2012-03-23 conference call¶

• Table of contents
• 2012-03-23 conference call
  • To do
    • Aaron

To do¶

Aaron¶

1. Re-retrieve SpeciesLink, REMIB data
   • SpeciesLink Tapir script takes > 1 day
2. Tune PostgreSQL
   • 10-50x DB slowdown on VM versus host machine
   • see e-mail from Edwin at iPlant
   • increase memory to 2x
   • increase cache size
   • multiple inserts at once
   • switch to HPC environment?
   • move to VM cluster?
3. Research whether tree cross-linking algorithm already exists: It does
   • BMC Bioinformatics, Google Scholar, Phylogeny