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Revision 9530

Added by Aaron Marcuse-Kubitza over 11 years ago

bin/tnrs_db: documented how to estimate total runtime. note that our tnrs_db wrapper in inputs/.TNRS/tnrs/tnrs.make uses inputs/.TNRS/tnrs/logs/tnrs.make.log.sql as the log file.

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tnrs_db
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#!/usr/bin/env python
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# Scrubs the taxonlabels in VegBIEN using TNRS.
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# to estimate total runtime:


  		




  
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# bin/psql_vegbien <<<'SELECT COUNT(*) FROM tnrs_input_name'


  		




  
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# # names from above * 1.5 multiplier for scrubbing accepted names


  		




  
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# (the test_taxonomic_names sample from Brad produces 8 accepted names for


  		




  
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# 15 input names)


  		




  
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# * ((# ms/name from log file * 1 sec/1000 ms) + (# sec to run


  		




  
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#   `SELECT * FROM "tnrs_input_name"` in log file / tnrs.max_names names/batch))


  		




  
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# * 1 hr / 3600 sec * 1 day / 24 hr = # days


  		




  
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import os.path


  		




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import sys


  		




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