Revision 6403
Added by Aaron Marcuse-Kubitza over 11 years ago
test.xml.ref | ||
---|---|---|
1 | 1 |
Put template: |
2 | 2 |
<VegBIEN> |
3 |
<_simplifyPath id="-1"> |
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<next>parent_id</next> |
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<_setDefault id="-1"> |
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<col>source_id</col> |
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<value><source><shortname>TRT</shortname></source></value> |
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5 | 6 |
<path> |
6 |
<location>
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<authorlocationcode>
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<_alt>
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<1>$id</1>
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<2>
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<_join>
|
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<1>$institutionCode</1>
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<_simplifyPath>
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<next>parent_id</next>
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<path>
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<location>
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<authorlocationcode>
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<_alt>
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<1>$id</1>
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13 | 14 |
<2> |
14 | 15 |
<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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<1>$institutionCode</1> |
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<2> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</2> |
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<3>$catalogNumber</3> |
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17 | 24 |
</_join> |
18 | 25 |
</2> |
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<3>$catalogNumber</3> |
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</_join> |
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</2> |
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</_alt> |
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</authorlocationcode> |
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<elevation_m> |
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<_alt> |
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<1> |
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<_units> |
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<to>m</to> |
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<to></to> |
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<value>$verbatimElevation</value> |
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</_units> |
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</1> |
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<2> |
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<_avg> |
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<max>$maximumElevationInMeters</max> |
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<min>$minimumElevationInMeters</min> |
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</_avg> |
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</2> |
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</_alt> |
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</elevation_m> |
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<locationevent> |
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<obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate> |
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<obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<plantobservation> |
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<collectionnumber>$recordNumber</collectionnumber> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$sex</definedvalue> |
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</definedvalue> |
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<specimenreplicate> |
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<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
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<collectioncode_dwc> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</collectioncode_dwc> |
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<institution_id> |
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<sourcename> |
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<matched_source_id><source><shortname>$institutionCode</shortname></source></matched_source_id> |
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<name>$institutionCode</name> |
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</sourcename> |
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</institution_id> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
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<iscultivated> |
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<_map> |
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<cultivated>t</cultivated> |
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<wild>f</wild> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</iscultivated> |
