Activity
From 01/13/2012 to 02/11/2012
02/10/2012
- 06:03 PM Task #346: add georeferencing support to schema
- We will add a separate locationdetermination for the GNRS-validated place, with calculated set to true.
- 06:01 PM Task #355 (Resolved): implement morphospecies using a scoped plantconcept
- 02:40 PM Task #355 (Resolved): implement morphospecies using a scoped plantconcept
- 06:01 PM Task #356 (Resolved): support subplot events that link to parent plot events
- 02:41 PM Task #356 (Resolved): support subplot events that link to parent plot events
- 02:43 PM Task #357 (Rejected): make shortlist of 1st-level fields a method should have
- duplicate of #358
- 02:42 PM Task #357 (Rejected): make shortlist of 1st-level fields a method should have
- (Brad and Mike)
* area, size, etc.
* see example plot methods on nimoy in @/home/bien_shared/methodology/plotMeth... - 02:42 PM Task #358 (Resolved): make shortlist of 1st-level fields a method should have
- (Brad and Mike)
* area, size, etc.
* see example plot methods on nimoy in @/home/bien_shared/methodology/plotMeth...
02/09/2012
- 06:27 PM Task #352: create way to represent methods hierarchically in schema
- I added a basic plotmethod table. What hierarchical information do we want to add?
- 06:26 PM Task #350: implement methods in VegBIEN
- I added a basic plotmethod table
- 05:42 PM Task #348: 1st draft of schema
- e-mail from Martha Narro on 2012-2-9:
* 1:1 constraint on taxonOccurrence has been dropped, so that topic is final... - 05:40 PM Task #345: integrate GNRS into VegBIEN
- See "iPlant Geospatial Roadmap":https://pods.iplantcollaborative.org/wiki/display/SOT/Geospatial+Roadmap+%28revised%2...
- 05:36 PM Task #346: add georeferencing support to schema
- "DwC georeferencing fields":http://code.google.com/p/darwincore/wiki/Location#Georeference_Terms:
* decimalLatitude
... - 05:34 PM Task #296 (Resolved): Direct mapping from native salvias_plots MySQL database to VegBIEN
- SALVIAS stems have been mapped. Mappings are in SVN under "@inputs/SALVIAS/maps@":https://projects.nceas.ucsb.edu/nce...
- 05:31 PM Task #304: Complete full dataset imports to VegBIEN via VegX of NYBG and SALVIAS
- First full NYBG load is complete, with 0.12% error rate. Full stats under [[Benchmarking]].
- 05:30 PM Task #313 (Resolved): Import full NYBG data
- First full NYBG load is complete, with 0.12% error rate. Full stats under [[Benchmarking]].
- 05:29 PM Task #323 (Resolved): map NYBG data
- First full NYBG load is complete, with 0.12% error rate. Full stats under [[Benchmarking]].
- 05:28 PM Task #342 (Resolved): make DwC_BIEN schema
- [[DwC schema]] has a list of fields in DwC-BIEN, mappings from different versions of DwC, and mappings to VegBIEN
02/06/2012
- 10:25 AM Task #317: Direct mapping from VegX to VegBIEN
- Mappings have been made for SALVIAS VegX fields
- 10:23 AM Task #333: add traits table to VegBIEN
- VegBank had an existing trait table, which was not included in the ERD. We can modify that table for our needs.
- 10:23 AM Task #332: switch to VegX 1.5.3
- VegX 1.5.3 is available, so we're switching to that instead
- 10:22 AM Task #313: Import full NYBG data
- Almost done with the first full load of the NYBG data. Currently takes 2 days.
02/04/2012
- 03:27 PM Task #349: make ERD of full schema
- Full ERD is available at [[VegBIEN schema]]. A few tables are not yet included, because their lines to existing table...
