Revision 6403
Added by Aaron Marcuse-Kubitza over 11 years ago
test.xml.ref | ||
---|---|---|
1 | 1 |
Put template: |
2 | 2 |
<VegBIEN> |
3 |
<_simplifyPath id="-1"> |
|
4 |
<next>parent_id</next> |
|
3 |
<_setDefault id="-1"> |
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<col>source_id</col> |
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<value><source><shortname>NY</shortname></source></value> |
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5 | 6 |
<path> |
6 |
<location> |
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<authorlocationcode> |
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<_alt> |
|
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<1>$UniqueNYInternalRecordNumber</1> |
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<2> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3>$CatalogNumber</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation_m> |
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<_avg> |
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<max>$MaximumElevation</max> |
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<min> |
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<_nullIf> |
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<null>.</null> |
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<value>$MinimumElevation</value> |
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</_nullIf> |
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</min> |
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</_avg> |
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</elevation_m> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<count>$IndividualCount</count> |
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<notes> |
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<_join> |
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<1>$Notes</1> |
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<2> |
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<_label> |
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<label>plant fungus</label> |
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<value>$PlantFungusDescription</value> |
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</_label> |
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</2> |
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</_join> |
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</notes> |
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<plantobservation> |
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<collectionnumber>$FieldNumber</collectionnumber> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$Sex</definedvalue> |
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</definedvalue> |
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<specimenreplicate> |
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<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
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<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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<institution_id> |
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<sourcename> |
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<matched_source_id><source><shortname>$InstitutionCode</shortname></source></matched_source_id> |
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<name>$InstitutionCode</name> |
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</sourcename> |
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</institution_id> |
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<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$Collector</fullname></party></collector_id> |
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<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
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<taxondetermination> |
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<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
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<taxonverbatim_id> |
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<taxonverbatim> |
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<taxonlabel_id> |
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<taxonlabel> |
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<matched_label_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<authorlocationcode> |
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<_alt> |
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<1>$UniqueNYInternalRecordNumber</1> |
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<2> |
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<_join> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3>$CatalogNumber</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation_m> |
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<_avg> |
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<max>$MaximumElevation</max> |
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<min> |
