2011-12-01 conference call¶
- Brad's meeting notes: BIEN_db_meeting_20111201.docx
To do¶
VegX/*s/taxonNameUsageConcept/voucher
must contain collector's last nameIgnore SALVIASvoucher_string
because it is sometimes missing collector's nameIgnore SALVIAS TaxonScrubber, but consider how they might fit into*_status
fields/*s/taxonDetermination/*s/taxonRelationshipAssertion/assertion/{fit,confidence}
fieldsidentify issues in existing mappings, note them in comments column, and e-mail to group for feedback- (info) in eventual GUI tool for creating mappings, show preview of sample values for a field to assist mapping
- list of possible enum values, statistical distribution of numerical values, or most common text values
spend 1 week looking for formal mechanism to do mapping: not 1 week, but enough to know that VegBank and VegX formats are on the right tracklook into VegBranch's way of capturing mappings and metadata: data is loaded into a "VegBank module database" (w/ VegBank schema) and then exported to XMLlook into Altova XMLSpy's graphical generation of XPathsdetermine if XQuery's superset of XPath will do the queries we want: noe-mail Mike Lee to find out which docs/sources he used to create the XML serialization format for VegBankmake sure taxonomic elements are correctly represented in VegXdevelop benchmark tests to check that datasource data was inserted correctly into VegBank- these are pairs of summarizing queries which, when run on their respective databases, produce the same results
Brad will produce benchmark queries for SALVIASand NYBG, and Aaron will translate them into VegBank
need list of milestones for the next 6-12 monthsadd conference call tasks to Redmine issue trackerresearch Bourret's XML-ER mappingresearch XQuery pointer dereferencing with higher-level operators- read
CLIOarticles and look up relevant references look into RDF querying with SparQL