- 03:25 PM Task #354 (Resolved): list of deliverables for next week (2/6-2/10)
- See [[2012-02-03 conference call]]
02/03/2012
- 05:33 PM Task #347 (Resolved): revise milestones
- Brad and Martha have approved it
- 03:15 PM Task #347: revise milestones
- My revisions are on the wiki under *[[Milestones]]*
- 01:57 PM Task #347 (Resolved): revise milestones
- 03:18 PM Task #320: Convert user-defined VegX fields to first-class fields
- Brad's meeting notes on 2012-2-3:
* Aaron to make whatever modifications are needed to match VegBien schema
* Sub... - 02:04 PM Task #346: add georeferencing support to schema
- * support DwC georeferencing fields
- 01:57 PM Task #346 (New): add georeferencing support to schema
- 02:03 PM Task #354 (Resolved): list of deliverables for next week (2/6-2/10)
- 02:02 PM Task #353 (Resolved): add terms from previous versions of DwC to DwC-BIEN
- 02:02 PM Task #352 (Resolved): create way to represent methods hierarchically in schema
- 02:01 PM Task #351 (Resolved): list of fields and method attributes needed to know whether can combine data from different plots
- * critical methodological elements
- 02:00 PM Task #350 (Resolved): implement methods in VegBIEN
- * middle ground between descriptions and ontological metadata
- 01:59 PM Task #349 (New): make ERD of full schema
- 01:58 PM Task #348 (Resolved): 1st draft of schema
- * plots and specimens data
- 01:56 PM Task #345 (Resolved): integrate GNRS into VegBIEN
- * geovalidation in scope
* georeferencing out of scope unless existing implementation
- 01:56 PM Task #344 (Resolved): contact John about GNRS/georeferencing
- * Using PostGIS/R?
- 01:55 PM Task #343 (Resolved): integrate TNRS into VegBIEN
01/30/2012
- 04:15 PM Task #323: map NYBG data
- Infrastructure exists to do full NYBG loads, but there are many errors in the import
- 04:12 PM Task #338 (Resolved): put together samples of SALVIAS data that aggregates individuals and stems in different ways
- See [[SALVIAS issues]]
01/27/2012
- 03:04 PM Task #342 (Resolved): make DwC_BIEN schema
- 03:03 PM Task #341 (New): create verbal descriptions of edge cases
- test cases for whether model can appropriately accommodate data
01/26/2012
- 06:29 PM Task #340 (Resolved): put together definitions of abstract BIEN terms
- * specimen
* voucher
* taxonoccurrence
01/24/2012
- 06:32 PM Task #339 (New): have "schema showdown"
- Discuss different meanings everyone has for various ecological terms, especially:
* taxonoccurrence
* specimen
01/20/2012
- 03:02 PM Task #337 (Closed): VegBIEN table renames
- E-mail from Brad on 2012-1-20:
Hi Mike,
You and Aaron have convinced me. Bob & I were advocating a return to th... - 12:29 PM Task #338 (Resolved): put together samples of SALVIAS data that aggregates individuals and stems in different ways
- * individual count
* stem count
* individuals
* stems
01/19/2012
- 06:06 PM Task #337: VegBIEN table renames
- "observation" can be confusing, because it's not obvious what it's an observation of (a plot, an organism, a stem?). ...
- 06:02 PM Task #337 (Closed): VegBIEN table renames
- E-mail from Brad:
Conceptual definitions of tables:
observation: permanent attributes of a unit or area of obse... - 05:32 PM Task #336 (Resolved): create VegBIEN ERD
- Now live on [[VegBIEN schema]]!
- 04:56 PM Task #336: create VegBIEN ERD
- I discovered that MySQL Workbench can synchronize its model with an existing CREATE script. So, it looks like we can ...
- 04:54 PM Task #336 (Resolved): create VegBIEN ERD
- 11:35 AM Task #302 (Resolved): Make changes to VegBIEN schema
- Extensive changes have been made
- 11:33 AM Task #331 (Resolved): use VegX's individualOrganismObservation/relatedItem to model stems
- Stems are now modeled in VegX. (Note that _VegBIEN_ stems import not complete yet)
- 11:32 AM Task #319: Update statistics/lists of user-defined fields in use in VegX and VegBIEN
- I've done this for NYBG to VegX
- 11:31 AM Task #322 (Resolved): get access to raw CTFS data
- I have the data from Shash, including a SQL dump
- 11:30 AM Task #334 (Resolved): which DarwinCore attributes do we want to include in the specimen table?
- Desired fields have been added or moved from other tables
- 11:30 AM Task #314: Import CTFS data
- I have data from Shash and am working with her to make sure we can parse it
- 11:29 AM Task #318 (Resolved): decide whether to switch to VegX 1.5.2
- In fact, we will switch to 1.5.3, which is now available
01/13/2012
- 03:28 PM Task #335 (Rejected): Look into using Sybase Powerbuilder or IBM Enterprise Vision to map data
- The TACC (Texas Advanced Computing Center) people might have individual licenses they could let us use
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