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<_nullIf> |
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<null>.</null> |
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<value>$MinimumElevation</value> |
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</_nullIf> |
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</min> |
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</_avg> |
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</elevation_m> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<count>$IndividualCount</count> |
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<notes> |
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<_join> |
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<1>$Notes</1> |
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<2> |
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<_label> |
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<label>plant fungus</label> |
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<value>$PlantFungusDescription</value> |
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</_label> |
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</2> |
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</_join> |
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</notes> |
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<plantobservation> |
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<collectionnumber>$FieldNumber</collectionnumber> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$Sex</definedvalue> |
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</definedvalue> |
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<specimenreplicate> |
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<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
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<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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<institution_id> |
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<sourcename> |
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<matched_source_id><source><shortname>$InstitutionCode</shortname></source></matched_source_id> |
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<name>$InstitutionCode</name> |
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</sourcename> |
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</institution_id> |
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<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
|
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$Collector</fullname></party></collector_id> |
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<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
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<taxondetermination> |
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<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
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<taxonverbatim_id> |
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<taxonverbatim> |
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104 |
<taxonlabel_id> |
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103 | 105 |
<taxonlabel> |
104 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
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<taxonomicname> |
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106 |
<_join_words> |
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<1> |
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108 |
<_taxon_family_require_std> |
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109 |
<family> |
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110 |
<_nullIf> |
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<null>$ScientificName</null> |
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<value>$Family</value> |
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</_nullIf> |
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</family> |
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</_taxon_family_require_std> |
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</1> |
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<2> |
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<matched_label_id> |
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<taxonlabel> |
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<source_id><source><shortname>TNRS</shortname></source></source_id> |
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<taxonomicname> |
|
118 | 110 |
<_join_words> |
119 | 111 |
<1> |
120 |
<_alt> |
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<1>$ScientificName</1> |
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<2> |
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<_join_words> |
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<2>$Genus</2> |
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<3>$Species</3> |
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<4>$Subspecies</4> |