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<isnative> |
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<_map> |
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<native>t</native> |
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<exotic>f</exotic> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</isnative> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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<taxondetermination> |
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<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
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<taxonverbatim_id> |
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<taxonverbatim> |
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<taxonlabel_id> |
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<taxonlabel> |
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<matched_label_id> |
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</_alt> |
|
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</authorlocationcode> |
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<elevation_m> |
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<_alt> |
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<1> |
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<_units> |
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<to>m</to> |
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<to></to> |
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<value>$verbatimElevation</value> |
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</_units> |
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</1> |
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<2> |
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<_avg> |
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<max>$maximumElevationInMeters</max> |
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<min>$minimumElevationInMeters</min> |
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</_avg> |
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</2> |
|
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</_alt> |
|
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</elevation_m> |
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<locationevent> |
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<obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate> |
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<obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<plantobservation> |
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<collectionnumber>$recordNumber</collectionnumber> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$sex</definedvalue> |
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</definedvalue> |
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<specimenreplicate> |
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<catalognumber_dwc>$catalogNumber</catalognumber_dwc> |
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<collectioncode_dwc> |
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<_join> |
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<1>$collectionCode</1> |
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<2>$collectionID</2> |
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</_join> |
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</collectioncode_dwc> |
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<institution_id> |
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<sourcename> |
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<matched_source_id><source><shortname>$institutionCode</shortname></source></matched_source_id> |
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<name>$institutionCode</name> |
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</sourcename> |
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</institution_id> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
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<iscultivated> |
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<_map> |
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<cultivated>t</cultivated> |
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<wild>f</wild> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
|
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</iscultivated> |
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<isnative> |
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<_map> |
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<native>t</native> |
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<exotic>f</exotic> |
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<*></*> |
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<value>$establishmentMeans</value> |
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</_map> |
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</isnative> |
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<sourceaccessioncode>$id</sourceaccessioncode> |
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<taxondetermination> |
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<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
