Revision 6403
Added by Aaron Marcuse-Kubitza over 11 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 | 2 |
<VegBIEN> |
| 3 |
<_simplifyPath id="-1"> |
|
| 4 |
<next>parent_id</next> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<col>source_id</col> |
|
| 5 |
<value><source><shortname>VASCAN</shortname></source></value> |
|
| 5 | 6 |
<path> |
| 6 |
<location> |
|
| 7 |
<locationevent> |
|
| 8 |
<taxonoccurrence> |
|
| 9 |
<taxondetermination> |
|
| 10 |
<taxonverbatim_id> |
|
| 11 |
<taxonverbatim> |
|
| 12 |
<taxonlabel_id> |
|
| 13 |
<taxonlabel> |
|
| 14 |
<matched_label_id> |
|
| 7 |
<_simplifyPath> |
|
| 8 |
<next>parent_id</next> |
|
| 9 |
<path> |
|
| 10 |
<location> |
|
| 11 |
<locationevent> |
|
| 12 |
<taxonoccurrence> |
|
| 13 |
<taxondetermination> |
|
| 14 |
<taxonverbatim_id> |
|
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<taxonverbatim> |
|
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<taxonlabel_id> |
|
| 15 | 17 |
<taxonlabel> |
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<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 17 |
<taxonomicname> |
|
| 18 |
<_join_words> |
|
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<1> |
|
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<_taxon_family_require_std> |
|
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<family> |
|
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<_nullIf> |
|
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<null>$scientificName</null> |
|
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<value>$family</value> |
|
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</_nullIf> |
|
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</family> |
|
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</_taxon_family_require_std> |
|
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</1> |
|
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<2> |
|
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<_alt> |
|
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<1>$scientificName</1> |
|
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<matched_label_id> |
|
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<taxonlabel> |
|
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<source_id><source><shortname>TNRS</shortname></source></source_id> |
|
| 21 |
<taxonomicname> |
|
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<_join_words> |
|
| 23 |
<1> |
|
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<_taxon_family_require_std> |
|
| 25 |
<family> |
|
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<_nullIf> |
|
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<null>$scientificName</null> |
|
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<value>$family</value> |
|
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</_nullIf> |
|
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</family> |
|
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</_taxon_family_require_std> |
|
| 32 |
</1> |
|
| 32 | 33 |
<2> |
| 33 |
<_join_words> |
|
| 34 |
<1> |
|
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<_alt> |
|
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<1>$scientificName</1> |
|
| 36 |
<2> |
|
| 35 | 37 |
<_join_words> |
| 36 |
<2>$genus</2> |
|
| 37 |
<3>$specificEpithet</3> |
|
| 38 |
<5> |
|
| 38 |
<1> |
|
| 39 | 39 |
<_join_words> |
| 40 |
<1> |
|
| 41 |
<_if name="if has infraspecificEpithet"> |
|
| 42 |
<cond>$infraspecificEpithet</cond> |
|
| 43 |
<then>$taxonRank</then> |
|
| 44 |
</_if> |
|
| 45 |
</1> |
|
| 46 |
<2>$infraspecificEpithet</2> |
|
| 40 |
<2>$genus</2> |
|
| 41 |
<3>$specificEpithet</3> |
