lib/sh/make.sh: self_make(): renamed to with_rm() for clarity, since this is used only to progagate $rm, and does not also invoke a command with the same name as the current function, as the name might suggest
*{.sh,run}: use new begin_target instead of `echo_func; set_make_vars`
moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).
*{.sh,run}: use simpler .rel() instead of `. "$(dirname "${BASH_SOURCE0}")"/...` for relative includes
bugfix: inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql.run: ^.preamble.sql/make(): need to run set_make_vars even though the make vars are not used, because set_make_vars sets $_remake, which is needed by self_make
bugfix: *run: overriding targets: use new self_make to properly progagate the $remake flag to the overridden target, so that the target itself is not skipped
lib/runscripts/table_dir.run: renamed table to subdir because this can apply to any datasrc subdir. moved table-specific code to table.run.
bugfix: inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql.run: override ^.preamble.sql/make() and use ../_src/GBIFPortalDB-2013-02-20.dump as the dumpfile instead of this file, which does not contain the preamble
bugfix: inputs/GBIF/_MySQL/MySQL.data.sql.run: moved to GBIFPortalDB-2013-02-20.data.sql.run since it's actually the raw input file, not the ANSI export of it, that needs to be imported
added lib/sh/resume_import.sh and use it in inputs/GBIF/_MySQL/MySQL.data.sql.run
inputs/GBIF/_MySQL/MySQL.data.sql.run: is_pkey_imported__int(): made pkey name configurable in $pkey_name
inputs/GBIF/_MySQL/MySQL.data.sql.run: import_resume_pos() run time: removed seconds because the precision is likely only to the nearest half-minute
inputs/GBIF/_MySQL/MySQL.data.sql.run: documented that import_resume_pos() takes 6 min to run, with 37 iterations
added inputs/GBIF/_MySQL/MySQL.data.sql.run, with helper functions for resuming the import to MySQL from where it left off. this is very useful if the import is interrupted for any reason, because otherwise, the entire import would have to be run again from the start, taking 40-50 hours. import_resume_pos() uses new binsearch() to find where in the file the import left off, based on which pkeys have already been imported. (GBIF pkeys are unfortnately not in any order in the input file, nor are they in insertion order in the imported table, because MySQL instead clusters the table by the pkey. this necessitates a much more complex solution to resuming a partial import.)
