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Revision 72

Fixed ch_map_root to support subpaths which follow the root by -> rather than /. Changed spreadsheet syntax to have : between label and root.

View differences:

SALVIAS-VegBank.organisms.csv
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SALVIAS,VegBank/taxonObservation/
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OBSERVATION_ID,taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/museumAccessionNumber
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plot_code,*_ID/observation/*_ID/plot/PARENT_ID->/*_ID/observation/*_ID/plot/authorPlotCode
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census_no,"taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=censusNo]]/definedValue"
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census_date,*_ID/observation/obsStartDate
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subplot,"*_ID/observation/{*_ID/plot/authorPlotCode,authorObsCode}"
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individual_code,"taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=individualCode]]/definedValue"
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tag1,taxonImportance/stemCount/stemLocation/stemCode
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tag2,taxonImportance/stemCount/stemLocation/stemCode
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x_position,taxonImportance/stemCount/stemLocation/stemXPosition
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y_position,taxonImportance/stemCount/stemLocation/stemYPosition
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voucher_string,taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collectionNumber
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coll_number,taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collectionNumber
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coll_lastname,taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collector_ID->/party/surName
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coll_firstname,taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collector_ID->/party/givenName
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det_type,"taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=determinationType]]/definedValue"
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family,taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Family])/*_ID/*/plantName
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genus,taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Genus])/*_ID/*/plantName
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specific_epithet,taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Species])/*_ID/*/plantName
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specific_authority,"taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Species])/*_ID/plantName/reference_ID->/referenceParty/{givenName,surname}"
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infra_rank_1,taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Subspecies])/*_ID/*/plantName/rank
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infra_ep_1,taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Subspecies])/*_ID/*/plantName/epithet
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cf_aff,"taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=cfAff]]/definedValue"
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habit,"taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=habit]]/definedValue"
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no_of_individuals,taxonImportance/*/stemCount
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cover_percent,taxonImportance/cover
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intercept_cm,"taxonImportance/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonImportance,userDefinedName=interceptCm]]/definedValue"
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height_m,taxonImportance/stemCount/stemHeight
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ht_first_branch_m,"taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=heightFirstBranchM]]/definedValue"
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stem_tag1,taxonImportance/stemCount/stemLocation/stemCode
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stem_tag2,taxonImportance/stemCount/stemLocation/stemCode
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stem_dbh,taxonImportance/stemCount/stemDiameter
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basal_diam,"taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemBasalDiameter]]/definedValue"
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stem_height_m,taxonImportance/stemCount/stemHeight
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stem_height_first_branch_m,"taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemHeightFirstBranchM]]/definedValue"
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stem_canopy_form,"taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemCanopyForm]]/definedValue"
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stem_canopy_position,"taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemCanopyPosition]]/definedValue"
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stem_liana_infestation,"taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemLianaInfestation]]/definedValue"
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notes,taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/notes
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SALVIAS,VegBank:/taxonObservation
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OBSERVATION_ID,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/museumAccessionNumber
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plot_code,/*_ID/observation/*_ID/plot/PARENT_ID->/*_ID/observation/*_ID/plot/authorPlotCode
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census_no,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=censusNo]]/definedValue"
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census_date,/*_ID/observation/obsStartDate
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subplot,"/*_ID/observation/{*_ID/plot/authorPlotCode,authorObsCode}"
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individual_code,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=individualCode]]/definedValue"
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tag1,/taxonImportance/stemCount/stemLocation/stemCode
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tag2,/taxonImportance/stemCount/stemLocation/stemCode
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x_position,/taxonImportance/stemCount/stemLocation/stemXPosition
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y_position,/taxonImportance/stemCount/stemLocation/stemYPosition
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voucher_string,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collectionNumber
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coll_number,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collectionNumber
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coll_lastname,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collector_ID->/party/surName
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coll_firstname,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/collector_ID->/party/givenName
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det_type,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=determinationType]]/definedValue"
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family,/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Family])/*_ID/*/plantName
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genus,/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Genus])/*_ID/*/plantName
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specific_epithet,/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Species])/*_ID/*/plantName
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specific_authority,"/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Species])/*_ID/plantName/reference_ID->/referenceParty/{givenName,surname}"
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infra_rank_1,/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Subspecies])/*_ID/*/plantName/rank
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infra_ep_1,/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Subspecies])/*_ID/*/plantName/epithet
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cf_aff,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=cfAff]]/definedValue"
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habit,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonInterpretation,userDefinedName=habit]]/definedValue"
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no_of_individuals,/taxonImportance/*/stemCount
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cover_percent,/taxonImportance/cover
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intercept_cm,"/taxonImportance/definedValue[@fkey=tableRecord_ID,userDefined[tableName=taxonImportance,userDefinedName=interceptCm]]/definedValue"
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height_m,/taxonImportance/stemCount/stemHeight
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ht_first_branch_m,"/taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=heightFirstBranchM]]/definedValue"
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stem_tag1,/taxonImportance/stemCount/stemLocation/stemCode
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stem_tag2,/taxonImportance/stemCount/stemLocation/stemCode
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stem_dbh,/taxonImportance/stemCount/stemDiameter
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basal_diam,"/taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemBasalDiameter]]/definedValue"
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stem_height_m,/taxonImportance/stemCount/stemHeight
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stem_height_first_branch_m,"/taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemHeightFirstBranchM]]/definedValue"
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stem_canopy_form,"/taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemCanopyForm]]/definedValue"
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stem_canopy_position,"/taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemCanopyPosition]]/definedValue"
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stem_liana_infestation,"/taxonImportance/stemCount/stemLocation/definedValue[@fkey=tableRecord_ID,userDefined[tableName=stemLocation,userDefinedName=stemLianaInfestation]]/definedValue"
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notes,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/notes

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