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Revision 6403

mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()

View differences:

test.xml.ref
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Put template:
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<VegBIEN>
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    <_simplifyPath id="-1">
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        <next>parent_id</next>
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    <_setDefault id="-1">
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        <col>source_id</col>
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        <value><source><shortname>Madidi</shortname></source></value>
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        <path>
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            <location>
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                <parent_id>
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            <_simplifyPath>
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                <next>parent_id</next>
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                <path>
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                    <location>
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                        <authorlocationcode>$Inventory name</authorlocationcode>
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                        <sourceaccessioncode>$Inventory code</sourceaccessioncode>
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                    </location>
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                </parent_id>
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                <authorlocationcode>$Number of subplot</authorlocationcode>
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                <locationevent>
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                    <project_id><project><projectname>$Expedition</projectname></project></project_id>
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                    <taxonoccurrence>
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                        <aggregateoccurrence>
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                            <notes>$Observations</notes>
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                            <plantobservation>
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                                <collectionnumber>$Tree number</collectionnumber>
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                                <specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate>
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                                <stemobservation>
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                                    <authorstemcode>$Trunk</authorstemcode>
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                                    <definedvalue fkey="tablerecord_id">
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                                        <userdefined_id>
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                                            <userdefined>
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                                                <tablename>stemobservation</tablename>
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                                                <userdefinedname>lianaInfestation</userdefinedname>
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                                            </userdefined>
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                                        </userdefined_id>
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                                        <definedvalue>$Liana presence</definedvalue>
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                                    </definedvalue>
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                                    <diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m>
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                                    <height_m>$Total height</height_m>
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                                    <tag>$Tag number</tag>
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                                    <xposition_m>$Subplot X</xposition_m>
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                                    <yposition_m>$Subplot Y</yposition_m>
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                                </stemobservation>
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                            </plantobservation>
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                        </aggregateoccurrence>
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                        <authortaxoncode>$Tree number</authortaxoncode>
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                        <collector_id><party><fullname>$Index collector</fullname></party></collector_id>
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                        <growthform>$Habit</growthform>
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                        <taxondetermination>
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                            <party_id><party><fullname>$Determined by</fullname></party></party_id>
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                            <taxonverbatim_id>
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                                <taxonverbatim>
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                                    <taxonlabel_id>
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                                        <taxonlabel>
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                                            <matched_label_id>
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                        <parent_id>
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                            <location>
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                                <authorlocationcode>$Inventory name</authorlocationcode>
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                                <sourceaccessioncode>$Inventory code</sourceaccessioncode>
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                            </location>
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                        </parent_id>
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                        <authorlocationcode>$Number of subplot</authorlocationcode>
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                        <locationevent>
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                            <project_id><project><projectname>$Expedition</projectname></project></project_id>
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                            <taxonoccurrence>
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                                <aggregateoccurrence>
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                                    <notes>$Observations</notes>
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                                    <plantobservation>
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                                        <collectionnumber>$Tree number</collectionnumber>
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                                        <specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate>
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                                        <stemobservation>
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                                            <authorstemcode>$Trunk</authorstemcode>
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                                            <definedvalue fkey="tablerecord_id">
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                                                <userdefined_id>
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                                                    <userdefined>
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                                                        <tablename>stemobservation</tablename>
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                                                        <userdefinedname>lianaInfestation</userdefinedname>
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                                                    </userdefined>
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                                                </userdefined_id>
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                                                <definedvalue>$Liana presence</definedvalue>
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                                            </definedvalue>
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                                            <diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m>
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                                            <height_m>$Total height</height_m>
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                                            <tag>$Tag number</tag>
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                                            <xposition_m>$Subplot X</xposition_m>
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                                            <yposition_m>$Subplot Y</yposition_m>
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                                        </stemobservation>
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                                    </plantobservation>
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                                </aggregateoccurrence>
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                                <authortaxoncode>$Tree number</authortaxoncode>
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                                <collector_id><party><fullname>$Index collector</fullname></party></collector_id>
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                                <growthform>$Habit</growthform>
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                                <taxondetermination>
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                                    <party_id><party><fullname>$Determined by</fullname></party></party_id>
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                                    <taxonverbatim_id>
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                                        <taxonverbatim>
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                                            <taxonlabel_id>
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                                                <taxonlabel>
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                                                    <source_id><source><shortname>TNRS</shortname></source></source_id>
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                                                    <matched_label_id>
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                                                        <taxonlabel>
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                                                            <source_id><source><shortname>TNRS</shortname></source></source_id>
