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# Date Author Comment
c7192b5a 07/03/2012 06:28 AM Adam M. Wilson

More updates to output plots

f2b2e7d5 06/18/2012 05:55 PM Adam M. Wilson

Added initial version of LST_Landcover exploration (not finished). Also moved prior version of interpolation procedure (bayesian krig) into repository.

b7b786b1 06/14/2012 12:28 PM Adam M. Wilson

Minor updates to dataset size calculation

4f97017d 06/13/2012 02:35 PM Adam M. Wilson

added processing for 'very cloudy days'

44799b5f 06/06/2012 01:54 PM Adam M. Wilson

Added PRISM comparison to MOD06_summary and added script to calculate 'back-of-the-envelope' estimates of total daily climate layer sizes

c33d3b68 06/04/2012 01:56 PM Adam M. Wilson

Updated MOD06 compile script to process the tiles in parallel using GRASS. This brings processing time for 10 year archive for oregon from 48 hours to ~2 hours on 24 cores. Also added several exploratory analysis to the data_summary script.

0c74b1da 06/04/2012 07:56 AM Adam M. Wilson

Added cloud flag to outputs

08d8290d 05/31/2012 06:56 AM Adam M. Wilson

First 10-year processing of daily mean tifs

e23e9664 05/31/2012 06:55 AM Adam M. Wilson

First full processing of daily mean tifs

979e2d4c 05/24/2012 01:59 PM Adam M. Wilson

MOD06 processing runs well in sequence, but not parallel

2a6b57de 05/23/2012 01:55 PM Adam M. Wilson

Reorganization: moved mindmap to it's own directory to isolate temporary files created when exporting to other formats

5891fba5 05/23/2012 01:44 PM Adam M. Wilson

Add initial version of the 'mind map' for the interpolation project. This file contains an outline of the various stages of the project and links back to issues and code in the blessed repository.
Created during Benoit's visit to Yale May 21-22.

147da66d 05/23/2012 01:43 PM Adam M. Wilson

Adding some MOD06 (cloud product) processing routines. Still a work in progress

ee6357dc 05/23/2012 01:35 PM Adam Wilson

Initial commit

6c9ca794 05/04/2012 09:35 AM Jim Regetz

simplified code by using 'a' flag for r.neighbors (improves 3abda63)

5af6ef96 05/04/2012 09:20 AM Jim Regetz

reorganized AML terrain scripts to reduce superficial redundancy

b9fe1b70 04/09/2012 10:51 AM Jim Regetz

renamed script to multiscalesmooth.R

7a06885b 04/09/2012 10:45 AM Jim Regetz

numerous comment, format, and variable name changes

3abda63e 04/09/2012 10:33 AM Jim Regetz

now actually refining before smoothing (GRASS version)

40cd02ba 04/09/2012 10:33 AM Jim Regetz

reversed order of refine-and-smooth step

c87139a7 04/09/2012 10:32 AM Jim Regetz

added GRASS/Python implementation of multiscale smoother

13367984 03/27/2012 01:06 PM Jim Regetz

added R script to run multiscalesmooth example on Oregon SRTM

e50dfd65 03/27/2012 01:04 PM Jim Regetz

switched to more accurate chisq test

d0cf2921 03/27/2012 01:02 PM Jim Regetz

enhanced smoother to accept sd as a raster, not just a constant

ae79872e 03/27/2012 12:48 PM Jim Regetz

tweaked var names to match Gallant pub; added comments

6871bc85 03/27/2012 08:57 AM Jim Regetz

fixed vwg step

64258f2c 03/26/2012 04:03 PM Jim Regetz

continued R translation of multiscale smoother

2d654eeb 03/26/2012 03:58 PM Jim Regetz

initial R translation of multiscale smoother

7967a0d1 03/20/2012 04:47 PM Jim Regetz

added test script for days missing from our MOD11A1 OR holdings

0fe2dd49 03/19/2012 10:37 PM Jim Regetz

added old GLCNMO land-cover AML scripts (Tien Ming Lee)

86eb951b 03/14/2012 03:11 PM Jim Regetz

added old Oregon topo AML scripts (Tien Ming Lee, John Gallant)

f3cc83bd 03/14/2012 03:04 PM Jim Regetz

renamed layers 'experimental' area to 'commons'

ef593cf1 03/13/2012 02:27 PM Jim Regetz

added repository README file

77ed568c 03/13/2012 02:11 PM Jim Regetz

finished organisms->layers content migration

ff302b98 03/12/2012 03:13 PM Jim Regetz

documented migration of aster gdem1 and gtopo materials

b8943fa1 03/11/2012 09:19 PM Jim Regetz

folded Nunokawa backup file changes into vrt script file

69190fde 03/10/2012 02:17 PM Jim Regetz

cleaned up file permissions

7526fb1c 03/10/2012 02:16 PM Jim Regetz

added in various previously uncommitted scripts

6cc19306 03/08/2012 05:32 PM Jim Regetz

added organisms->layers content migration 'script'

