Activity
From 12/18/2013 to 01/16/2014
01/16/2014
- 11:22 AM Revision 11966: /: svn:ignore the new extern/ dir, which will contain non-UCSB files
- 10:40 AM Task #857 (New): standardize taxon ranks to a common vocabulary
- _requested by Mike Lee:_
> Betula lenta fo. lenta
>
> The fo. seems odd to me.
>
> Then subsp. is used inste... - 10:23 AM Task #856 (New): data provider feedback tables: include the individual records that have errors
- _this has been specifically requested by Peter Jorgensen_
* add a column with a list of associated record IDs
f... - 01:22 AM Revision 11965: bugfix: inputs/.TNRS/schema.sql: scrubbed_family: Name_matched_accepted_family was missing from the TNRS results at one point, so we are now using Family_matched as a workaround to populate this. the workaround is for *accepted names only*, as no opinion names do not have an Accepted_name_family to prepend to the scrubbed name to parse.
- 01:19 AM Revision 11964: inputs/.TNRS/schema.sql: reexported from live DB, which changes the element order
01/15/2014
- 11:23 AM Revision 11963: schemas/vegbien.sql: plot.**, analytical_stem_view, analytical_plot: added project_contributors
- 11:14 AM Revision 11962: schemas/vegbien.sql: added project_contributors()
- 10:18 AM Revision 11961: inputs/VegBank/import_order.txt: added projectcontributor_
- 10:11 AM Revision 11960: inputs/VegBank/projectcontributor_/map.csv, postprocess.sql: added project_participant
- 10:08 AM Revision 11959: mappings/VegCore-VegBIEN.csv: mapped project_participant
- 10:07 AM Revision 11958: mappings/VegCore.htm: regenerated from wiki. merged confusingly-named TaxonObservation into TaxonOccurrence. added project_participant.
- 09:41 AM Revision 11957: added inputs/VegBank/projectcontributor_/
- 09:29 AM Revision 11956: inputs/VegBank/vegbank.~.clean_up.sql: projectcontributor.surname: prepend table name to avoid join collisions
- 09:23 AM Revision 11955: inputs/VegBank/vegbank.~.clean_up.sql, inputs/CVS/cvs.~.clean_up.sql: Prevent "column name specified more than once" errors when tables are joined: put tables in alphabetical order for consistency
- 08:36 AM Revision 11954: web/links/index.htm: updated to Firefox bookmarks. Quick links: removed page descriptions, which clutter up the quick links list.
- 08:34 AM Revision 11953: web/links/index.htm: updated to Firefox bookmarks. Quick links: added VegBIEN FAQ.
- 08:16 AM Revision 11952: bugfix: bin/boldify: also match [[]]-style links at the beginning and end of a line
- 08:11 AM Revision 11951: bin/boldify: made it idempotent
- 08:08 AM Revision 11950: bugfix: bin/boldify: fixed extended regular expression syntax, which doesn't support a \] inside [] (you instead have to put the ] right after the opening [^ )
- 07:59 AM Revision 11949: added bin/boldify, which makes Redmine links bold
01/14/2014
- 09:30 PM Revision 11948: web/links/index.htm: updated to Firefox bookmarks. Quick links: removed page descriptions, which clutter up the quick links list
- 09:28 PM Revision 11947: web/links/index.htm: updated to Firefox bookmarks. Quick links: added link to meetings
- 09:14 PM Revision 11946: web/links/index.htm: updated to Firefox bookmarks. Quick links: reordered in the order they should apper to visitors to the BIEN links page, rather than to me in the bookmarks toolbar.
- 09:04 PM Revision 11945: web/links/index.htm: updated to Firefox bookmarks. updated favicons.
- 08:56 PM Revision 11944: web/links/index.htm: updated to Firefox bookmarks. added links for sPlot and iPlant open-sourcing.
- 08:34 PM Revision 11943: inputs/publishable datasources.xlsx: updated
- 08:31 PM Revision 11942: inputs/datasource_release_status.xlsx: renamed to `publishable datasources.xlsx` to match the spreadsheet title
01/09/2014
- 01:38 AM Revision 11941: planning/meetings/BIEN conference call availability.xlsx: updated
- 12:31 AM Revision 11940: /README.TXT: to synchronize a Mac's settings with my testing machine's: added step to remove the downloaded Spam folder, because spam e-mails often contain viruses that would trigger clamscan
12/20/2013
- 10:45 PM Revision 11939: fix: planning/timeline/timeline.xls: realigned legend
- 10:44 PM Revision 11938: planning/timeline/timeline.xls: hid previous weeks
- 10:43 PM Revision 11937: planning/timeline/timeline.xls: crossed out and hid completed tasks
- 10:41 PM Revision 11936: planning/timeline/timeline.xls: updated for progress
- 05:41 PM Revision 11935: web/links/index.htm: updated to Firefox bookmarks. open-sourcing BIEN: added links for VegBank's license (GPLv2), and how these terms apply to us (a diff of our changes is not GPL-ed under GPLv2, although it is claimed to be GPL-ed under GPLv3)
- 04:41 PM Revision 11934: inputs/VegBank/^taxon_observation.**.sample/create.sql, map.csv: added new project columns
- 04:31 PM Revision 11933: inputs/VegBank/taxon_observation.**/postprocess.sql: added the project table
- 04:25 PM Revision 11932: mapped inputs/VegBank/project/, which includes the projectName for attribution
- 02:56 PM Revision 11931: inputs/CVS/^taxon_observation.**.sample/create.sql, map.csv: added new project columns
- 02:44 PM Revision 11930: inputs/CVS/taxon_observation.**/postprocess.sql: added the project table
- 02:42 PM Revision 11929: inputs/CVS/project/map.csv: mapped stopDate->projectEndDate
- 02:35 PM Revision 11928: mapped inputs/CVS/project/, which includes the projectName for attribution
- 01:25 AM Revision 11927: inputs/VegBIEN/Redmine/svn/.htaccess: updated to use *much* faster direct repository URL rather than Redmine web interface, now that the repository itself is publicly accessible in addition to the Redmine view of it
- 01:18 AM Revision 11926: planning/timeline/timeline.xls: updated for progress
- 01:13 AM Revision 11925: planning/timeline/timeline.2013.xls: renamed to timeline.xls so that this can continue to be used for 2014 (leaving a symlink from the old filename to preserve permalinks)
- 12:28 AM Revision 11924: fix: inputs/TEX/Specimen*/map.csv, postprocess.sql: habitat: also placed in occurrenceRemarks so that this field gets parsed for growth form information, as requested by Brad (wiki.vegpath.org/TEX_validation#2013-2-26)
12/19/2013
- 11:49 PM Revision 11923: fix: inputs/TEX/Specimen*/map.csv: mapped constant values for specimenHolderInstitutions, country. these have to be added with `rm=1 ./inputs/TEX/Specimen.../run postprocess`.
- 11:42 PM Revision 11922: bugfix: inputs/TEX/Specimen2/map.csv: mapped BARCODE to accessionNumber so that we have a unique ID for each row
- 11:11 PM Revision 11921: schemas/vegbien.sql: analytical_stem_view: scientificName_verbatim: don't use taxonverbatim.taxonname+author as the scientificName_verbatim if only the author is provided. (this lead to weird scientificName_verbatims that contain just the author.)
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