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                                                            <taxonomicname>
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                                                                <_join_words>
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                                                                    <1>
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                                                                        <_taxon_family_require_std>
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                                                                            <family>
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                                                                                <_nullIf>
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                                                                                    <null>$Species and morphotypes</null>
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                                                                                    <value>$Family (revised)</value>
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                                                                                </_nullIf>
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                                                                            </family>
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                                                                        </_taxon_family_require_std>
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                                                                    </1>
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                                                                    <2>
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                                                                        <_alt>
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                                                                            <1>$Specie+autor</1>
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                                                                            <2>
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                                                                                <_join_words>
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                                                                                    <1>
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                                                                                        <_alt>
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                                                                                            <1>$Species and morphotypes</1>
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                                                                                            <2>
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                                                                                                <_join_words>
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                                                                                                    <2>$Genera</2>
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                                                                                                    <3>$Specific epithet</3>
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                                                                                                </_join_words>
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                                                                                            </2>
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                                                                                        </_alt>
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                                                                                    </1>
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                                                                                    <2>$Autor (revised)</2>
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                                                                                </_join_words>
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                                                                            </2>
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                                                                        </_alt>
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                                                                    </2>
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                                                                </_join_words>
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                                                            </taxonomicname>
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                                                        </taxonlabel>
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                                                    </matched_label_id>
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                                                    <parent_id>
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                                                        <taxonlabel>
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                                                            <parent_id>
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                                                                <taxonlabel>
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                                                                    <rank>cultivar</rank>
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                                                                    <parent_id>
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                                                                        <taxonlabel>
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                                                                            <rank>forma</rank>
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                                                                            <parent_id>
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                                                                                <taxonlabel>
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                                                                                    <rank>variety</rank>
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                                                                                    <parent_id>
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                                                                                        <taxonlabel>
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                                                                                            <rank>subspecies</rank>
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                                                                                            <parent_id>
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                                                                                                <taxonlabel>
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                                                                                                    <rank>species</rank>
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                                                                                                    <taxonepithet>$Specific epithet</taxonepithet>
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                                                                                                    <parent_id>
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                                                                                                        <taxonlabel>
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                                                                                                            <rank>genus</rank>
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                                                                                                            <taxonepithet>$Genera</taxonepithet>
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                                                                                                            <parent_id>
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                                                                                                                <taxonlabel>
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                                                                                                                    <rank>family</rank>
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                                                                                                                    <taxonepithet>$Family (revised)</taxonepithet>
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                                                                                                                </taxonlabel>
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                                                                                                            </parent_id>
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                                                                                                        </taxonlabel>
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                                                                                                    </parent_id>
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                                                                                                </taxonlabel>
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                                                                                            </parent_id>
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                                                                                        </taxonlabel>
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                                                                                    </parent_id>
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                                                                                </taxonlabel>
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                                                                            </parent_id>
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                                                                        </taxonlabel>
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                                                                    </parent_id>
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                                                                </taxonlabel>
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                                                            </parent_id>
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                                                        </taxonlabel>
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                                                    </parent_id>
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                                                    <taxonomicname>
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                                                        <_join_words>
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                                                            <1>
......