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</_join_words> |
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</2> |
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</_alt> |
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<_taxon_family_require_std> |
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<family> |
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<_nullIf> |
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<null>$ScientificName</null> |
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<value>$Family</value> |
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</_nullIf> |
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</family> |
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</_taxon_family_require_std> |
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130 | 120 |
</1> |
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<2>$ScientificNameAuthor</2> |
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<2> |
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<_join_words> |
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<1> |
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<_alt> |
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<1>$ScientificName</1> |
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<2> |
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127 |
<_join_words> |
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<2>$Genus</2> |
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<3>$Species</3> |
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<4>$Subspecies</4> |
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</_join_words> |
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</2> |
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</_alt> |
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</1> |
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<2>$ScientificNameAuthor</2> |
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</_join_words> |
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</2> |
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132 | 138 |
</_join_words> |
133 |
</2> |
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</_join_words> |
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</taxonomicname> |
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136 |
</taxonlabel> |
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</matched_label_id> |
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138 |
<creationdate> |
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139 |
<_date> |
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140 |
<day> |
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<_nullIf> |
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<null>0</null> |
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143 |
<type>float</type> |
|
144 |
<value>$DayIdentified</value> |
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145 |
</_nullIf> |
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146 |
</day> |
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147 |
<month> |
|
148 |
<_nullIf> |
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149 |
<null>0</null> |
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150 |
<type>float</type> |
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151 |
<value>$MonthIdentified</value> |
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152 |
</_nullIf> |
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153 |
</month> |
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154 |
<year> |
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155 |
<_nullIf> |
|
156 |
<null>0</null> |
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157 |
<type>float</type> |
|
158 |
<value>$YearIdentified</value> |
|
159 |
</_nullIf> |
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</year> |
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161 |
</_date> |
|
162 |
</creationdate> |
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163 |
<parent_id> |
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164 |
<taxonlabel> |
|
139 |
</taxonomicname> |
|
140 |
</taxonlabel> |
|
141 |
</matched_label_id> |
|
142 |
<creationdate> |
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143 |
<_date> |
|
144 |
<day> |
|
145 |
<_nullIf> |
|
146 |
<null>0</null> |
|
147 |
<type>float</type> |
|
148 |
<value>$DayIdentified</value> |
|
149 |
</_nullIf> |
|
150 |
</day> |
|
151 |
<month> |
|
152 |
<_nullIf> |
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153 |
<null>0</null> |
|
154 |
<type>float</type> |
|
155 |
<value>$MonthIdentified</value> |
|
156 |
</_nullIf> |
|
157 |
</month> |
|
158 |
<year> |
|
159 |
<_nullIf> |
|
160 |
<null>0</null> |
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161 |
<type>float</type> |
|
162 |
<value>$YearIdentified</value> |
|
163 |
</_nullIf> |
|
164 |
</year> |
|
165 |
</_date> |
|
166 |
</creationdate> |
|
165 | 167 |
<parent_id> |
166 | 168 |
