Project

General

Profile

2012-03-23 conference call

To do

Aaron

  1. Re-retrieve SpeciesLink, REMIB data
    • SpeciesLink Tapir script takes > 1 day
  2. Tune PostgreSQL
    • 10-50x DB slowdown on VM versus host machine
    • see e-mail from Edwin at iPlant
    • increase memory to 2x
    • increase cache size
    • multiple inserts at once
    • switch to HPC environment?
    • move to VM cluster?
  3. Research whether tree cross-linking algorithm already exists: It does
    • BMC Bioinformatics, Google Scholar, Phylogeny