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                                                        </_join_words>
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                                                    </taxonomicname>
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                                                </taxonlabel>
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                                            </matched_label_id>
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                                            <parent_id>
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                                            </taxonlabel_id>
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                                            <author>$Autor (revised)</author>
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                                            <family>$Family (revised)</family>
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                                            <genus>$Genera</genus>
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                                            <specific_epithet>$Specific epithet</specific_epithet>
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                                            <taxonname>$Species and morphotypes</taxonname>
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                                            <taxonomicname>$Specie+autor</taxonomicname>
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                                        </taxonverbatim>
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                                    </taxonverbatim_id>
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                                    <taxonfit>$Qualifier</taxonfit>
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                                </taxondetermination>
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                                <taxondetermination>
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                                    <isoriginal>true</isoriginal>
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                                    <taxonverbatim_id>
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                                        <taxonverbatim>
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                                            <taxonlabel_id>
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                                                <taxonlabel>
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                                                    <matched_label_id>
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                                                        <taxonlabel>
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                                                            <source_id><source><shortname>TNRS</shortname></source></source_id>
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                                                            <taxonomicname>
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                                                                <_join_words>
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                                                                    <1><_taxon_family_require_std><family>$Field family</family></_taxon_family_require_std></1>
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                                                                    <2>$Field name</2>
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                                                                </_join_words>
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                                                            </taxonomicname>
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                                                        </taxonlabel>
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                                                    </matched_label_id>
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                                                    <parent_id>
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                                                        <taxonlabel>
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                                                            <rank>cultivar</rank>
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                                                            <parent_id>
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                                                                <taxonlabel>
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                                                                    <rank>forma</rank>
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                                                                    <rank>cultivar</rank>
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                                                                    <parent_id>
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                                                                        <taxonlabel>
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                                                                            <rank>variety</rank>
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                                                                            <rank>forma</rank>
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                                                                            <parent_id>
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                                                                                <taxonlabel>
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                                                                                    <rank>subspecies</rank>
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                                                                                    <rank>variety</rank>
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                                                                                    <parent_id>
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                                                                                        <taxonlabel>
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                                                                                            <rank>species</rank>
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                                                                                            <taxonepithet>$Specific epithet</taxonepithet>
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                                                                                            <rank>subspecies</rank>
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                                                                                            <parent_id>
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                                                                                                <taxonlabel>
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                                                                                                    <rank>genus</rank>
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                                                                                                    <taxonepithet>$Genera</taxonepithet>
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                                                                                                    <rank>species</rank>
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                                                                                                    <parent_id>
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                                                                                                        <taxonlabel>
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                                                                                                            <rank>family</rank>
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                                                                                                            <taxonepithet>$Family (revised)</taxonepithet>
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                                                                                                            <rank>genus</rank>
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                                                                                                            <taxonepithet>$Field name</taxonepithet>
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                                                                                                            <parent_id>
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                                                                                                                <taxonlabel>
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                                                                                                                    <rank>family</rank>
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                                                                                                                    <taxonepithet>$Field family</taxonepithet>
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                                                                                                                </taxonlabel>
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                                                                                                            </parent_id>
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                                                                                                        </taxonlabel>
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                                                                                                    </parent_id>
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                                                                                                </taxonlabel>
......
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                                                            </parent_id>
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                                                        </taxonlabel>
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                                                    </parent_id>
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                                                </taxonlabel>
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                                            </parent_id>
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                                            <taxonomicname>
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                                                <_join_words>
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                                                    <1>
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                                                        <_taxon_family_require_std>
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                                                            <family>
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                                                                <_nullIf>
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                                                                    <null>$Species and morphotypes</null>
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                                                                    <value>$Family (revised)</value>
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                                                                </_nullIf>
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                                                            </family>
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                                                        </_taxon_family_require_std>
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                                                    </1>
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                                                    <2>
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                                                        <_alt>
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                                                            <1>$Specie+autor</1>
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                                                            <2>
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                                                                <_join_words>
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                                                                    <1>
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                                                                        <_alt>
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                                                                            <1>$Species and morphotypes</1>
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                                                                            <2>
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                                                                                <_join_words>
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                                                                                    <2>$Genera</2>
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                                                                                    <3>$Specific epithet</3>
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                                                                                </_join_words>
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                                                                            </2>
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                                                                        </_alt>
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                                                                    </1>
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                                                                    <2>$Autor (revised)</2>
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                                                                </_join_words>
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                                                            </2>
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                                                        </_alt>
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                                                    </2>
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                                                </_join_words>
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                                            </taxonomicname>
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                                        </taxonlabel>
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                                    </taxonlabel_id>
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                                    <author>$Autor (revised)</author>
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                                    <family>$Family (revised)</family>
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                                    <genus>$Genera</genus>
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                                    <specific_epithet>$Specific epithet</specific_epithet>
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                                    <taxonname>$Species and morphotypes</taxonname>
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                                    <taxonomicname>$Specie+autor</taxonomicname>
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                                </taxonverbatim>
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                            </taxonverbatim_id>
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                            <taxonfit>$Qualifier</taxonfit>
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                        </taxondetermination>
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                        <taxondetermination>
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                            <isoriginal>true</isoriginal>
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                            <taxonverbatim_id>
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                                <taxonverbatim>
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                                    <taxonlabel_id>
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                                        <taxonlabel>
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                                            <matched_label_id>
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                                                <taxonlabel>
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                                                    <source_id><source><shortname>TNRS</shortname></source></source_id>
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                                                    <taxonomicname>
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                                                        <_join_words>
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                                                            <1><_taxon_family_require_std><family>$Field family</family></_taxon_family_require_std></1>
......