|
| 42 |
<5> |
|
| 43 |
<_join_words> |
|
| 44 |
<1> |
|
| 45 |
<_if name="if has infraspecificEpithet"> |
|
| 46 |
<cond>$infraspecificEpithet</cond> |
|
| 47 |
<then>$taxonRank</then> |
|
| 48 |
</_if> |
|
| 49 |
</1> |
|
| 50 |
<2>$infraspecificEpithet</2> |
|
| 51 |
</_join_words> |
|
| 52 |
</5> |
|
| 47 | 53 |
</_join_words> |
| 48 |
</5> |
|
| 54 |
</1> |
|
| 55 |
<2>$scientificNameAuthorship</2> |
|
| 49 | 56 |
</_join_words> |
| 50 |
</1> |
|
| 51 |
<2>$scientificNameAuthorship</2> |
|
| 52 |
</_join_words> |
|
| 57 |
</2> |
|
| 58 |
</_alt> |
|
| 53 | 59 |
</2> |
| 54 |
</_alt> |
|
| 55 |
</2> |
|
| 56 |
</_join_words> |
|
| 57 |
</taxonomicname> |
|
| 58 |
</taxonlabel> |
|
| 59 |
</matched_label_id> |
|
| 60 |
<parent_id> |
|
| 61 |
<taxonlabel> |
|
| 62 |
<rank>$taxonRank</rank> |
|
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<taxonverbatim><verbatimrank>$taxonRank</verbatimrank></taxonverbatim> |
|
| 60 |
</_join_words> |
|
| 61 |
</taxonomicname> |
|
| 62 |
</taxonlabel> |
|
| 63 |
</matched_label_id> |
|
| 64 | 64 |
<parent_id> |
| 65 | 65 |
<taxonlabel> |
| 66 |
<rank>cultivar</rank> |
|
| 66 |
<rank>$taxonRank</rank> |
|
| 67 |
<taxonverbatim><verbatimrank>$taxonRank</verbatimrank></taxonverbatim> |
|
| 67 | 68 |
<parent_id> |
| 68 | 69 |
<taxonlabel> |
| 69 |
<rank>forma</rank>
|
|
| 70 |
<rank>cultivar</rank>
|
|
| 70 | 71 |
<parent_id> |
| 71 | 72 |
<taxonlabel> |
| 72 |
<rank>variety</rank>
|
|
| 73 |
<rank>forma</rank>
|
|
| 73 | 74 |
<parent_id> |
| 74 | 75 |
<taxonlabel> |
| 75 |
<rank>subspecies</rank>
|
|
| 76 |
<rank>variety</rank>
|
|
| 76 | 77 |
<parent_id> |
| 77 | 78 |
<taxonlabel> |
| 78 |
<rank>species</rank> |
|
| 79 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 79 |
<rank>subspecies</rank> |
|
| 80 | 80 |
<parent_id> |
| 81 | 81 |
<taxonlabel> |
| 82 |
<rank>genus</rank>
|
|
| 83 |
<taxonepithet>$genus</taxonepithet>
|
|
| 82 |
<rank>species</rank>
|
|
| 83 |
<taxonepithet>$specificEpithet</taxonepithet>
|
|
| 84 | 84 |
<parent_id> |
| 85 | 85 |
<taxonlabel> |
| 86 |
<rank>family</rank>
|
|
| 87 |
<taxonepithet>$family</taxonepithet>
|
|
| 86 |
<rank>genus</rank>
|
|
| 87 |
<taxonepithet>$genus</taxonepithet>
|
|
| 88 | 88 |
<parent_id> |
| 89 | 89 |
<taxonlabel> |
| 90 |
<rank>order</rank>
|
|
| 91 |
<taxonepithet>$order</taxonepithet>
|
|
| 90 |
<rank>family</rank>
|
|
| 91 |
<taxonepithet>$family</taxonepithet>
|
|
| 92 | 92 |
<parent_id> |
| 93 | 93 |
<taxonlabel> |
| 94 |
<rank>class</rank>
|
|
| 95 |
<taxonepithet>$class</taxonepithet>
|
|
| 94 |
<rank>order</rank>
|
|
| 95 |
<taxonepithet>$order</taxonepithet>
|
|
| 96 | 96 |
<parent_id> |
| 97 | 97 |
<taxonlabel> |
| 98 |
<rank>phylum</rank> |
|
| 98 |
<rank>class</rank> |
|
| 99 |
<taxonepithet>$class</taxonepithet> |
|
| 99 | 100 |
<parent_id> |
| 100 | 101 |
<taxonlabel> |
| 101 |
<rank>kingdom</rank> |
|
| 102 |
<taxonepithet>$kingdom</taxonepithet> |
|
| 102 |
<rank>phylum</rank> |
|
| 103 |
<parent_id> |
|
| 104 |
<taxonlabel> |
|
| 105 |
<rank>kingdom</rank> |
|
| 106 |
<taxonepithet>$kingdom</taxonepithet> |
|
| 107 |
</taxonlabel> |
|
| 108 |
</parent_id> |
|
| 103 | 109 |
</taxonlabel> |
| 104 | 110 |
</parent_id> |
| 105 | 111 |
</taxonlabel> |
| ... | ... | |
| 120 | 126 |
</parent_id> |
| 121 | 127 |
</taxonlabel> |
| 122 | 128 |
</parent_id> |
| 129 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 123 | 130 |
</taxonlabel> |
| 124 | 131 |
</parent_id> |
| 125 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 126 |
</taxonlabel> |
|
| 127 |
</parent_id> |
|
| 128 |
<rank>$taxonRank</rank> |
|
| 129 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 130 |
<taxonomicname> |
|
