-----

-----"

1ha Plot Number,locationName,,

1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"

1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"

AccessCode,accessRights,"/_map:[1=private,2=""metadata only"",3=public]/value","3 plots contain 3 in this field and ""del"" in tmp_del"

Addcoll,recordedBy,/_join/2,

AgeClass,lifeStage,,

Altitude,elevationInMeters,,Altitude Units is always m

Area,plotArea_m2,,Area Units is always m

AuthorOfScientificName,scientificNameAuthorship,,

BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is"

Barcode,catalogNumber,,

CatalogNO,catalogNumber,,

CatalogNumberNumeric,catalogNumber,/_alt/1,

CatalogSeriesPrefix,institutionCode,/_alt/1,

CollectionDate,dateCollected,,

CollectionDate,eventDate,,

CollectionGUID,collectionID,,

Collmm,monthCollected,,

Collyy,yearCollected,,

CoordinatePrecision,coordinateUncertaintyInMeters,,"Usage inconsistent with DwC definition, which only allows degrees. Assuming units based on the range and precision of values."

Country_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

CurrentScientificName,taxonName,,

CurrentScientificNameWithAuthor,scientificName,,

Datum,verbatimCoordinates,/_join/1,

Description,fieldNotes,,

DetType,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."

Detby,identifiedBy,,

Detyy,yearIdentified,,

Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"

Diameter,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"

Diameter,diameterBreastHeight_cm,,Units is always cm

Ecology,habitat,,

Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

FROM ""REMIB"".""Specimen""

FROM ""SALVIAS"".organisms

FROM ""SALVIAS-CSV"".organisms

FROM ""UNCC"".""Specimen""

GBIFFamilyOriginal,originalFamily,,

GBIFGenusOriginal,originalGenus,,

GROUP BY ""PLOT_ID"", subplot

GROUP BY ""PlotID"", ""Line""

GROUP BY acronym, accession_number

GROUP BY herbarium, accession

Gazetteer,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/1",

GenBankNum,associatedSequences,"/_label[label=""GenBank""]/value",

GeorefMethod,georeferenceProtocol,,

HAVING count(*) > 1

HAVING count(DISTINCT census_date) > 1

IdentificationModifier,identificationQualifier,,

Identifier,tag,,

Ind,individualCode,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."

InstitutionCD,institutionCode,,

Item ID,individualID,,

Item Obs ID,individualObservationID,,

LastDateModified,modified,,

LatLongComments,georeferenceRemarks,,

LatestDateCollected,dateCollected,,

Latitude1,decimalLatitude,,

Line,subplot,,

Loc_AltE,verbatimLongitude,,

Loc_AltN,verbatimLatitude,,

Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"

Locnotes,verbatimLocality,/_join/2,

Long,decimalLongitude,,

LongDec,decimalLongitude,,

Longitude1,decimalLongitude,,

MajorGeo,continent,,

MaximumElevationInMeter,maximumElevationInMeters,,

MeasDay,dayCollected,,

MeasMon,monthCollected,,

MeasYear,yearCollected,,

MeasureID,individualID,,

Method,OMIT,,"Just contains ""Derived"", for 357 rows"

MethodCode,OMIT,,Not globally unique after lookup_MethodCode_Description is combined with PlotMethod

MinimumElevationInMeter,minimumElevationInMeters,,

Name,locationName,,

Names of Collectors,recordedBy,,

Newgazett,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/2",Only used in 1 row

NoInd,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."

NoInd,stemCount,,

Number,recordNumber,,

OBSERVATION_ID,eventID,,

OBSERVATION_ID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."

Observation Date,eventDate,,

OrigFamily,originalFamily,,Brad: OMIT

OrigGenus,originalGenus,,

OrigSpecies,originalSpecificEpithet,,Brad: OMIT

PlotCD,locationID,,

PlotCode,locationName,,

PlotID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

PlotMethod,samplingProtocol,,

PlotObsID,individualID,,

PlotObsID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."

PolDiv1,stateProvince,,Brad: No; pol1=stateProvince

Precip,precipitation,,

Precision,coordinateUncertaintyInMeters,,Units is always m

PrimOwnerID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

Project Abbreviation,projectName,,

RelatedCatalogedItems,relatedResourceID,/_alt/2,Used only when OtherCatalogNumbers is NULL

SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count

SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count

SELECT acronym, accession_number, count(*)

STEMLOCATION_ID,stemID,,

SciName,taxonName,,

ScientificNameOriginal,originalTaxonName,,

Site Name,projectName,,

SiteCode,locationName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)

SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"

Slope,slopeGradient,,

SourceVoucher,recordNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."

Spatial Method,OMIT,,"Just contains ""Derived"", for 14927 rows"

Species Code,authorTaxonCode,/_alt/2,

SpeciesAuthority,scientificNameAuthorship,,

SpecimenPK,occurrenceID,,

Stop Date,projectEndDate,,

Subplot Number,subplot,,

Substrate,locality,"/_join/2/_label[label=""substrate""]/value",

Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",

Taxon Obs Note,taxonRemarks,,

Temp,temperature,,

TimeCollected,eventTime,,

Tree Number,tag,,

TreeTag,tag,,

Trunk,authorStemCode,,

UniqueNYInternalRecordNumber,OMIT,,"Globally unique when provided, but omitted to avoid confusion since this is an internal-only ID"

Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",

Verbatim Code,authorTaxonCode,/_alt/1,

VerbatimCollectingDate,dateCollected,/_alt/0,

WHERE ""Line"" IS NOT NULL AND census_date IS NOT NULL

WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""

WHERE subplot IS NOT NULL AND census_date IS NOT NULL

XEast Long,verbatimCoordinates,"/_join/2/_label[label=""x""]/value",

YNorth Lat,verbatimCoordinates,"/_join/3/_label[label=""y""]/value",

[1] Using the following query:

accession,occurrenceID,,"Globally unique, although occasionally duplicated. [1]

accession_number,catalogNumber,,"Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]

acronym,institutionCode,,

darwin:Collector,recordedBy,,

darwin:CollectorNumber,recordNumber,,

darwin:ContinentOcean,continent,,

darwin:Country,country,,

darwin:County,county,,

darwin:DateLastModified,modified,,

darwin:DayCollected,dayCollected,,

darwin:DayIdentified,dayIdentified,,

darwin:Family,family,,

darwin:Genus,genus,,

darwin:IdentifiedBy,identifiedBy,,

darwin:IndividualCount,individualCount,,

elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

elev_max_m,maximumElevationInMeters,,

elev_min_m,minimumElevationInMeters,,

exchangeCapacity,cationExchangeCapacity_cmol_kg,,

exchangecapacity,cationExchangeCapacity_cmol_kg,,

fam_status,OMIT,,Brad: OMIT. This will be determined later by using TNRS.

obsstartdate,startDate,,

orig_family,originalFamily,,Brad: OMIT

orig_species,originalSpecificEpithet,,Brad: OMIT

parent_id,parentLocationID,,

plantNameWithAuthority,scientificName,,

plantname,taxonName,,