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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7326 almost 12 years Aaron Marcuse-Kubitza backups/Makefile: %.md5/test: Added comment to ...
  bin 7531 almost 12 years Aaron Marcuse-Kubitza my2pg_export: Use the --quick option to facilit...
  config 7390 almost 12 years Aaron Marcuse-Kubitza config/: Set svn:ignore to exclude *password files
  inputs 7528 almost 12 years Aaron Marcuse-Kubitza inputs/NY/: Added SQL export for refresh
  lib 7532 almost 12 years Aaron Marcuse-Kubitza lib/MySQL.*.sql.make: Documented that $server c...
  mappings 7527 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Regenerated from wiki. Br...
  schemas 7466 almost 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Added _mm_to_m()
  to_do 7355 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.2013.xls: Updated with changes d...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.9 KB 7423 almost 12 years Aaron Marcuse-Kubitza root Makefile: misc-Linux: Added command to cop...
README.TXT 18.4 KB 7530 almost 12 years Aaron Marcuse-Kubitza README.TXT: Datasource setup: Added instruction...
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
7532 02/13/2013 11:55 PM Aaron Marcuse-Kubitza

lib/MySQL.*.sql.make: Documented that $server can also contain a username (which will be used by ssh)

7531 02/13/2013 11:51 PM Aaron Marcuse-Kubitza

my2pg_export: Use the --quick option to facilitate exporting large tables (it avoids retrieving all rows before outputting any of them)

7530 02/13/2013 11:00 PM Aaron Marcuse-Kubitza

README.TXT: Datasource setup: Added instructions for MS Access databases

7529 02/13/2013 10:43 PM Aaron Marcuse-Kubitza

README.TXT: Datasource setup: MySQL inputs: Added instruction to skip the Add input data for each table section

7528 02/13/2013 10:40 PM Aaron Marcuse-Kubitza

inputs/NY/: Added SQL export for refresh

7527 02/12/2013 01:08 PM Aaron Marcuse-Kubitza

mappings/VegCore.htm: Regenerated from wiki. Brad's new DwC ID terms spreadsheet has now been added, and a number of the ID terms clarified, disambiguated, and recategorized. In particular, institutionCode has now been split into the custodialInstitutions and collectingInstitution, to differentiate between which institution has the specimen vs. stamped the specimen. This distinction is important because the catalogNumber, stamped on the specimen, is only unique within the collectingInstitution. Most datasources don't unambiguously specify which institution their institutionCode is referring to, so it has been assumed to be custodialInstitutions unless a data dictionary says otherwise (as is the case for UNCC). In addition, a MatchedTaxonDetermination table has been added with the *_matched fields from TNRS.

7526 02/12/2013 12:15 PM Aaron Marcuse-Kubitza

inputs/CVS/observation_/map.csv: baseSaturation: Resolved ambiguous term

7525 02/12/2013 12:09 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.vocab.csv: Ignore leading ? when sorting so that ambiguous terms sort alphabetically with other terms. This prevents terms from moving from their previous location when they become ambiguous.

7524 02/12/2013 12:07 PM Aaron Marcuse-Kubitza

Added sort_ci to sort a spreadsheet, ignoring leading punctuation

7523 02/12/2013 12:05 PM Aaron Marcuse-Kubitza

mappings/VegCore.vocab.csv: Changed line endings to \r\n in preparation for having a Python script run on it (which changes the line endings)

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