<taxonlabel> |
167 |
<rank>cultivar</rank> |
|
168 | 169 |
<parent_id> |
169 | 170 |
<taxonlabel> |
170 |
<rank>forma</rank>
|
|
171 |
<rank>cultivar</rank>
|
|
171 | 172 |
<parent_id> |
172 | 173 |
<taxonlabel> |
173 |
<rank>variety</rank>
|
|
174 |
<rank>forma</rank>
|
|
174 | 175 |
<parent_id> |
175 | 176 |
<taxonlabel> |
176 |
<rank>subspecies</rank> |
|
177 |
<taxonepithet>$Subspecies</taxonepithet> |
|
177 |
<rank>variety</rank> |
|
178 | 178 |
<parent_id> |
179 | 179 |
<taxonlabel> |
180 |
<rank>species</rank> |
|
181 |
<taxonepithet>$Species</taxonepithet> |
|
180 |
<rank>subspecies</rank>
|
|
181 |
<taxonepithet>$Subspecies</taxonepithet>
|
|
182 | 182 |
<parent_id> |
183 | 183 |
<taxonlabel> |
184 |
<rank>genus</rank>
|
|
185 |
<taxonepithet>$Genus</taxonepithet>
|
|
184 |
<rank>species</rank>
|
|
185 |
<taxonepithet>$Species</taxonepithet>
|
|
186 | 186 |
<parent_id> |
187 | 187 |
<taxonlabel> |
188 |
<rank>family</rank>
|
|
189 |
<taxonepithet>$Family</taxonepithet>
|
|
188 |
<rank>genus</rank>
|
|
189 |
<taxonepithet>$Genus</taxonepithet>
|
|
190 | 190 |
<parent_id> |
191 | 191 |
<taxonlabel> |
192 |
<rank>order</rank>
|
|
193 |
<taxonepithet>$Order</taxonepithet>
|
|
192 |
<rank>family</rank>
|
|
193 |
<taxonepithet>$Family</taxonepithet>
|
|
194 | 194 |
<parent_id> |
195 | 195 |
<taxonlabel> |
196 |
<rank>class</rank>
|
|
197 |
<taxonepithet>$Class</taxonepithet>
|
|
196 |
<rank>order</rank>
|
|
197 |
<taxonepithet>$Order</taxonepithet>
|
|
198 | 198 |
<parent_id> |
199 | 199 |
<taxonlabel> |
200 |
<rank>phylum</rank>
|
|
201 |
<taxonepithet>$Phylum</taxonepithet>
|
|
200 |
<rank>class</rank>
|
|
201 |
<taxonepithet>$Class</taxonepithet>
|
|
202 | 202 |
<parent_id> |
203 | 203 |
<taxonlabel> |
204 |
<rank>kingdom</rank> |
|
205 |
<taxonepithet>$Kingdom</taxonepithet> |
|
204 |
<rank>phylum</rank> |
|
205 |
<taxonepithet>$Phylum</taxonepithet> |
|
206 |
<parent_id> |
|
207 |
<taxonlabel> |
|
208 |
<rank>kingdom</rank> |
|
209 |
<taxonepithet>$Kingdom</taxonepithet> |
|
210 |
</taxonlabel> |
|
211 |
</parent_id> |
|
206 | 212 |
</taxonlabel> |
207 | 213 |
</parent_id> |
208 | 214 |
</taxonlabel> |
... | ... | |
225 | 231 |
</parent_id> |
226 | 232 |
</taxonlabel> |
227 | 233 |
</parent_id> |
228 |
</taxonlabel> |
|
229 |
</parent_id> |
|
230 |
<taxonomicname> |
|
231 |
<_join_words> |
|
232 |
<1> |
|
233 |
<_taxon_family_require_std> |
|
234 |
<family> |
|
235 |
<_nullIf> |
|
236 |
<null>$ScientificName</null> |
|
237 |
<value>$Family</value> |
|
238 |
</_nullIf> |
|
239 |
</family> |
|
240 |
</_taxon_family_require_std> |
|
241 |
</1> |
|
242 |
<2> |
|
234 |
<taxonomicname> |
|
243 | 235 |
<_join_words> |
244 | 236 |
<1> |
245 |
<_alt> |
|
246 |
<1>$ScientificName</1> |
|
247 |
<2> |
|
248 |
<_join_words> |
|
249 |
<2>$Genus</2> |
|
250 |
<3>$Species</3> |
|
251 |
<4>$Subspecies</4> |
|
252 |
</_join_words> |
|
253 |
</2> |
|
254 |
</_alt> |
|
237 |
<_taxon_family_require_std> |
|
238 |
<family> |
|
239 |
<_nullIf> |
|
240 |
<null>$ScientificName</null> |
|
241 |
<value>$Family</value> |
|
242 |
</_nullIf> |
|
243 |
</family> |
|
244 |
</_taxon_family_require_std> |
|
255 | 245 |
</1> |
256 |
<2>$ScientificNameAuthor</2> |
|
246 |
<2> |
|
247 |
<_join_words> |
|
248 |
<1> |
|
249 |
<_alt> |
|
250 |
<1>$ScientificName</1> |
|
251 |
<2> |
|
252 |
<_join_words> |
|
253 |
<2>$Genus</2> |
|
254 |
<3>$Species</3> |
|
255 |
<4>$Subspecies</4> |
|
256 |
</_join_words> |
|
257 |
</2> |
|
258 |
</_alt> |
|
259 |
</1> |
|
260 |
<2>$ScientificNameAuthor</2> |
|
261 |
</_join_words> |
|
262 |
</2> |
|
257 | 263 |
</_join_words> |
258 |
</2> |
|
259 |
</_join_words> |
|
260 |
</taxonomicname> |
|
261 |
</taxonlabel> |
|
262 |
</taxonlabel_id> |
|
263 |
<author>$ScientificNameAuthor</author> |
|
264 |
<family>$Family</family> |
|
265 |
<genus>$Genus</genus> |
|
266 |
<specific_epithet>$Species</specific_epithet> |
|
267 |
<taxonname>$ScientificName</taxonname> |
|
268 |
</taxonverbatim> |
|
269 |
</taxonverbatim_id> |
|
270 |
<determinationdate> |
|
271 |
<_date> |
|
272 |
<day> |
|
273 |
<_nullIf> |
|
274 |
<null>0</null> |
|
275 |
<type>float</type> |
|
276 |
<value>$DayIdentified</value> |
|
277 |
</_nullIf> |
|
278 |
</day> |
|
279 |
<month> |
|
280 |
<_nullIf> |
|
281 |
<null>0</null> |
|
282 |
<type>float</type> |
|
283 |
<value>$MonthIdentified</value> |
|
284 |
</_nullIf> |
|
285 |
</month> |
|
286 |
<year> |
|
287 |
<_nullIf> |
|
288 |
<null>0</null> |
|
289 |
<type>float</type> |
|
290 |
<value>$YearIdentified</value> |
|
291 |
</_nullIf> |
|
292 |
</year> |
|
293 |
</_date> |
|
294 |
</determinationdate> |
|
295 |
</taxondetermination> |
|
296 |
</taxonoccurrence> |
|
297 |
<waterdepth_m> |
|
298 |
<_avg> |
|
299 |
<max>$MaximumDepth</max> |
|
300 |
<min>$MinimumDepth</min> |
|
301 |
</_avg> |
|
302 |
</waterdepth_m> |
|
303 |
</locationevent> |
|
304 |
<locationnarrative> |
|
305 |
<_merge> |
|
306 |
<1> |
|
307 |
<_join> |
|
308 |
<1>$Locality</1> |
|
309 |
<2> |
|
310 |
<_label> |
|
311 |
<label>substrate</label> |
|
312 |
<value>$Substrate</value> |
|
313 |
