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Revision 7201

*/new_terms.csv, */unmapped_terms.csv: Regenerated using `make missing_mappings`

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new_terms.csv
10 10
census_date,eventDate,,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
11 11
census_no,censusNumber,,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
12 12
cf_aff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
13
clay_percent,clay,"/_units:[default=""%"",to=]/value",
14
coll_firstname,recordedBy.givenName,,Brad: See comment above
15
coll_lastname,recordedBy.surName,,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
16
coll_number,catalogNumber,/_alt/1,Brad: Map instead as for voucher_string
13
coll_firstname,recordedBy_givenName,,Brad: See comment above
14
coll_lastname,recordedBy_surName,,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
15
coll_number,recordNumber,/_alt/1,Brad: Map instead as for voucher_string
17 16
date_finish,endDate,,
18 17
date_start,startDate,,
19 18
det_type,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
20 19
elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
21 20
elev_max_m,maximumElevationInMeters,,
22 21
elev_min_m,minimumElevationInMeters,,
23
height_m,height,/_alt/2,
24 22
holdridge_life_zone,communityID,,
25 23
ht_first_branch_m,heightFirstBranch,,
26
individual_code,recordNumber,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
27 24
infra_ep_1,infraspecificEpithet,,
28 25
infra_rank_1,taxonRank,,
29 26
lat_decimal,decimalLatitude,,
......
32 29
long_decimal,decimalLongitude,,
33 30
major_geo,continent,,
34 31
no_of_individuals,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
35
organic_percent,organic,"/_units:[default=""%"",to=]/value",
36
orig_family,verbatimFamily,,Brad: OMIT
37
orig_species,verbatimSpecificEpithet,,Brad: OMIT
38
plot_code,plotName,,
39
plot_code,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
32
orig_family,originalFamily,,Brad: OMIT
33
orig_species,originalSpecificEpithet,,Brad: OMIT
34
plot_code,locationName,,
35
plot_code,locationName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
40 36
plot_methodology,samplingProtocol,,
41 37
pol1,stateProvince,,Brad: No; pol1=stateProvince
42 38
pol2,county,,Brad: No pol2=countyParish
43 39
precip_mm,precipitation,,
44 40
project,projectName,,
45
sand_percent,sand,"/_units:[default=""%"",to=]/value",
46
silt_percent,silt,"/_units:[default=""%"",to=]/value",
47
soil_C,carbon,"/_units:[default=""%"",to=]/value",
48
soil_Ca,calcium,"/_units:[default=""%"",to=]/value",
49
soil_K,potassium,"/_units:[default=""%"",to=]/value",
50
soil_Mg,magnesium,"/_units:[default=""%"",to=]/value",
51
soil_N,nitrogen,"/_units:[default=""%"",to=]/value",
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soil_Na,sodium,"/_units:[default=""%"",to=]/value",
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soil_P,phosphorus,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
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soil_acidity,acidity,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
55
soil_base,baseSaturation,"/_units:[default=""%"",to=]/value",
56
soil_cation_cap,cationExchangeCapacity,,
41
soil_C,carbon_percent,,Assuming units are % based on the range of values
42
soil_Ca,calcium_percent,,Assuming units are % based on the range of values
43
soil_K,potassium_percent,,Assuming units are % based on the range of values
44
soil_Mg,magnesium_percent,,Assuming units are % based on the range of values
45
soil_N,nitrogen_percent,,Assuming units are % based on the range of values
46
soil_Na,sodium_percent,,Assuming units are % based on the range of values
47
soil_P,phosphorus_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
48
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
49
soil_base,baseSaturation_percent,,Assuming units are % based on the range of values
50
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
57 51
soil_conductivity,conductivity,,
58 52
soil_texture,texture,,
59 53
specific_authority,scientificNameAuthorship,,Brad: This is the author of the scientificName.
......
61 55
stem_canopy_position,canopyPosition,,
62 56
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
63 57
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
64
stem_height_m,height,/_alt/1,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
58
stem_height_m,height_m,/_alt/1,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."
65 59
stem_liana_infestation,lianaInfestation,,
66 60
stem_tag1,tag,/_alt/1/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
67 61
stem_tag2,tag,/_alt/1/_alt/1,The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: see above
68 62
tag1,tag,/_alt/2/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
69 63
tag2,tag,/_alt/2/_alt/1,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
70 64
temp_c,temperature,,
71
voucher_string,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
72
x_position,organismX,,"Brad: These are important, fundamental values of many tree plots"
73
y_position,organismY,,Brad: See comment above for x_position
65
voucher_string,recordNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
66
x_position,organismX_m,,"""x coordinate in meters"" (x_position definition at <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: These are important, fundamental values of many tree plots"
67
y_position,organismY_m,,"""y coordinate in meters"" (y_position definition at <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: See comment above for x_position"

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