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<taxonverbatim_id> |
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<taxonverbatim> |
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<taxonlabel_id> |
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100 | 102 |
<taxonlabel> |
101 |
<source_id><source><shortname>TNRS</shortname></source></source_id> |
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102 |
<taxonomicname> |
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103 |
<_join_words> |
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104 |
<1> |
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105 |
<_taxon_family_require_std> |
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106 |
<family> |
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107 |
<_nullIf> |
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<null>$scientificName</null> |
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109 |
<value>$family</value> |
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110 |
</_nullIf> |
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</family> |
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</_taxon_family_require_std> |
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</1> |
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<2> |
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<_alt> |
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<1>$scientificName</1> |
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103 |
<matched_label_id> |
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<taxonlabel> |
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<source_id><source><shortname>TNRS</shortname></source></source_id> |
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<taxonomicname> |
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<_join_words> |
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108 |
<1> |
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109 |
<_taxon_family_require_std> |
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110 |
<family> |
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111 |
<_nullIf> |
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<null>$scientificName</null> |
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<value>$family</value> |
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</_nullIf> |
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</family> |
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</_taxon_family_require_std> |
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</1> |
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117 | 118 |
<2> |
118 |
<_join_words> |
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<1> |
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<_alt> |
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<1>$scientificName</1> |
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<2> |
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120 | 122 |
<_join_words> |
121 |
<2>$genus</2> |
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122 |
<3>$specificEpithet</3> |
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<5> |
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<1> |
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124 | 124 |
<_join_words> |
125 |
<1> |
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<_if name="if has infraspecificEpithet"> |
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127 |
<cond>$infraspecificEpithet</cond> |
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<then>$taxonRank</then> |
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</_if> |
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</1> |
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<2>$infraspecificEpithet</2> |
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<2>$genus</2> |
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126 |
<3>$specificEpithet</3> |
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127 |
<5> |
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128 |
<_join_words> |
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129 |
<1> |
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<_if name="if has infraspecificEpithet"> |
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131 |
<cond>$infraspecificEpithet</cond> |
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132 |
<then>$taxonRank</then> |
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</_if> |
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</1> |
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135 |
<2>$infraspecificEpithet</2> |
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136 |
</_join_words> |
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</5> |
|
132 | 138 |
</_join_words> |
133 |
</5> |
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139 |
</1> |
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140 |
<2>$scientificNameAuthorship</2> |
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134 | 141 |
</_join_words> |
135 |
</1> |
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136 |
<2>$scientificNameAuthorship</2> |
|
137 |
