06/06/2014

08:45 AM Task #934: Data Dictionary

added links where link creation could be automated, and populated the example terms from each source Aaron Marcuse-Kubitza

06/05/2014

09:04 AM Task #934: Data Dictionary

indicated provenance of the @analytical_stem_view@ (viewFullOccurrence) terms Aaron Marcuse-Kubitza

04:42 AM Task #936 (New): in TNRS client, detect Internal Server Errors when they occur instead of after the pauses have timed out

the problem is that an "is it ready" check can produce a variety of errors, including Internal Server Errors, but all... Aaron Marcuse-Kubitza

03:53 AM Task #935: TNRS crashes when scrubbing names with two infraspecific epithets

a workaround has been implemented that filters out unsafe taxon names. however, the unsafe names are hardcoded, so a ... Aaron Marcuse-Kubitza

06/04/2014

10:23 PM Task #935 (Resolved): TNRS crashes when scrubbing names with two infraspecific epithets

h3. problem
the error occurs on this name:
Lamiaceae Agastache pallidiflora (Heller) Rydb. spp. pallidiflora va... Aaron Marcuse-Kubitza

06:00 PM Task #917: TNRS: Instructions for new version with TPL

The taxon names Brad sent for testing the rescrubbing are now attached. Martha Narro

06/03/2014

03:24 PM Task #934 (New): Data Dictionary

Define the Data Dictionary terms for VegBIEN and associated tables.
# -First define the (approximately 60) terms nee... Martha Narro

05/27/2014

09:24 PM Task #927 (Resolved): move morphospecies name formation to normalized DB

see [[TNRS derived columns#scrubbed_morphospecies_binomial]] > @scrubbed_morphospecies_binomial@ Aaron Marcuse-Kubitza

05/22/2014

04:43 PM Task #932 (New): Discovering BIEN data through iPlant

iPlant will assign DOIs to datasets made public through its infrastructure. For the BIEN db data, the plan is:
* t... Martha Narro

04:32 PM Task #931 (New): BIEN db at iPlant

Parent issue for tasks related to moving BIEN3 relational database and associated analytical views to iPlant. Martha Narro

05/20/2014

04:26 PM Task #929 (New): change TNRS client to store metadata

* see details in [[2013-06-13 conference call#include-TNRS-version-and-settings-in-TNRS-cache]]
* after implementi... Aaron Marcuse-Kubitza

04:17 PM Task #928 (New): switch to new TNRS setup

# #927 (part of #915)
# #917
# #916 (using rescrubbed names)
# #915
# -#929 (metadata)- _postponed_ Aaron Marcuse-Kubitza

03:26 PM Task #927 (Resolved): move morphospecies name formation to normalized DB

* currently, it's only in the analytical_stem view Aaron Marcuse-Kubitza

05/15/2014

09:43 AM Task #917: TNRS: Instructions for new version with TPL

Aaron, for now (next couple of months, this must be done on the development TNRS web app since TPL is only on the dev... Martha Narro

05/13/2014

02:32 PM Task #917 (New): TNRS: Instructions for new version with TPL

From Brad:
I’ve given some thought to the TPL matter. The algorithm isn’t hard, but Aaron will have to do the sort... Martha Narro

05/12/2014

05:03 PM Task #916: Taxon name validation: VegBank

regarding:
Line 617: TNRS gives a synonym for Aronia prunifolia in a different genus, but this is missed here
L... Martha Narro

04:35 PM Task #916 (New): Taxon name validation: VegBank

Hi Aaron,
Bob only had time to get part way through the VegBank taxon validation file you sent, but there are some... Martha Narro

03:13 PM Task #915 (New): Taxon Name Validation

1. Please correct the following in taxonMorphospecies:
1.1. -Family should be included in taxonMorphospecies only ... Martha Narro