Revision 70
Added by Aaron Marcuse-Kubitza about 13 years ago
| ch_map_root | ||
|---|---|---|
| 25 | 25 |
reader = csv.reader(sys.stdin) |
| 26 | 26 |
writer = csv.writer(sys.stdout) |
| 27 | 27 |
cols = reader.next() |
| 28 |
for i in range(len(configs)): |
|
| 28 |
for i in xrange(len(configs)):
|
|
| 29 | 29 |
config = configs[i] |
| 30 | 30 |
config['root'] = cols[i] |
| 31 | 31 |
label = cols[i].partition('/')[0]
|
| ... | ... | |
| 34 | 34 |
cols[i] = label+config['out_root'] |
| 35 | 35 |
writer.writerow(cols) |
| 36 | 36 |
for row in reader: |
| 37 |
for i in range(len(configs)): row[i] = configs[i]['root']+row[i] |
|
| 37 |
for i in xrange(len(configs)): row[i] = configs[i]['root']+row[i]
|
|
| 38 | 38 |
if row[0].startswith(configs[0]['prefix']): |
| 39 |
assert row[1].startswith(configs[1]['prefix']) |
|
| 40 |
for i in range(len(configs)): |
|
| 39 |
if not row[1].startswith(configs[1]['prefix']): |
|
| 40 |
raise SystemExit('Map error: Root "'+configs[1]['prefix']
|
|
| 41 |
+'" is not contained in output mapping: '+row[1]) |
|
| 42 |
for i in xrange(len(configs)): |
|
| 41 | 43 |
row[i] = row[i][configs[i]['prefix_len']:] |
| 42 | 44 |
writer.writerow(row) |
| 43 | 45 |
|
Also available in: Unified diff
Finished VegX-VegBank mapping and created VegBank joins of mappings to VegX