initial commit for code generating figures and analyses for NASA Biodiversity conference poster

adding variables to plot RMSE by tiles summary over 30 years

debugging part3, assessment part3 for combining yearly assessment

scaling assessment part3, functions to combine yearly assessment used in stage 8

debugging overall 30 years combination of assessment for region 4, stage 8

running stage 7 mosaicing for region 4 on 1999 for poster NASA biodiversity conference

running overall assessment stage8 30 years summary for region 4, South America

testing code with new flag value and masking file

fixing problem with masking and no data values

more debugging of mask and testing of code

fixing mask used and no data values

adding compression and debugging for valid range and rescaling of mosaicing

valid value range with gdal calc in mosaic function

adding valid range parameter for mosaicing function script

listing of files using glob and minor clean up to mosaicing function script

adding use int and scaling option to function mosicing script

adding valid range option to master script mosaicing

modification of master script mosaicing stage 7 adding use integer and scaling option

stage 7 mosaicing, major clean up and modification to allow call from shell for jobs on NEX

mosaicing script shell script for job, modifications and clean up with comments

testing function mosaicing before shell script

turning script into shell callable code for stage 7 mosaicing

testing stage 7 mosaicing with layers options and temporary files removal

testing mosaicing stage 7 and fixing inputs

more changes to master script 7, stage 7 and testing

stage 7 mosaicing following assessment, script cleaned and integrated to workflow

mosaicing functions, option to remove temporary files

mosaicing functions, fixing outputs names and directories

fixing function to create mosaics of residuals

mosaicing script function, fixing output filename and output directory

testing mosaicing in the workflow and debugging

mosaicing script, adding option to remove temporary files after mosaicing

mosaicing script, clean up of code and debugging for options

mosaicing script, adding options to run accuracy layers, variable predicted and other options

mosaicing script, testing residuals generation function for raster surface

fixing data range for mosaicing, output dir and reading of assessment inputs

mosaicing script, major changes to further integrate code in the workflow

analyses of extremes more changes and debugging to record data

analyses of extremes, debugging assessment part5

analyses of extremes, fixing figures for assessment part 5

analyses of extreme values part 5 assessment, examining frequency of extremes by tiles

analyses of extreme values, part 5 assessment script adding section for missing values

initial commit new code for extreme values study, scaling up assessment part 5

running assessment overall for region 23

overall assessment 1996-2014 for region 5 using stage 8 master script

running master script stage 6 with updated assessment part2 and fig fix for NEX

debugging assessment part2 related to figures count and shapefile plotting

adding additional arguments to run stage 8 from shell

debugging call to assessment part2 in stage 8

making stage 8 callable from the shell

initial commit stage 8 master script

assessment part3, solving figures count and clean up

assessment part3, solving error in figure 7 related to lattice and shapefiles

assessment part3, replacing slight bug

assessment part3, tracking figures and listing in table

combining inputs from accuracy tables, script assessment part3

reading list of dir from files and clean up in assessment part3

assessment part3, adding tile and dates list from region assessment

initial commit, assessment part3 to combine all outputs

fixing issues related to shapefiles

adding figures 8 related to summary of accuracy

figures listing in script assessment part2

modifying assessment script part2 figures creation

stage 6 master script using modified figure assessment script2

more changes to part3 assessment overall figure combined assessment

debugging of figures and adding figure 9 to produce yearly comparison of RMSE

initial commit assessment part3 to combine yearly results into figures for presentation

part2 assessment figure production, for testing on bridge

more changes to part2 assessment figure 2 production to clean up and record figures produced

part2 assessment figure production debugging of errors related to shapefiles and lattice

part2 assessment figure production tested and debugged on bridge

more changes to python stage 4 script to make it work for stage 6

initial commit of python script from Alberto modified for stage6

running 2009 to 2014 region 4, stage 6 on bridge for testing

master script stage 6, minor bug for shell call

stage6 testing assessment part2 figures and call from the shell

initial commit for stage 7, mosaicing of predictions and accuracy layers productions

master script stage 6 testing assessment with figures

adding sourcing of relevant script for stage 6 assessment and debugging

master script stage 6 assessment, call to assessment function

master script stage 6, adding and removing relevant and irrelevant parameters

initial commit stage 6 assessement of run automated

master script stage 2_3 changes in query to avoid duplication of climatology database queries

initial commit from stage 2_3 master script from Alberto

master script stage 4_5 changes to take into account climatology step existence and modifcations in storage

master script stage 4_5 from Alberto, initial commit

slidify presentation using input assessment figure table from stage 6

scaling up assessment function script part1 slight changes to mosacing

assessment part1 call to figure plot assessment debug for shapefiles not read in

integrating plotting call into assessement part1

plotting figures assessment debugging and checking output table

plotting assessment figure function, collecting output figures into table

assessment part2 plotting of figures checking input parameters and clean up

clean up of assessment figure plotting called from part1

assessment part2 plotting of figures into function callable from stage 6

debugging of function assessment and adding part2 call to make figures

assessment function stage 6, clean up and collecting outputs in assessemnt table

assessment part1a debugging of missing parameter

transforming part1a assessment into a function for call from stage 6: initial changes

splitting assessment and removing copy back to NCEAS