| 131 |
<_join_words> |
|
| 132 |
<1> |
|
| 133 |
<_taxon_family_require_std> |
|
| 134 |
<family> |
|
| 135 |
<_nullIf> |
|
| 136 |
<null>$scientificName</null> |
|
| 137 |
<value>$family</value> |
|
| 138 |
</_nullIf> |
|
| 139 |
</family> |
|
| 140 |
</_taxon_family_require_std> |
|
| 141 |
</1> |
|
| 142 |
<2> |
|
| 143 |
<_alt> |
|
| 144 |
<1>$scientificName</1> |
|
| 132 |
<rank>$taxonRank</rank> |
|
| 133 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 134 |
<taxonomicname> |
|
| 135 |
<_join_words> |
|
| 136 |
<1> |
|
| 137 |
<_taxon_family_require_std> |
|
| 138 |
<family> |
|
| 139 |
<_nullIf> |
|
| 140 |
<null>$scientificName</null> |
|
| 141 |
<value>$family</value> |
|
| 142 |
</_nullIf> |
|
| 143 |
</family> |
|
| 144 |
</_taxon_family_require_std> |
|
| 145 |
</1> |
|
| 145 | 146 |
<2> |
| 146 |
<_join_words> |
|
| 147 |
<1> |
|
| 147 |
<_alt> |
|
| 148 |
<1>$scientificName</1> |
|
| 149 |
<2> |
|
| 148 | 150 |
<_join_words> |
| 149 |
<2>$genus</2> |
|
| 150 |
<3>$specificEpithet</3> |
|
| 151 |
<5> |
|
| 151 |
<1> |
|
| 152 | 152 |
<_join_words> |
| 153 |
<1> |
|
| 154 |
<_if name="if has infraspecificEpithet"> |
|
| 155 |
<cond>$infraspecificEpithet</cond> |
|
| 156 |
<then>$taxonRank</then> |
|
| 157 |
</_if> |
|
| 158 |
</1> |
|
| 159 |
<2>$infraspecificEpithet</2> |
|
| 153 |
<2>$genus</2> |
|
| 154 |
<3>$specificEpithet</3> |
|
| 155 |
<5> |
|
| 156 |
<_join_words> |
|
| 157 |
<1> |
|
| 158 |
<_if name="if has infraspecificEpithet"> |
|
| 159 |
<cond>$infraspecificEpithet</cond> |
|
| 160 |
<then>$taxonRank</then> |
|
| 161 |
</_if> |
|
| 162 |
</1> |
|
| 163 |
<2>$infraspecificEpithet</2> |
|
| 164 |
</_join_words> |
|
| 165 |
</5> |
|
| 160 | 166 |
</_join_words> |
| 161 |
</5> |
|
| 167 |
</1> |
|
| 168 |
<2>$scientificNameAuthorship</2> |
|
| 162 | 169 |
</_join_words> |
| 163 |
</1> |
|
| 164 |
<2>$scientificNameAuthorship</2> |
|
| 165 |
</_join_words> |
|
| 170 |
</2> |
|
| 171 |
</_alt> |
|
| 166 | 172 |
</2> |
| 167 |
</_alt>
|
|
| 168 |
</2>
|
|
| 169 |
</_join_words>
|
|
| 170 |
</taxonomicname>
|
|
| 171 |
<taxonstatus>$taxonomicStatus</taxonstatus>
|
|
| 172 |
</taxonlabel>
|
|
| 173 |
</taxonlabel_id>
|
|
| 174 |
<author>$scientificNameAuthorship</author>
|
|
| 175 |
<family>$family</family>
|
|
| 176 |
<genus>$genus</genus>
|
|
| 177 |
<specific_epithet>$specificEpithet</specific_epithet>
|
|
| 178 |
<taxonomicname>$scientificName</taxonomicname>
|
|
| 179 |
<verbatimrank>$taxonRank</verbatimrank>
|
|
| 180 |
</taxonverbatim>
|
|
| 181 |
</taxonverbatim_id>
|
|
| 182 |
</taxondetermination>
|
|
| 183 |
</taxonoccurrence>
|
|
| 184 |
</locationevent>
|
|
| 185 |
</location>
|
|
| 173 |
</_join_words>
|
|
| 174 |
</taxonomicname>
|
|
| 175 |
<taxonstatus>$taxonomicStatus</taxonstatus>
|
|
| 176 |
</taxonlabel>
|
|
| 177 |
</taxonlabel_id>
|
|
| 178 |
<author>$scientificNameAuthorship</author>
|
|
| 179 |
<family>$family</family>
|
|
| 180 |
<genus>$genus</genus>
|
|
| 181 |
<specific_epithet>$specificEpithet</specific_epithet>
|
|
| 182 |
<taxonomicname>$scientificName</taxonomicname>
|
|
| 183 |
<verbatimrank>$taxonRank</verbatimrank>
|
|
| 184 |
</taxonverbatim>
|
|
| 185 |
</taxonverbatim_id>
|
|
| 186 |
</taxondetermination>
|
|
| 187 |
</taxonoccurrence>
|
|
| 188 |
</locationevent>
|
|
| 189 |
</location>
|
|
| 190 |
</path>
|
|
| 191 |
</_simplifyPath>
|
|
| 186 | 192 |
</path> |
| 187 |
</_simplifyPath>
|
|
| 193 |
</_setDefault>
|
|
| 188 | 194 |
</VegBIEN> |
| 189 | 195 |
Inserted 13 new rows into database |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Set the source_id col_default to the datasource name using the new _setDefault() built-in function and _env()