</_join_words> |
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142 |
</2> |
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143 |
</_alt> |
|
138 | 144 |
</2> |
139 |
</_alt> |
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140 |
</2> |
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141 |
</_join_words> |
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142 |
</taxonomicname> |
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143 |
</taxonlabel> |
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144 |
</matched_label_id> |
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145 |
<creationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></creationdate> |
|
146 |
<parent_id> |
|
147 |
<taxonlabel> |
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148 |
<rank>$taxonRank</rank> |
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<taxonverbatim><verbatimrank>$taxonRank</verbatimrank></taxonverbatim> |
|
145 |
</_join_words> |
|
146 |
</taxonomicname> |
|
147 |
</taxonlabel> |
|
148 |
</matched_label_id> |
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149 |
<creationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></creationdate> |
|
150 | 150 |
<parent_id> |
151 | 151 |
<taxonlabel> |
152 |
<rank>cultivar</rank> |
|
152 |
<rank>$taxonRank</rank> |
|
153 |
<taxonverbatim><verbatimrank>$taxonRank</verbatimrank></taxonverbatim> |
|
153 | 154 |
<parent_id> |
154 | 155 |
<taxonlabel> |
155 |
<rank>forma</rank>
|
|
156 |
<rank>cultivar</rank>
|
|
156 | 157 |
<parent_id> |
157 | 158 |
<taxonlabel> |
158 |
<rank>variety</rank>
|
|
159 |
<rank>forma</rank>
|
|
159 | 160 |
<parent_id> |
160 | 161 |
<taxonlabel> |
161 |
<rank>subspecies</rank>
|
|
162 |
<rank>variety</rank>
|
|
162 | 163 |
<parent_id> |
163 | 164 |
<taxonlabel> |
164 |
<rank>species</rank> |
|
165 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
165 |
<rank>subspecies</rank> |
|
166 | 166 |
<parent_id> |
167 | 167 |
<taxonlabel> |
168 |
<rank>genus</rank>
|
|
169 |
<taxonepithet>$genus</taxonepithet>
|
|
168 |
<rank>species</rank>
|
|
169 |
<taxonepithet>$specificEpithet</taxonepithet>
|
|
170 | 170 |
<parent_id> |
171 | 171 |
<taxonlabel> |
172 |
<rank>family</rank>
|
|
173 |
<taxonepithet>$family</taxonepithet>
|
|
172 |
<rank>genus</rank>
|
|
173 |
<taxonepithet>$genus</taxonepithet>
|
|
174 | 174 |
<parent_id> |
175 | 175 |
<taxonlabel> |
176 |
<rank>order</rank> |
|
176 |
<rank>family</rank> |
|
177 |
<taxonepithet>$family</taxonepithet> |
|
177 | 178 |
<parent_id> |
178 | 179 |
<taxonlabel> |
179 |
<rank>class</rank>
|
|
180 |
<rank>order</rank>
|
|
180 | 181 |
<parent_id> |
181 | 182 |
<taxonlabel> |
182 |
<rank>phylum</rank>
|
|
183 |
<rank>class</rank>
|
|
183 | 184 |
<parent_id> |
184 | 185 |
<taxonlabel> |
185 |
<rank>kingdom</rank> |
|
186 |
<taxonepithet>$kingdom</taxonepithet> |
|
186 |
<rank>phylum</rank> |
|
187 |
<parent_id> |
|
188 |
<taxonlabel> |
|
189 |
<rank>kingdom</rank> |
|
190 |
<taxonepithet>$kingdom</taxonepithet> |
|
191 |
</taxonlabel> |
|
192 |
</parent_id> |
|
187 | 193 |
</taxonlabel> |
188 | 194 |
</parent_id> |
189 | 195 |
</taxonlabel> |
... | ... | |
204 | 210 |
</parent_id> |
205 | 211 |
</taxonlabel> |
206 | 212 |
</parent_id> |
213 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
207 | 214 |
</taxonlabel> |
208 | 215 |
</parent_id> |
209 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
210 |
</taxonlabel> |
|
211 |
</parent_id> |
|
212 |
<rank>$taxonRank</rank> |
|
213 |
<taxonomicname> |
|
214 |
<_join_words> |
|
215 |
<1> |
|
216 |
<_taxon_family_require_std> |
|
217 |
<family> |
|
218 |
<_nullIf> |
|
219 |
<null>$scientificName</null> |
|
220 |
<value>$family</value> |
|
221 |
</_nullIf> |
|
222 |
</family> |
|
223 |
</_taxon_family_require_std> |
|
224 |
</1> |
|
225 |
<2> |
|
226 |
<_alt> |
|
227 |
<1>$scientificName</1> |
|
216 |
<rank>$taxonRank</rank> |
|
217 |
<taxonomicname> |
|
218 |
<_join_words> |
|
219 |
<1> |
|
220 |
<_taxon_family_require_std> |
|
221 |
<family> |
|
222 |
<_nullIf> |
|
223 |
<null>$scientificName</null> |
|
224 |
<value>$family</value> |
|
225 |
</_nullIf> |
|
226 |
</family> |
|
227 |
</_taxon_family_require_std> |
|
228 |
</1> |
|
228 | 229 |
<2> |
229 |
<_join_words> |
|
230 |
<1> |
|
230 |
<_alt> |
|
231 |
<1>$scientificName</1> |
|
232 |
<2> |
|
231 | 233 |
<_join_words> |
232 |
<2>$genus</2> |
|
233 |
<3>$specificEpithet</3> |
|
234 |
<5> |
|
234 |
<1> |
|
235 | 235 |
<_join_words> |
236 |
<1> |
|
237 |
<_if name="if has infraspecificEpithet"> |
|
238 |
<cond>$infraspecificEpithet</cond> |
|
239 |
<then>$taxonRank</then> |
|
240 |
</_if> |
|
241 |
</1> |
|
242 |
<2>$infraspecificEpithet</2> |
|
236 |
<2>$genus</2> |
|
237 |
<3>$specificEpithet</3> |
|
238 |
<5> |
|
239 |
<_join_words> |
|
240 |
<1> |
|
241 |
<_if name="if has infraspecificEpithet"> |
|
242 |
<cond>$infraspecificEpithet</cond> |
|
243 |
<then>$taxonRank</then> |
|
244 |
</_if> |
|
245 |
</1> |
|
246 |
<2>$infraspecificEpithet</2> |
|
247 |
</_join_words> |
|
248 |
</5> |
|
243 | 249 |
</_join_words> |
244 |
</5> |
|
250 |
</1> |
|
251 |
<2>$scientificNameAuthorship</2> |
|
245 | 252 |
</_join_words> |
246 |
</1> |
|
247 |
<2>$scientificNameAuthorship</2> |
|
248 |
</_join_words> |
|
253 |
