moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

Added inputs/SpeciesLink/Source/, containing referenceType metadata

inputs/*/: Placed all logs/ subdirs and import_order.txt under version control, using `make inputs/.../add`