</_label> |
|
314 |
</2> |
|
264 |
</taxonomicname> |
|
265 |
</taxonlabel> |
|
266 |
</taxonlabel_id> |
|
267 |
<author>$ScientificNameAuthor</author> |
|
268 |
<family>$Family</family> |
|
269 |
<genus>$Genus</genus> |
|
270 |
<specific_epithet>$Species</specific_epithet> |
|
271 |
<taxonname>$ScientificName</taxonname> |
|
272 |
</taxonverbatim> |
|
273 |
</taxonverbatim_id> |
|
274 |
<determinationdate> |
|
275 |
<_date> |
|
276 |
<day> |
|
277 |
<_nullIf> |
|
278 |
<null>0</null> |
|
279 |
<type>float</type> |
|
280 |
<value>$DayIdentified</value> |
|
281 |
</_nullIf> |
|
282 |
</day> |
|
283 |
<month> |
|
284 |
<_nullIf> |
|
285 |
<null>0</null> |
|
286 |
<type>float</type> |
|
287 |
<value>$MonthIdentified</value> |
|
288 |
</_nullIf> |
|
289 |
</month> |
|
290 |
<year> |
|
291 |
<_nullIf> |
|
292 |
<null>0</null> |
|
293 |
<type>float</type> |
|
294 |
<value>$YearIdentified</value> |
|
295 |
</_nullIf> |
|
296 |
</year> |
|
297 |
</_date> |
|
298 |
</determinationdate> |
|
299 |
</taxondetermination> |
|
300 |
</taxonoccurrence> |
|
301 |
<waterdepth_m> |
|
302 |
<_avg> |
|
303 |
<max>$MaximumDepth</max> |
|
304 |
<min>$MinimumDepth</min> |
|
305 |
</_avg> |
|
306 |
</waterdepth_m> |
|
307 |
</locationevent> |
|
308 |
<locationnarrative> |
|
309 |
<_merge> |
|
310 |
<1> |
|
311 |
<_join> |
|
312 |
<1>$Locality</1> |
|
313 |
<2> |
|
314 |
<_label> |
|
315 |
<label>substrate</label> |
|
316 |
<value>$Substrate</value> |
|
317 |
</_label> |
|
318 |
</2> |
|
319 |
<3> |
|
320 |
<_label> |
|
321 |
<label>vegetation</label> |
|
322 |
<value>$Vegetation</value> |
|
323 |
</_label> |
|
324 |
</3> |
|
325 |
</_join> |
|
326 |
</1> |
|
315 | 327 |
<3> |
316 | 328 |
<_label> |
317 |
<label>vegetation</label>
|
|
318 |
<value>$Vegetation</value>
|
|
329 |
<label>habitat</label>
|
|
330 |
<value>$Habitat</value>
|
|
319 | 331 |
</_label> |
320 | 332 |
</3> |
321 |
</_join> |
|
322 |
</1> |
|
323 |
<3> |
|
324 |
<_label> |
|
325 |
<label>habitat</label> |
|
326 |
<value>$Habitat</value> |
|
327 |
</_label> |
|
328 |
</3> |
|
329 |
</_merge> |
|
330 |
</locationnarrative> |
|
331 |
<locationplace> |
|
332 |
<place_id> |
|
333 |
<place> |
|
334 |
<coordinates_id> |
|
335 |
<coordinates> |
|
336 |
<coordsaccuracy_m><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy_m> |
|
337 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
338 |
<latitude_deg> |
|
339 |
<_nullIf> |
|
340 |
<null>0</null> |
|
341 |
<type>float</type> |
|
342 |
<value>$Latitude</value> |
|
343 |
</_nullIf> |
|
344 |
</latitude_deg> |
|
345 |
<longitude_deg> |
|
346 |
<_nullIf> |
|
347 |
<null>0</null> |
|
348 |
<type>float</type> |
|
349 |
<value>$Longitude</value> |
|
350 |
</_nullIf> |
|
351 |
</longitude_deg> |
|
352 |
</coordinates> |
|
353 |
</coordinates_id> |
|
354 |
<continent>$ContinentOcean</continent> |
|
355 |
<country>$Country</country> |
|
356 |
<county>$County</county> |
|
357 |
<matched_place_id> |
|
333 |
</_merge> |
|
334 |
</locationnarrative> |
|
335 |
<locationplace> |
|
336 |
<place_id> |
|
358 | 337 |
<place> |
359 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
360 | 338 |
<coordinates_id> |
361 | 339 |
<coordinates> |
362 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
340 |
<coordsaccuracy_m><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy_m> |
|
341 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
363 | 342 |
<latitude_deg> |
364 | 343 |
<_nullIf> |
365 | 344 |
<null>0</null> |
... | ... | |
376 | 355 |
</longitude_deg> |
377 | 356 |
</coordinates> |
378 | 357 |
</coordinates_id> |
358 |
<continent>$ContinentOcean</continent> |
|
379 | 359 |
<country>$Country</country> |
380 | 360 |
<county>$County</county> |
361 |
<matched_place_id> |
|
362 |
<place> |
|
363 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
364 |
<coordinates_id> |
|
365 |
<coordinates> |
|
366 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
367 |
<latitude_deg> |
|
368 |
<_nullIf> |
|
369 |
<null>0</null> |
|
370 |
<type>float</type> |
|
371 |
<value>$Latitude</value> |
|
372 |
</_nullIf> |
|
373 |
</latitude_deg> |
|
374 |
<longitude_deg> |
|
375 |
<_nullIf> |
|
376 |
<null>0</null> |
|
377 |
<type>float</type> |
|
378 |
<value>$Longitude</value> |
|
379 |
</_nullIf> |
|
380 |
</longitude_deg> |
|
381 |
</coordinates> |
|
382 |
</coordinates_id> |
|
383 |
<country>$Country</country> |
|
384 |
<county>$County</county> |
|
385 |
<stateprovince>$StateProvince</stateprovince> |
|
386 |
</place> |
|
387 |
</matched_place_id> |
|
381 | 388 |
<stateprovince>$StateProvince</stateprovince> |
382 | 389 |
</place> |
383 |
</matched_place_id> |
|
384 |
<stateprovince>$StateProvince</stateprovince> |
|
385 |
</place> |
|
386 |
</place_id> |
|
387 |
</locationplace> |
|
388 |
</location> |
|
390 |
</place_id> |
|
391 |
</locationplace> |
|
392 |
</location> |
|
393 |
</path> |
|
394 |
</_simplifyPath> |
|
389 | 395 |
</path> |
390 |
</_simplifyPath>
|
|
396 |
</_setDefault>
|
|
391 | 397 |
</VegBIEN> |
392 | 398 |
Inserted 45 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()