</2> |
|
254 |
</_alt> |
|
249 | 255 |
</2> |
250 |
</_alt> |
|
251 |
</2> |
|
252 |
</_join_words> |
|
253 |
</taxonomicname> |
|
254 |
</taxonlabel> |
|
255 |
</taxonlabel_id> |
|
256 |
<author>$scientificNameAuthorship</author> |
|
257 |
<family>$family</family> |
|
258 |
<genus>$genus</genus> |
|
259 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
260 |
<taxonomicname>$scientificName</taxonomicname> |
|
261 |
<verbatimrank>$taxonRank</verbatimrank> |
|
262 |
</taxonverbatim> |
|
263 |
</taxonverbatim_id> |
|
264 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate> |
|
265 |
<taxonfit>$identificationQualifier</taxonfit> |
|
266 |
</taxondetermination> |
|
267 |
</taxonoccurrence> |
|
268 |
</locationevent> |
|
269 |
<locationnarrative> |
|
270 |
<_merge> |
|
271 |
<1>$locality</1> |
|
272 |
<3> |
|
273 |
<_label> |
|
274 |
<label>habitat</label> |
|
275 |
<value>$habitat</value> |
|
276 |
</_label> |
|
277 |
</3> |
|
278 |
</_merge> |
|
279 |
</locationnarrative> |
|
280 |
<locationplace> |
|
281 |
<place_id> |
|
282 |
<place> |
|
283 |
<coordinates_id> |
|
284 |
<coordinates> |
|
285 |
<coordsaccuracy_m><_noCV><value>$coordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m> |
|
286 |
<latitude_deg> |
|
287 |
<_nullIf> |
|
288 |
<null>0</null> |
|
289 |
<type>float</type> |
|
290 |
<value>$decimalLatitude</value> |
|
291 |
</_nullIf> |
|
292 |
</latitude_deg> |
|
293 |
<longitude_deg> |
|
294 |
<_nullIf> |
|
295 |
<null>0</null> |
|
296 |
<type>float</type> |
|
297 |
<value>$decimalLongitude</value> |
|
298 |
</_nullIf> |
|
299 |
</longitude_deg> |
|
300 |
<verbatimlatitude>$verbatimLatitude</verbatimlatitude> |
|
301 |
<verbatimlongitude>$verbatimLongitude</verbatimlongitude> |
|
302 |
</coordinates> |
|
303 |
</coordinates_id> |
|
304 |
<continent>$continent</continent> |
|
305 |
<country>$country</country> |
|
306 |
<county>$county</county> |
|
307 |
<matched_place_id> |
|
256 |
</_join_words> |
|
257 |
</taxonomicname> |
|
258 |
</taxonlabel> |
|
259 |
</taxonlabel_id> |
|
260 |
<author>$scientificNameAuthorship</author> |
|
261 |
<family>$family</family> |
|
262 |
<genus>$genus</genus> |
|
263 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
264 |
<taxonomicname>$scientificName</taxonomicname> |
|
265 |
<verbatimrank>$taxonRank</verbatimrank> |
|
266 |
</taxonverbatim> |
|
267 |
</taxonverbatim_id> |
|
268 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate> |
|
269 |
<taxonfit>$identificationQualifier</taxonfit> |
|
270 |
</taxondetermination> |
|
271 |
</taxonoccurrence> |
|
272 |
</locationevent> |
|
273 |
<locationnarrative> |
|
274 |
<_merge> |
|
275 |
<1>$locality</1> |
|
276 |
<3> |
|
277 |
<_label> |
|
278 |
<label>habitat</label> |
|
279 |
<value>$habitat</value> |
|
280 |
</_label> |
|
281 |
</3> |
|
282 |
</_merge> |
|
283 |
</locationnarrative> |
|
284 |
<locationplace> |
|
285 |
<place_id> |
|
308 | 286 |
<place> |
309 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
310 | 287 |
<coordinates_id> |
311 | 288 |
<coordinates> |
312 |
<source_id><source><shortname>geoscrub</shortname></source></source_id>
|
|
289 |
<coordsaccuracy_m><_noCV><value>$coordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m>
|
|
313 | 290 |
<latitude_deg> |
314 | 291 |
<_nullIf> |
315 | 292 |
<null>0</null> |
... | ... | |
324 | 301 |
<value>$decimalLongitude</value> |
325 | 302 |
</_nullIf> |
326 | 303 |
</longitude_deg> |
304 |
<verbatimlatitude>$verbatimLatitude</verbatimlatitude> |
|
305 |
<verbatimlongitude>$verbatimLongitude</verbatimlongitude> |
|
327 | 306 |
</coordinates> |
328 | 307 |
</coordinates_id> |
308 |
<continent>$continent</continent> |
|
329 | 309 |
<country>$country</country> |
330 | 310 |
<county>$county</county> |
311 |
<matched_place_id> |
|
312 |
<place> |
|
313 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
314 |
<coordinates_id> |
|
315 |
<coordinates> |
|
316 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
317 |
<latitude_deg> |
|
318 |
<_nullIf> |
|
319 |
<null>0</null> |
|
320 |
<type>float</type> |
|
321 |
<value>$decimalLatitude</value> |
|
322 |
</_nullIf> |
|
323 |
</latitude_deg> |
|
324 |
<longitude_deg> |
|
325 |
<_nullIf> |
|
326 |
<null>0</null> |
|
327 |
<type>float</type> |
|
328 |
<value>$decimalLongitude</value> |
|
329 |
</_nullIf> |
|
330 |
</longitude_deg> |
|
331 |
</coordinates> |
|
332 |
</coordinates_id> |
|
333 |
<country>$country</country> |
|
334 |
<county>$county</county> |
|
335 |
<stateprovince>$stateProvince</stateprovince> |
|
336 |
</place> |
|
337 |
</matched_place_id> |
|
331 | 338 |
<stateprovince>$stateProvince</stateprovince> |
332 | 339 |
</place> |
333 |
</matched_place_id> |
|
334 |
<stateprovince>$stateProvince</stateprovince> |
|
335 |
</place> |
|
336 |
</place_id> |
|
337 |
</locationplace> |
|
338 |
<verbatimelevation>$verbatimElevation</verbatimelevation> |
|
339 |
</location> |
|
340 |
</place_id> |
|
341 |
</locationplace> |
|
342 |
<verbatimelevation>$verbatimElevation</verbatimelevation> |
|
343 |
</location> |
|
344 |
</path> |
|
345 |
</_simplifyPath> |
|
340 | 346 |
</path> |
341 |
</_simplifyPath>
|
|
347 |
</_setDefault>
|
|
342 | 348 |
</VegBIEN> |
343 | 349 |
Inserted 43 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()