Project

General

Profile

« Previous | Next » 

Revision 7346

schemas/vegbien.sql: analytical_stem_view: Added georeferenceProtocol, which is set to 'county centroid' when county centroid coordinates are used

View differences:

vegbien.sql
1628 1628
    "decimalLongitude" double precision,
1629 1629
    "coordinateUncertaintyInMeters" double precision,
1630 1630
    "coordinateSource" coordinatesource,
1631
    "georeferenceProtocol" text,
1631 1632
    geovalid integer,
1632 1633
    "isNewWorld" integer,
1633 1634
    "projectID" text,
......
2481 2482
--
2482 2483

  
2483 2484
CREATE VIEW analytical_stem_view AS
2484
    SELECT source.shortname AS datasource, sourcelist.name AS "institutionCode", specimenreplicate.collectioncode_dwc AS "collectionCode", specimenreplicate.catalognumber_dwc AS "catalogNumber", specimenreplicate.sourceaccessioncode AS "occurrenceID", canon_place.country, canon_place.stateprovince AS "stateProvince", datasource_place.county, CASE WHEN canon_place.geovalid THEN coordinates.latitude_deg ELSE county_centroids.latitude END AS "decimalLatitude", CASE WHEN canon_place.geovalid THEN coordinates.longitude_deg ELSE county_centroids.longitude END AS "decimalLongitude", CASE WHEN canon_place.geovalid THEN coordinates.coordsaccuracy_m ELSE _km_to_m(county_centroids.error_km) END AS "coordinateUncertaintyInMeters", CASE WHEN canon_place.geovalid THEN 'source data'::coordinatesource WHEN (county_centroids.row_num IS NOT NULL) THEN 'georeferencing'::coordinatesource ELSE NULL::coordinatesource END AS "coordinateSource", (canon_place.geovalid)::integer AS geovalid, ("newWorldCountries"."isNewWorld")::integer AS "isNewWorld", COALESCE(project.sourceaccessioncode, project.projectname) AS "projectID", COALESCE(location.sourceaccessioncode, NULLIF(array_to_string(ARRAY[COALESCE(parent_location.sourceaccessioncode, parent_location.authorlocationcode), location.authorlocationcode], '; '::text), ''::text)) AS "locationID", COALESCE(parent_location.authorlocationcode, location.authorlocationcode) AS "locationName", CASE WHEN (parent_location.location_id IS NOT NULL) THEN location.authorlocationcode ELSE NULL::text END AS subplot, plantobservation.authorplantcode AS "individualCode", COALESCE(location.elevation_m, parent_location.elevation_m) AS "elevationInMeters", _m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", COALESCE(locationevent.obsstartdate, parent_event.obsstartdate, aggregateoccurrence.collectiondate) AS "dateCollected", family_higher_plant_group.higher_plant_group AS "higherPlantGroup", taxonverbatim.family, taxonverbatim.genus, ((taxonverbatim.genus || ' '::text) || taxonverbatim.specific_epithet) AS "speciesBinomial", taxonverbatim.taxonname AS "taxonName", taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[COALESCE(taxonverbatim.genus, taxonverbatim.family), COALESCE(taxonverbatim.specific_epithet, taxonverbatim.morphospecies)], ' '::text), ''::text) AS "scientificNameWithMorphospecies", ((threatened_taxonlabel.taxonlabel_id IS NOT NULL))::integer AS threatened, identifiedby.fullname AS "identifiedBy", taxonoccurrence.growthform AS "growthForm", (((cultivated_family_locations.country IS NOT NULL) OR _or(taxonoccurrence.iscultivated, location.iscultivated)))::integer AS cultivated, CASE WHEN (taxonoccurrence.iscultivated IS NOT NULL) THEN taxonoccurrence.cultivatedbasis WHEN (location.iscultivated IS NOT NULL) THEN NULL::text ELSE NULL::text END AS "cultivatedBasis", collector.fullname AS "recordedBy", plantobservation.authorplantcode AS "recordNumber", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", _m_to_cm(stemobservation.diameterbreastheight_m) AS "diameterBreastHeight_cm", stemobservation.height_m, stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", taxonoccurrence.sourceaccessioncode AS "taxonOccurrenceID", taxonoccurrence.authortaxoncode AS "authorTaxonCode", plantobservation.sourceaccessioncode AS "individualObservationID", stemobservation.authorstemcode AS "authorStemCode" FROM (((((((((((((((((((((((((((source JOIN location USING (source_id)) LEFT JOIN locationevent USING (location_id)) LEFT JOIN location parent_location ON ((parent_location.location_id = location.parent_id))) LEFT JOIN locationplace ON ((locationplace.location_id = COALESCE(parent_location.location_id, location.location_id)))) LEFT JOIN place datasource_place USING (place_id)) LEFT JOIN place canon_place ON ((canon_place.place_id = datasource_place.canon_place_id))) LEFT JOIN coordinates ON ((coordinates.coordinates_id = canon_place.coordinates_id))) LEFT JOIN "newWorld".iso_code_gadm ON ((iso_code_gadm."GADM country" = canon_place.country))) LEFT JOIN "newWorld"."newWorldCountries" ON (("newWorldCountries"."isoCode" = iso_code_gadm."2-digit iso code"))) LEFT JOIN geoscrub.county_centroids ON ((((canon_place.country = 'United States'::text) AND (county_centroids.state = canon_place.stateprovince)) AND (county_centroids.county = canon_place.county)))) LEFT JOIN taxonoccurrence USING (locationevent_id)) LEFT JOIN locationevent parent_event ON ((parent_event.locationevent_id = locationevent.parent_id))) LEFT JOIN project ON ((project.project_id = COALESCE(locationevent.project_id, parent_event.project_id)))) LEFT JOIN method ON ((method.method_id = COALESCE(locationevent.method_id, parent_event.method_id)))) LEFT JOIN party collector ON ((collector.party_id = taxonoccurrence.collector_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) LEFT JOIN sourcelist ON ((sourcelist.sourcelist_id = specimenreplicate.institution_id))) LEFT JOIN taxondetermination ON (((taxondetermination.taxonoccurrence_id = taxonoccurrence.taxonoccurrence_id) AND taxondetermination.iscurrent))) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) LEFT JOIN taxonverbatim USING (taxonverbatim_id)) LEFT JOIN taxonlabel USING (taxonlabel_id)) LEFT JOIN family_higher_plant_group ON ((family_higher_plant_group.family = taxonverbatim.family))) LEFT JOIN cultivated_family_locations ON (((cultivated_family_locations.family = taxonverbatim.family) AND (cultivated_family_locations.country = canon_place.country)))) LEFT JOIN threatened_taxonlabel ON ((threatened_taxonlabel.taxonlabel_id = taxonlabel.taxonlabel_id)));
2485
    SELECT source.shortname AS datasource, sourcelist.name AS "institutionCode", specimenreplicate.collectioncode_dwc AS "collectionCode", specimenreplicate.catalognumber_dwc AS "catalogNumber", specimenreplicate.sourceaccessioncode AS "occurrenceID", canon_place.country, canon_place.stateprovince AS "stateProvince", datasource_place.county, CASE WHEN canon_place.geovalid THEN coordinates.latitude_deg ELSE county_centroids.latitude END AS "decimalLatitude", CASE WHEN canon_place.geovalid THEN coordinates.longitude_deg ELSE county_centroids.longitude END AS "decimalLongitude", CASE WHEN canon_place.geovalid THEN coordinates.coordsaccuracy_m ELSE _km_to_m(county_centroids.error_km) END AS "coordinateUncertaintyInMeters", CASE WHEN canon_place.geovalid THEN 'source data'::coordinatesource WHEN (county_centroids.row_num IS NOT NULL) THEN 'georeferencing'::coordinatesource ELSE NULL::coordinatesource END AS "coordinateSource", CASE WHEN canon_place.geovalid THEN NULL::text WHEN (county_centroids.row_num IS NOT NULL) THEN 'county centroid'::text ELSE NULL::text END AS "georeferenceProtocol", (canon_place.geovalid)::integer AS geovalid, ("newWorldCountries"."isNewWorld")::integer AS "isNewWorld", COALESCE(project.sourceaccessioncode, project.projectname) AS "projectID", COALESCE(location.sourceaccessioncode, NULLIF(array_to_string(ARRAY[COALESCE(parent_location.sourceaccessioncode, parent_location.authorlocationcode), location.authorlocationcode], '; '::text), ''::text)) AS "locationID", COALESCE(parent_location.authorlocationcode, location.authorlocationcode) AS "locationName", CASE WHEN (parent_location.location_id IS NOT NULL) THEN location.authorlocationcode ELSE NULL::text END AS subplot, plantobservation.authorplantcode AS "individualCode", COALESCE(location.elevation_m, parent_location.elevation_m) AS "elevationInMeters", _m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", COALESCE(locationevent.obsstartdate, parent_event.obsstartdate, aggregateoccurrence.collectiondate) AS "dateCollected", family_higher_plant_group.higher_plant_group AS "higherPlantGroup", taxonverbatim.family, taxonverbatim.genus, ((taxonverbatim.genus || ' '::text) || taxonverbatim.specific_epithet) AS "speciesBinomial", taxonverbatim.taxonname AS "taxonName", taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[COALESCE(taxonverbatim.genus, taxonverbatim.family), COALESCE(taxonverbatim.specific_epithet, taxonverbatim.morphospecies)], ' '::text), ''::text) AS "scientificNameWithMorphospecies", ((threatened_taxonlabel.taxonlabel_id IS NOT NULL))::integer AS threatened, identifiedby.fullname AS "identifiedBy", taxonoccurrence.growthform AS "growthForm", (((cultivated_family_locations.country IS NOT NULL) OR _or(taxonoccurrence.iscultivated, location.iscultivated)))::integer AS cultivated, CASE WHEN (taxonoccurrence.iscultivated IS NOT NULL) THEN taxonoccurrence.cultivatedbasis WHEN (location.iscultivated IS NOT NULL) THEN NULL::text ELSE NULL::text END AS "cultivatedBasis", collector.fullname AS "recordedBy", plantobservation.authorplantcode AS "recordNumber", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", _m_to_cm(stemobservation.diameterbreastheight_m) AS "diameterBreastHeight_cm", stemobservation.height_m, stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", taxonoccurrence.sourceaccessioncode AS "taxonOccurrenceID", taxonoccurrence.authortaxoncode AS "authorTaxonCode", plantobservation.sourceaccessioncode AS "individualObservationID", stemobservation.authorstemcode AS "authorStemCode" FROM (((((((((((((((((((((((((((source JOIN location USING (source_id)) LEFT JOIN locationevent USING (location_id)) LEFT JOIN location parent_location ON ((parent_location.location_id = location.parent_id))) LEFT JOIN locationplace ON ((locationplace.location_id = COALESCE(parent_location.location_id, location.location_id)))) LEFT JOIN place datasource_place USING (place_id)) LEFT JOIN place canon_place ON ((canon_place.place_id = datasource_place.canon_place_id))) LEFT JOIN coordinates ON ((coordinates.coordinates_id = canon_place.coordinates_id))) LEFT JOIN "newWorld".iso_code_gadm ON ((iso_code_gadm."GADM country" = canon_place.country))) LEFT JOIN "newWorld"."newWorldCountries" ON (("newWorldCountries"."isoCode" = iso_code_gadm."2-digit iso code"))) LEFT JOIN geoscrub.county_centroids ON ((((canon_place.country = 'United States'::text) AND (county_centroids.state = canon_place.stateprovince)) AND (county_centroids.county = canon_place.county)))) LEFT JOIN taxonoccurrence USING (locationevent_id)) LEFT JOIN locationevent parent_event ON ((parent_event.locationevent_id = locationevent.parent_id))) LEFT JOIN project ON ((project.project_id = COALESCE(locationevent.project_id, parent_event.project_id)))) LEFT JOIN method ON ((method.method_id = COALESCE(locationevent.method_id, parent_event.method_id)))) LEFT JOIN party collector ON ((collector.party_id = taxonoccurrence.collector_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) LEFT JOIN sourcelist ON ((sourcelist.sourcelist_id = specimenreplicate.institution_id))) LEFT JOIN taxondetermination ON (((taxondetermination.taxonoccurrence_id = taxonoccurrence.taxonoccurrence_id) AND taxondetermination.iscurrent))) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) LEFT JOIN taxonverbatim USING (taxonverbatim_id)) LEFT JOIN taxonlabel USING (taxonlabel_id)) LEFT JOIN family_higher_plant_group ON ((family_higher_plant_group.family = taxonverbatim.family))) LEFT JOIN cultivated_family_locations ON (((cultivated_family_locations.family = taxonverbatim.family) AND (cultivated_family_locations.country = canon_place.country)))) LEFT JOIN threatened_taxonlabel ON ((threatened_taxonlabel.taxonlabel_id = taxonlabel.taxonlabel_id)));
2485 2486

  
2486 2487

  
2487 2488
--

Also available in: Unified diff