mappings/VegCore.csv: cultivated* source: Added picklist value to URL
README.TXT: Data import: On nimoy: Creating analytical_aggregate table: publish_analytical_db: Rewrapped line
README.TXT: Data import: On nimoy: Creating analytical_aggregate table: Changed name to analytical_aggregate_r<revision> to allow storing different versions simultaneously
publish_analytical_db: Require caller to specify the name of the table to load data into. This allows appending a revision to analytical_aggregate, or publishing a table other than analytical_aggregate.
inputs/input.Makefile: SVN: add: verify/: Added *.xls to svn:ignore
backups/Makefile: SQL: Full DB: vegbien.%.backup: Also generate MD5 sum
inputs/import.stats.xls: Updated import times
README.TXT: Data import: Delete previous imports based on the full DB backup file
backups/Makefile: Support removing public schema versions based on the version of a full DB backup
mappings/VegCore.csv, Veg+-VegCore.csv: Removed the additional dict namespace for the SALVIAS sources. This removes the extra "dict:" namespace on the generate Redmine source term names.
mappings/VegCore.csv, Veg+-VegCore.csv: Added TNRS provider namespace, inserting it before BIEN in the sort order
mappings/VegCore.csv: Changed + to _ in URL fragments
mappings/VegCore.csv, Veg+-VegCore.csv: Removed the additional BIEN namespace for the BIEN sources, and use just BIEN2 and VegBIEN as the sub-namespaces. This removes the extra "BIEN:" namespace on the generate Redmine source term names.
mappings/VegCore.csv, Veg+-VegCore.csv: Removed the "terms" text in the current DwC terms' provider, and leave just the sort order. This removes the extra "terms:" namespace on the generate Redmine source term names.
dict2redmine: url_term(): Remove empty URL comments
dict2redmine: url_comment_text(): Interpret a URL comment containing just a number as a sort order without text
dict2redmine: url_term(): Prefix any provider in the URL to the term name, to create a namespace. Each hierarchical component of the provider is stored in a URL comment.
dict2redmine: Added url_comment_re
dict2redmine: Added url_comment_text()
dict2redmine: Call simplify_url() just on the first source so that source2redmine_url() can use the raw URL (to extract comments, etc.)
dict2redmine: Removed no longer used explicit Definition column #
dict2redmine: Use the input spreadsheet's column names and order, and pass through columns other than the term and sources columns
mappingsf/VegCore.csv, Veg+-VegCore.csv: Renamed Comments to Definition to match Redmine table
mappings/VegCore.csv, Veg+-VegCore.csv: Reversed order of Comments, Sources columns to match Redmine table order
dict2redmine: Store term_str in a var before using it, like sources_str
dict2redmine: Added Definition column
dict2redmine: Take term and sources col #s as args instead of hardcoding them by column name or position
dict2redmine: url_term(): Also match any namespace that's part of the term
dict2redmine: Sources: Use source2redmine_url() to extract the term from each source URL
dict2redmine: source2redmine_url(): Support empty URLs
dict2redmine: url_term(): Fixed bug where need to use match.group() instead of match.groups()
mappings/Makefile: Create VegCore.redmine from VegCore.csv
Added dict2redmine
mappings/VegCore.csv, Veg+-VegCore.csv: Renamed Source column to Sources because it can contain multiple sources
mappings/VegCore.csv, Veg+-VegCore.csv: Source: DwC terms: Scoped sort order by category, using the steps at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore_refactoring#Scope-DwC-sort-order-by-category>
mappings/VegCore.csv, Veg+-VegCore.csv: Source: VegX terms: Split combined field group/field sort order into separate sort orders for field and field group
mappings/VegCore.csv, Veg+-VegCore.csv: Source: VegX terms: Added top-level table sort order
mappings/VegCore.csv: taxonName: Reordered sources so it would sort with *TaxonName and scientificName
mappings/VegCore.csv: Source: DwC Taxon: Added sort order so it would sort together with its fields
mappings/VegCore.csv, Veg+-VegCore.csv: Source: DwC occurrenceID: Corrected sort order to 019 instead of 000
mappings/VegCore.csv, Veg+-VegCore.csv: Source: DwC terms: Added category, with category sort order, as URL comment. This will allow terms to be sorted just within their category rather than globally for DwC.
mappings/Veg+-VegCore.csv: Source: DwC: dcterms: Added back "dcterms:" prefix to URL fragment
mappings/VegCore.csv: Source: TNRS terms: Added sort order to web page fragment (simple_download, detailed_download)
mappings/VegCore.csv, Veg+-VegCore.csv: Removed no longer used Order within table column. Instead, embed the sort order in the URL using a () comment.