658fd3f6 03/08/2012 04:46 PM Jim Regetz

reorganized terrain-related files

a09a09c0 03/08/2012 04:15 PM Jim Regetz

removed obsolete/preliminary DEM 60N assessment scripts

70b3c019 03/08/2012 04:14 PM Jim Regetz

removed obsolete/preliminary DEM 60N mosaicing scripts

27c1eb57 03/08/2012 04:08 PM Jim Regetz

removed obsolete/preliminary DEM regional mosaicing scripts

a87c0b1d 01/17/2012 03:18 PM Jim Regetz

added old R script to assess our SRTM holdings

190750cf 08/23/2011 09:31 AM Jim Regetz

tweaked aster-check script to work from anywhere

e6b8e1a9 08/04/2011 01:48 PM Jim Regetz

added R script to compare ASTER tile names to locations

8c4849b5 08/03/2011 11:15 AM Jim Regetz

added PDF of boundary assessment doc sent to the group

8711607d 08/03/2011 11:09 AM Jim Regetz

final minor edits before posting to the group

cc5360b4 08/03/2011 11:09 AM Jim Regetz

just minor tweaks to code comments

96629c37 08/03/2011 11:09 AM Jim Regetz

added histogram plot of ASTER-SRTM differences

71407713 08/03/2011 11:09 AM Jim Regetz

removed placeholder cruft from flowdir correlation plots

9fd6a7de 08/03/2011 11:09 AM Jim Regetz

spell-checked boundary analysis doc (aspell)

d126363c 08/03/2011 11:09 AM Jim Regetz

more boundary analysis updates, especially discussion of stats

e6e6f64f 08/03/2011 11:09 AM Jim Regetz

added correlations/RMSE discussion, plus many new edits

8ceb6da6 08/03/2011 11:09 AM Jim Regetz

numerous changes and revisions to boundary assessment doc

085ecdf3 08/03/2011 11:09 AM Jim Regetz

switched plot to bin by SRTM elev rather than ASTER

6626e7db 08/03/2011 11:09 AM Jim Regetz

added ASTER vs SRTM elevation comparision plots

5326e348 08/03/2011 11:08 AM Jim Regetz

revamped aspect/flowdir boundary assessments to use circular statistics

3afd1c7b 08/03/2011 11:08 AM Jim Regetz

split the dem-fusion code snippets into separate script files

933632ec 08/03/2011 11:08 AM Jim Regetz

minor cleanup of code comments

edb890ff 08/03/2011 11:08 AM Jim Regetz

added multiresolution spline fused layer as terraflow input

0ffc32ec 08/03/2011 11:08 AM Jim Regetz

added prose text to boundary document, and (partly) refactored figures

3c841968 08/03/2011 11:08 AM Jim Regetz

early version of 60N boundary assessment report

7cf747b0 08/03/2011 11:08 AM Jim Regetz

updated boundary assessment code to use multires spline results

4bc2a9e9 08/03/2011 11:08 AM Jim Regetz

fixed critical typo in post-processing enblended layer

066ba573 08/03/2011 11:08 AM Jim Regetz

added GRASS commands to run terraflow on Canada boundary DEMs

b02e39a0 08/03/2011 11:08 AM Jim Regetz

added R code to create various boundary assessment figures

f12b574f 08/03/2011 11:08 AM Jim Regetz

added R code to 'enblend' DEMs (multires splines, Burt & Adelson, 1983)

19c867b6 08/03/2011 11:08 AM Jim Regetz

superficial tweaks to DEM fusion R code

4df82d84 08/03/2011 11:08 AM Jim Regetz

added code to profile aspect near 60N boundary (just like slope code)

48392b95 08/03/2011 11:08 AM Jim Regetz

separated out code to profile slope near 60N boundary

f6c86ce4 08/03/2011 11:08 AM Jim Regetz

added GRASS/R code to run/compare flow analysis on Oregon test area

9dcb0aed 08/03/2011 11:08 AM Jim Regetz

added GRASS terraflow code plus basic R diagnostics for 60N test case

7210104d 08/03/2011 11:08 AM Jim Regetz

added slope boundary descrepancy plotting code

445a6521 08/03/2011 11:08 AM Jim Regetz

added GDAL/R code for fusing and correcting DEMs near Canadian border

674bbf95 07/15/2011 04:58 PM Rick Reeves

Set of shell scripts used to create prototype terrain mosaic layers from CGIR SRTM and ASTER GDEM data tiles.
Two prototypes generated: 3 ArcSecond and 30 ArcSecond resolution. There are some minor inconsistencies in these scripts; however, the mosaic layer components that they generate appear to be valid, except for some...

