06/17/2014

05:25 PM Task #935 (Resolved): TNRS crashes when scrubbing names with two infraspecific epithets

iPlant fixed this Aaron Marcuse-Kubitza

06/12/2014

10:11 AM Task #937 (New): fix missing date fields

* -do a search for null date fields to figure out which datasources this applies to- _see "missing dates spreadsheet"... Aaron Marcuse-Kubitza

06/06/2014

08:45 AM Task #934: Data Dictionary

added links where link creation could be automated, and populated the example terms from each source Aaron Marcuse-Kubitza

06/05/2014

09:04 AM Task #934: Data Dictionary

indicated provenance of the @analytical_stem_view@ (viewFullOccurrence) terms Aaron Marcuse-Kubitza

04:42 AM Task #936 (New): in TNRS client, detect Internal Server Errors when they occur instead of after the pauses have timed out

the problem is that an "is it ready" check can produce a variety of errors, including Internal Server Errors, but all... Aaron Marcuse-Kubitza

03:53 AM Task #935: TNRS crashes when scrubbing names with two infraspecific epithets

a workaround has been implemented that filters out unsafe taxon names. however, the unsafe names are hardcoded, so a ... Aaron Marcuse-Kubitza

06/04/2014

10:23 PM Task #935 (Resolved): TNRS crashes when scrubbing names with two infraspecific epithets

h3. problem
the error occurs on this name:
Lamiaceae Agastache pallidiflora (Heller) Rydb. spp. pallidiflora va... Aaron Marcuse-Kubitza

06:00 PM Task #917: TNRS: Instructions for new version with TPL

The taxon names Brad sent for testing the rescrubbing are now attached. Martha Narro

06/03/2014

03:24 PM Task #934 (New): Data Dictionary

Define the Data Dictionary terms for VegBIEN and associated tables.
# -First define the (approximately 60) terms nee... Martha Narro

05/27/2014

09:24 PM Task #927 (Resolved): move morphospecies name formation to normalized DB

see [[TNRS derived columns#scrubbed_morphospecies_binomial]] > @scrubbed_morphospecies_binomial@ Aaron Marcuse-Kubitza

05/22/2014

04:43 PM Task #932 (New): Discovering BIEN data through iPlant

iPlant will assign DOIs to datasets made public through its infrastructure. For the BIEN db data, the plan is:
* t... Martha Narro

04:32 PM Task #931 (New): BIEN db at iPlant

Parent issue for tasks related to moving BIEN3 relational database and associated analytical views to iPlant. Martha Narro

05/20/2014

04:26 PM Task #929 (New): change TNRS client to store metadata

* see details in [[2013-06-13 conference call#include-TNRS-version-and-settings-in-TNRS-cache]]
* after implementi... Aaron Marcuse-Kubitza

04:17 PM Task #928 (New): switch to new TNRS setup

# #927 (part of #915)
# #917
# #916 (using rescrubbed names)
# #915
# -#929 (metadata)- _postponed_ Aaron Marcuse-Kubitza

03:26 PM Task #927 (Resolved): move morphospecies name formation to normalized DB

* currently, it's only in the analytical_stem view Aaron Marcuse-Kubitza