$family</taxonepithet>
|
|
| 120 |
<rank>genus</rank>
|
|
| 121 |
<taxonepithet>$genus</taxonepithet>
|
|
| 122 | 122 |
<parent_id> |
| 123 | 123 |
<taxonlabel> |
| 124 |
<rank>order</rank>
|
|
| 125 |
<taxonepithet>$order</taxonepithet>
|
|
| 124 |
<rank>family</rank>
|
|
| 125 |
<taxonepithet>$family</taxonepithet>
|
|
| 126 | 126 |
<parent_id> |
| 127 | 127 |
<taxonlabel> |
| 128 |
<rank>class</rank> |
|
| 128 |
<rank>order</rank> |
|
| 129 |
<taxonepithet>$order</taxonepithet> |
|
| 129 | 130 |
<parent_id> |
| 130 | 131 |
<taxonlabel> |
| 131 |
<rank>phylum</rank>
|
|
| 132 |
<rank>class</rank>
|
|
| 132 | 133 |
<parent_id> |
| 133 | 134 |
<taxonlabel> |
| 134 |
<rank>kingdom</rank> |
|
| 135 |
<taxonepithet>$kingdom</taxonepithet> |
|
| 135 |
<rank>phylum</rank> |
|
| 136 |
<parent_id> |
|
| 137 |
<taxonlabel> |
|
| 138 |
<rank>kingdom</rank> |
|
| 139 |
<taxonepithet>$kingdom</taxonepithet> |
|
| 140 |
</taxonlabel> |
|
| 141 |
</parent_id> |
|
| 136 | 142 |
</taxonlabel> |
| 137 | 143 |
</parent_id> |
| 138 | 144 |
</taxonlabel> |
| ... | ... | |
| 155 | 161 |
</parent_id> |
| 156 | 162 |
</taxonlabel> |
| 157 | 163 |
</parent_id> |
| 158 |
</taxonlabel> |
|
| 159 |
</parent_id> |
|
| 160 |
<taxonomicname> |
|
| 161 |
<_join_words> |
|
| 162 |
<1> |
|
| 163 |
<_taxon_family_require_std> |
|
| 164 |
<family> |
|
| 165 |
<_nullIf> |
|
| 166 |
<null>$scientificName</null> |
|
| 167 |
<value>$family</value> |
|
| 168 |
</_nullIf> |
|
| 169 |
</family> |
|
| 170 |
</_taxon_family_require_std> |
|
| 171 |
</1> |
|
| 172 |
<2> |
|
| 173 |
<_alt> |
|
| 174 |
<1>$scientificName</1> |
|
| 164 |
<taxonomicname> |
|
| 165 |
<_join_words> |
|
| 166 |
<1> |
|
| 167 |
<_taxon_family_require_std> |
|
| 168 |
<family> |
|
| 169 |
<_nullIf> |
|
| 170 |
<null>$scientificName</null> |
|
| 171 |
<value>$family</value> |
|
| 172 |
</_nullIf> |
|
| 173 |
</family> |
|
| 174 |
</_taxon_family_require_std> |
|
| 175 |
</1> |
|
| 175 | 176 |
<2> |
| 176 |
<_join_words> |
|
| 177 |
<2>$genus</2> |
|
| 178 |
<3>$specificEpithet</3> |
|
| 179 |
</_join_words> |
|
| 177 |
<_alt> |
|
| 178 |
<1>$scientificName</1> |
|
| 179 |
<2> |
|
| 180 |
<_join_words> |
|
| 181 |
<2>$genus</2> |
|
| 182 |
<3>$specificEpithet</3> |
|
| 183 |
</_join_words> |
|
| 184 |
</2> |
|
| 185 |
</_alt> |
|
| 180 | 186 |
</2> |
| 181 |
</_alt> |
|
| 182 |
</2> |
|
| 183 |
</_join_words> |
|
| 184 |
</taxonomicname> |
|
| 185 |
</taxonlabel> |
|
| 186 |
</taxonlabel_id> |
|
| 187 |
<family>$family</family> |
|
| 188 |
<genus>$genus</genus> |
|
| 189 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 190 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 191 |
</taxonverbatim> |
|
| 192 |
</taxonverbatim_id> |
|
| 193 |
</taxondetermination> |
|
| 194 |
</taxonoccurrence> |
|
| 195 |
</locationevent> |
|
| 196 |
<locationnarrative> |
|
| 197 |
<_merge> |
|
| 198 |
<1>$locality</1> |
|
| 199 |
<3> |
|
| 200 |
<_label> |
|
| 201 |
<label>habitat</label> |
|
| 202 |
<value>$habitat</value> |
|
| 203 |
</_label> |
|
| 204 |
</3> |
|
| 205 |
</_merge> |
|
| 206 |
</locationnarrative> |
|
| 207 |
<locationplace> |
|
| 208 |
<place_id> |
|
| 209 |
<place> |
|
| 210 |
<coordinates_id> |
|
| 211 |
<coordinates> |
|
| 212 |
<coordsaccuracy_m><_noCV><value>$coordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m> |
|
| 213 |
<latitude_deg> |
|
| 214 |
<_nullIf> |
|
| 215 |
<null>0</null> |
|
| 216 |
<type>float</type> |
|
| 217 |
<value>$decimalLatitude</value> |
|
| 218 |
</_nullIf> |
|
| 219 |
</latitude_deg> |
|
| 220 |
<longitude_deg> |
|
