2011-10-13 conference call¶

Questions to address¶

start modifying VegBank?
- make copy because don't have sudo access?
first changes to make
prototypes for 10/24 working group
~~VegX or simplified VegBank as import schema?~~: VegX and DwC
write VegX to VegBank XSLT?
outputs of 10/24 working group
other databanks important to integrate with
~~add foreign keys to BIEN 2 database in order to auto-generate ERD?~~: we have a VegBIEN ERD instead

benchmarking/profiling of queries
BIEN plone site, iPlant framework site, Redmine issue tracking site
scientists need access to Redmine
data posted on wiki
Brad has main thoughts about status and what to look at
reviewing Plone site, VegX schema
Bob Peet, Mike Lee: getting access to VegBank
for working group meeting: what currently exists, where to go
talk to BIEN PIs (e.g. Steve Dolins)
useful to have examples of raw data coming in to framework
Brad collating raw data
processing of data before import into BIEN 2
representative materialized result sets that would be useful to scientists
things in BIEN useful to have
significant overlap of result sets
- significant different only in # of materialized records
need data that you might get from a BIEN query and feed into analyses
- types of raw data being downloaded from a database
data being collected in many different ways
import raw data into BIEN with minimal loss of info
Bradley Univ efforts: ?
need time component in BIEN 2 db
current BIEN 2 db allows longitudinal analyses
BIEN 2 missing a lot of metadata
look at VegBank, VegX
don't retain much of BIEN 2 db structure
CTFS model better
user dataset protection
SALVIAS fairly basic; we need something all-encompassing
need correct underlying model for scientific info

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