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                                                        </_join_words>
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                                                    </taxonomicname>
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                                                </taxonlabel>
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                                            </matched_label_id>
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                                            <parent_id>
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                                                <taxonlabel>
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                                                    <parent_id>
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                                                        <taxonlabel>
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                                                            <rank>cultivar</rank>
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                                                            <parent_id>
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                                                                <taxonlabel>
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                                                                    <rank>forma</rank>
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                                                                    <parent_id>
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                                                                        <taxonlabel>
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                                                                            <rank>variety</rank>
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                                                                            <parent_id>
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                                                                                <taxonlabel>
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                                                                                    <rank>subspecies</rank>
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                                                                                    <parent_id>
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                                                                                        <taxonlabel>
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                                                                                            <rank>species</rank>
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                                                                                            <parent_id>
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                                                                                                <taxonlabel>
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                                                                                                    <rank>genus</rank>
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                                                                                                    <taxonepithet>$Field name</taxonepithet>
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                                                                                                    <parent_id>
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                                                                                                        <taxonlabel>
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                                                                                                            <rank>family</rank>
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                                                                                                            <taxonepithet>$Field family</taxonepithet>
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                                                                                                        </taxonlabel>
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                                                                                                    </parent_id>
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                                                                                                </taxonlabel>
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                                                                                            </parent_id>
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                                                                                        </taxonlabel>
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                                                                                    </parent_id>
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                                                                                </taxonlabel>
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                                                                            </parent_id>
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                                                                        </taxonlabel>
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                                                                    </parent_id>
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                                                                </taxonlabel>
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                                                            </parent_id>
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                                                        </taxonlabel>
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                                                    </parent_id>
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                                                </taxonlabel>
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                                            </parent_id>
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                                            <taxonomicname>
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                                                <_join_words>
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                                                    <1><_taxon_family_require_std><family>$Field family</family></_taxon_family_require_std></1>
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                                                    <2>$Field name</2>
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                                                </_join_words>
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                                            </taxonomicname>
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                                        </taxonlabel>
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                                    </taxonlabel_id>
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                                    <family>$Field family</family>
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                                    <genus>$Field name</genus>
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                                </taxonverbatim>
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                            </taxonverbatim_id>
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                        </taxondetermination>
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                    </taxonoccurrence>
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                </locationevent>
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                <sourceaccessioncode>
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                    <_join>
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                        <1>$Inventory code</1>
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                        <2>$Number of subplot</2>
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                    </_join>
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                </sourceaccessioncode>
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            </location>
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                                            </taxonlabel_id>
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                                            <family>$Field family</family>
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                                            <genus>$Field name</genus>
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                                        </taxonverbatim>
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                                    </taxonverbatim_id>
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                                </taxondetermination>
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                            </taxonoccurrence>
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                        </locationevent>
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                        <sourceaccessioncode>
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                            <_join>
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                                <1>$Inventory code</1>
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                                <2>$Number of subplot</2>
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                            </_join>
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                        </sourceaccessioncode>
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                    </location>
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                </path>
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            </_simplifyPath>
259 265
        </path>
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    </_simplifyPath>
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    </_setDefault>
261 267
</VegBIEN>
262 268
Inserted 44 new rows into database

Also available in: Unified diff