| 221 |
<_nullIf> |
|
| 222 |
<null>0</null> |
|
| 223 |
<type>float</type> |
|
| 224 |
<value>$decimalLongitude</value> |
|
| 225 |
</_nullIf> |
|
| 226 |
</longitude_deg> |
|
| 227 |
<verbatimlatitude>$verbatimLatitude</verbatimlatitude> |
|
| 228 |
<verbatimlongitude>$verbatimLongitude</verbatimlongitude> |
|
| 229 |
</coordinates> |
|
| 230 |
</coordinates_id> |
|
| 231 |
<country>$country</country> |
|
| 232 |
<county>$county</county> |
|
| 233 |
<matched_place_id> |
|
| 187 |
</_join_words> |
|
| 188 |
</taxonomicname> |
|
| 189 |
</taxonlabel> |
|
| 190 |
</taxonlabel_id> |
|
| 191 |
<family>$family</family> |
|
| 192 |
<genus>$genus</genus> |
|
| 193 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 194 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 195 |
</taxonverbatim> |
|
| 196 |
</taxonverbatim_id> |
|
| 197 |
</taxondetermination> |
|
| 198 |
</taxonoccurrence> |
|
| 199 |
</locationevent> |
|
| 200 |
<locationnarrative> |
|
| 201 |
<_merge> |
|
| 202 |
<1>$locality</1> |
|
| 203 |
<3> |
|
| 204 |
<_label> |
|
| 205 |
<label>habitat</label> |
|
| 206 |
<value>$habitat</value> |
|
| 207 |
</_label> |
|
| 208 |
</3> |
|
| 209 |
</_merge> |
|
| 210 |
</locationnarrative> |
|
| 211 |
<locationplace> |
|
| 212 |
<place_id> |
|
| 234 | 213 |
<place> |
| 235 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 236 | 214 |
<coordinates_id> |
| 237 | 215 |
<coordinates> |
| 238 |
<source_id><source><shortname>geoscrub</shortname></source></source_id>
|
|
| 216 |
<coordsaccuracy_m><_noCV><value>$coordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m>
|
|
| 239 | 217 |
<latitude_deg> |
| 240 | 218 |
<_nullIf> |
| 241 | 219 |
<null>0</null> |
| ... | ... | |
| 250 | 228 |
<value>$decimalLongitude</value> |
| 251 | 229 |
</_nullIf> |
| 252 | 230 |
</longitude_deg> |
| 231 |
<verbatimlatitude>$verbatimLatitude</verbatimlatitude> |
|
| 232 |
<verbatimlongitude>$verbatimLongitude</verbatimlongitude> |
|
| 253 | 233 |
</coordinates> |
| 254 | 234 |
</coordinates_id> |
| 255 | 235 |
<country>$country</country> |
| 256 | 236 |
<county>$county</county> |
| 237 |
<matched_place_id> |
|
| 238 |
<place> |
|
| 239 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 240 |
<coordinates_id> |
|
| 241 |
<coordinates> |
|
| 242 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 243 |
<latitude_deg> |
|
| 244 |
<_nullIf> |
|
| 245 |
<null>0</null> |
|
| 246 |
<type>float</type> |
|
| 247 |
<value>$decimalLatitude</value> |
|
| 248 |
</_nullIf> |
|
| 249 |
</latitude_deg> |
|
| 250 |
<longitude_deg> |
|
| 251 |
<_nullIf> |
|
| 252 |
<null>0</null> |
|
| 253 |
<type>float</type> |
|
| 254 |
<value>$decimalLongitude</value> |
|
| 255 |
</_nullIf> |
|
| 256 |
</longitude_deg> |
|
| 257 |
</coordinates> |
|
| 258 |
</coordinates_id> |
|
| 259 |
<country>$country</country> |
|
| 260 |
<county>$county</county> |
|
| 261 |
<stateprovince>$stateProvince</stateprovince> |
|
| 262 |
</place> |
|
| 263 |
</matched_place_id> |
|
| 257 | 264 |
<stateprovince>$stateProvince</stateprovince> |
| 258 | 265 |
</place> |
| 259 |
</matched_place_id> |
|
| 260 |
<stateprovince>$stateProvince</stateprovince> |
|
| 261 |
</place> |
|
| 262 |
</place_id> |
|
| 263 |
</locationplace> |
|
| 264 |
</location> |
|
| 266 |
</place_id> |
|
| 267 |
</locationplace> |
|
| 268 |
</location> |
|
| 269 |
</path> |
|
| 270 |
</_simplifyPath> |
|
| 265 | 271 |
</path> |
| 266 |
</_simplifyPath>
|
|
| 272 |
</_setDefault>
|
|
| 267 | 273 |
</VegBIEN> |
| 268 | 274 |
Inserted 38 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()