-- Name: analytical_aggregate; Type: TABLE; Schema: public; Owner: -; Tablespace: 

--

CREATE TABLE analytical_aggregate (

    "institutionCode" text NOT NULL,

    country text,

    "stateProvince" text,

    county text,

    "decimalLatitude" double precision,

    "decimalLongitude" double precision,

    "coordinateUncertaintyInMeters" double precision,

    geovalid boolean,

    "isNewWorld" boolean,

    "distanceToCountry_km" double precision,

    "distanceToStateProvince_km" double precision,

    "plotName" text NOT NULL,

    "elevationInMeters" double precision,

    "plotArea_ha" double precision,

    "samplingProtocol" text,

    "dateCollected" date NOT NULL,

    "higherPlantGroup" higher_plant_group,

    family text,

    genus text,

    "speciesBinomial" text,

    "scientificName" text,

    "scientificNameAuthorship" text,

    "scientificNameWithMorphospecies" text NOT NULL,

    threatened boolean,

    "identifiedBy" text,

    "growthForm" growthform,

    cultivated boolean,

    "cultivatedBasis" text,

    "coverPercent" double precision,

    "individualCount" bigint,

    "individualCount_1cm_or_more" bigint,

    "individualCount_2_5cm_or_more" bigint,

    "individualCount_10cm_or_more" bigint

);

--

-- Name: analytical_stem; Type: TABLE; Schema: public; Owner: -; Tablespace: 

--

CREATE TABLE analytical_stem (

    "institutionCode" text NOT NULL,

    country text,

    "stateProvince" text,

    county text,

    "decimalLatitude" double precision,

    "decimalLongitude" double precision,

    "coordinateUncertaintyInMeters" double precision,

    geovalid boolean,

    "isNewWorld" boolean,

    "distanceToCountry_km" double precision,

    "distanceToStateProvince_km" double precision,

    "plotName" text NOT NULL,

    "elevationInMeters" double precision,

    "plotArea_ha" double precision,

    "samplingProtocol" text,

    "dateCollected" date NOT NULL,

    "higherPlantGroup" higher_plant_group,

    family text,

    genus text,

    "speciesBinomial" text,

    "scientificName" text,

    "scientificNameAuthorship" text,

    "scientificNameWithMorphospecies" text NOT NULL,

    threatened boolean,

    "identifiedBy" text,

    "growthForm" growthform,

    cultivated boolean,

    "cultivatedBasis" text,

    "coverPercent" double precision,

    "diameterBreastHeight_cm" double precision,

    height_m double precision,

    tag text,

    "organismX_m" double precision,

    "organismY_m" double precision,

    "recordedBy" text,

    "recordNumber" text NOT NULL

);

--

    SELECT source.shortname AS "institutionCode", canon_place.country, canon_place.stateprovince AS "stateProvince", datasource_place.county, coordinates.latitude_deg AS "decimalLatitude", coordinates.longitude_deg AS "decimalLongitude", coordinates.coordsaccuracy_m AS "coordinateUncertaintyInMeters", canon_place.geovalid, "newWorldCountries"."isNewWorld", _m_to_km(canon_place.distance_to_country_m) AS "distanceToCountry_km", _m_to_km(canon_place.distance_to_state_m) AS "distanceToStateProvince_km", COALESCE(location.sourceaccessioncode, location.authorlocationcode) AS "plotName", location.elevation_m AS "elevationInMeters", _m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", COALESCE(locationevent.obsstartdate, aggregateoccurrence.collectiondate) AS "dateCollected", family_higher_plant_group.higher_plant_group AS "higherPlantGroup", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.specific_epithet) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.taxonname) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[COALESCE(accepted_taxonverbatim.genus, accepted_taxonverbatim.family), COALESCE(accepted_taxonverbatim.specific_epithet, parsed_taxonverbatim.morphospecies)], ' '::text), ''::text) AS "scientificNameWithMorphospecies", (threatened_taxonlabel.taxonlabel_id IS NOT NULL) AS threatened, NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", taxonoccurrence.growthform AS "growthForm", ((cultivated_family_locations.country IS NOT NULL) OR _or(taxonoccurrence.iscultivated, location.iscultivated)) AS cultivated, CASE WHEN (taxonoccurrence.iscultivated IS NOT NULL) THEN taxonoccurrence.cultivatedbasis WHEN (location.iscultivated IS NOT NULL) THEN NULL::text ELSE NULL::text END AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", _m_to_cm(stemobservation.diameterbreastheight_m) AS "diameterBreastHeight_cm", stemobservation.height_m, stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", collector.fullname AS "recordedBy", NULLIF(array_to_string(ARRAY[taxonoccurrence.sourceaccessioncode, taxonoccurrence.authortaxoncode, plantobservation.sourceaccessioncode, plantobservation.collectionnumber, stemobservation.sourceaccessioncode, stemobservation.authorstemcode, stemobservation.tag], '; '::text), ''::text) AS "recordNumber" FROM (((((((((((((((((((((((((source JOIN location USING (source_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN place datasource_place USING (place_id)) LEFT JOIN place canon_place ON ((canon_place.place_id = datasource_place.canon_place_id))) LEFT JOIN coordinates ON ((coordinates.coordinates_id = canon_place.coordinates_id))) LEFT JOIN "newWorld".iso_code_gadm ON ((iso_code_gadm."GADM country" = canon_place.country))) LEFT JOIN "newWorld"."newWorldCountries" ON ((("newWorldCountries"."isoCode")::text = iso_code_gadm."2-digit iso code"))) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) LEFT JOIN party collector ON ((collector.party_id = taxonoccurrence.collector_id))) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim datasource_taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) LEFT JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) LEFT JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN threatened_taxonlabel ON ((threatened_taxonlabel.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN family_higher_plant_group ON ((family_higher_plant_group.family = accepted_taxonverbatim.family))) LEFT JOIN cultivated_family_locations ON (((cultivated_family_locations.family = accepted_taxonverbatim.family) AND (cultivated_family_locations.country = canon_place.country)))) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) WHERE (taxondetermination.iscurrent AND (COALESCE(locationevent.obsstartdate, aggregateoccurrence.collectiondate) IS NOT NULL));

-- Name: analytical_stem; Type: ACL; Schema: public; Owner: -

--

REVOKE ALL ON TABLE analytical_stem FROM PUBLIC;

REVOKE ALL ON TABLE analytical_stem FROM bien;

GRANT ALL ON TABLE analytical_stem TO bien;

GRANT SELECT ON TABLE analytical_stem TO bien_read;

--