74edc384 06/13/2011 05:42 PM Rick Reeves

First version of this script; dKc constant is not optimally set yet. Need more experimentation.

e11b5636 06/13/2011 02:47 PM Rick Reeves

Version of pixel pair plotting script that adds 'Lowess Lines' to center of each scatterplot.

Note: Loess lines feature has only been tested with the input file "pixelPairs36000_5_8EvenSortCol1.csv", used in the script.
Some table column names are hard-coded into the script.

a36cc837 06/13/2011 01:51 PM Rick Reeves

This version has improved, vertically-stacked plots.

5a9ae465 06/13/2011 01:43 PM Rick Reeves

First version of 'image blending' solution that employs a linear decay function to blend ASTER and SRTM pixel values south of 60 degree N Latitude line.

8ff00cae 06/06/2011 05:49 PM Rick Reeves

First version of ASTER/SRTM boundary adjustment R script that tests a prototype 'exponential decay' function on a sub image of the DEM imaage mosaic.

05968504 06/01/2011 02:59 PM Rick Reeves

First version of R script that adjusts the boundary between ASTER and SRTM components of DEM image mosaic created for Environment and Organisms project. This prototype version uses a set of 'narrow' test images, applies a linear ramp function. Later versions will use more sophisticated functions.

ec0af318 05/18/2011 11:42 AM Rick Reeves

this table created using the latest and best-aligned versions of the 'boundary validation' (ASTER/SRTM/CDEM) subimages. Input to the script: CreateImageDiffPlotsOverlayNewPlots.r

4101796f 05/18/2011 11:10 AM Rick Reeves

Added option: write individual plots (not trplets - yet) to separate JPG files. New command line argument: JpgPlotFileFlag

db78f686 05/17/2011 12:13 PM Rick Reeves

Table used by CreateImageDiffPlotsOverlayNewPlots.r
to create latest set of (normalized) difference scatterplots

cc196a45 05/17/2011 12:12 PM Rick Reeves

This version used to create the large (36000 row) table used to generate latest bounday analysis scatterplots.

acf2afb2 05/17/2011 12:11 PM Rick Reeves

This version creates the (normalized) difference image plots
that Rick, Jim, and Mark are reviewing as part of the final 'ASTER/SRTM boundary analysis' work.
The input file pixelPairs36000_5_8EvenSortCol1.csv also checked in.

8fd072d3 05/16/2011 04:11 PM Rick Reeves

The first version of 'CreateImageDiffPlotsOverlay.r' that produces the 'three-panel' plot containing the boundary differences for ASTER / Border / SRTM.

49c441dd 05/16/2011 10:07 AM Rick Reeves

Latest version of Elevation Difference Image Analysis plot generator: Plots remain on screen until end of script (user presses 'final' <cr>

TODO: Add legend to plots.

218022c8 05/15/2011 01:29 PM Rick Reeves

correct CDEM image values

3db72d58 05/15/2011 01:29 PM Rick Reeves

With correct CEDM input image filename.

9d19fb11 05/15/2011 12:26 PM Rick Reeves

Uses correct, even boundary input images

b81f0431 05/15/2011 12:25 PM Rick Reeves

made with latest version of makeImagePairTable w/correct images.

ce53f1db 05/15/2011 11:39 AM Rick Reeves

created with latest version of code 5/15

27c37be1 05/15/2011 11:39 AM Rick Reeves

Tested Sunday 5/15 - produces table tableForRic2000_5_8.csv

4b8cd90f 05/13/2011 03:33 PM Rick Reeves

In header, better 'to run' instructions.

a0267fb3 05/13/2011 03:21 PM Rick Reeves

input table for the R script: MosaicCdemDifferencePlots.r
Created by the R script: makeImagePairFiles.

80390607 05/13/2011 03:19 PM Rick Reeves

First working version - very simple - just 'source' the file and press <CR> to walk through the plots.

Next version: 'panel plots' and improved plot axes.

d732553c 05/13/2011 02:38 PM Rick Reeves

Very first version of plot making script. Plots need consolidation into 'panel plots', and plot labels need to be improved.

Uses input file:
tableForMark4000_5_8_SortColID.csv, also checked in.

f028b3dc 05/10/2011 05:05 PM Rick Reeves

These scripts are complete but may not run correctly due to conflicts in the extents of the input raster files. Recheck inputs.