mappings/VegCore.csv, Veg+-VegCore.csv: Merged the Order within table column with the Source URL, using the steps at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore_refactoring#Merging-the-Order-within-table-column-with-the-Source-URL>. Sorting on the Source column now groups related terms together according to their sort order in the source they came from.
mappings/Veg+-VegCore.csv: Order within table: Filled in missing sort orders
mappings/VegCore.csv, Veg+-VegCore.csv: Source: Web pages: Use / instead of . to separate nested elements of URL fragment. Use _ instead of + to represent space.
mappings/VegCore.csv: Order within table: Filled in missing sort orders
mappings/VegCore.csv: Source: Removed trailing whitespace
mappings/VegCore.csv: Order within table: Fixed to include one entry for every URL, including when the Order field is empty and there are multiple URLs
mappings/VegCore.csv: Order within table: Fixed to include one entry for every URL
mappings/VegCore.csv: Source: "dcterms:" terms: Fixed URL fragments to use : instead of # after dcterms
mappings/VegCore.csv, Veg+-VegCore.csv: Sources: BIEN2: Moved DB sort order right before the DB name in the URL to avoid duplicating the DB name in the comment
mappings/VegCore.csv, Veg+-VegCore.csv: Sources: Added sort order comments to URLs so they sort in the order indicated at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#Sources>. URL comments are enclosed in (), and the sort order element of a comment is a number right after the ( .
mappings/Makefile: .Veg+-VegCore.csv.last_cleanup: Sort by the source URL instead of the VegCore term
mappings/Makefile: Split .Veg+-VegCore.csv.last_cleanup and .VegX-VegCore.csv.last_cleanup into separate targets so their recipes can be different
mappings/VegCore-VegBIEN.csv: Mapped dcterms:rights
backups/Makefile: Synchronization: Also sync *.md5
import_all: Fixed bug where need to wait for all asynchronous commands started before the main import, not just the first
import_all: Import all Source tables before the herbaria list, so that any custom metadata will override the info in the herbaria list
input.Makefile: Tables discovery: $(dontImport): Don't import the Source table when $import_source env var is set to ""
input.Makefile: SVN: add: Add a Source table to store datasource metadata. This adds a Source table to all herbaria which are listed in .herbaria, and therefore didn't previously need a Source table to indicate their referenceType and sampleType.
Added inputs/VASCAN/Source/
csvs.py: stream_info(): Use the Excel dialect and an empty header if the CSV file is empty
pg_dump_limit: Also remove CREATE DATABASE statements
Added inputs/JBM/Source/
mappings/Veg+-VegCore.csv: Removed type->dcterms:type automapping because this term can have many different meanings
Added inputs/NVS/Source/
Added inputs/IUCN/European_Red_List_Plants/header.csv
Added inputs/CVS/_src/
input.Makefile: SVN: $(svnFilesGlob): Include test.xml.ref instead of all test*.xml* to avoid including test outputs
inputs/*/verify/: Updated svn:ignore
mappings/VegCore-VegBIEN.csv: Mapped verbatimCoordinates
Updated inputs/HIBG/Specimen/new_terms.csv
Added inputs/HIBG/Source/
inputs/HIBG/verify/: Updated svn:ignore
Added inputs/NCU-NCSC/Source/
inputs/NCU-NCSC/verify/: Updated svn:ignore
backups/Makefile: Checksums: %.md5/test: Made it an _always target
backups/Makefile: Checksums: Added %.md5/test to test generated checksums
backups/Makefile: Moved md5-related targets to separate Checksums section
backups/Makefile: %.md5: Removed not applicable comment which had been copied from %.sql
inputs/VegBank/plot_/map.csv: Mapped confidentialitystatus to coordinateUncertaintyInMeters, overriding locationaccuracy when the confidentialitystatus indicates fuzzing
inputs/NVS/*/map.csv: Mapped Taxon Growth Form values to growthform enum
inputs/NVS/import_order.txt: Specified import order
inputs/input.Makefile: Staging tables installation: $(allInstalls): Exclude the Source table, which contains only (metadata) mappings, not data
Regenerated vegbien.ERD exports
Added inputs/NVS/TaxonOccurrence.Understory/
Added inputs/NVS/Coordinates/
inputs/NVS/Plot/map.csv: Mapped Plot
inputs/NVS/: Renamed Organism to AggregateOccurrence because this actually contains aggregated samplings
inputs/NVS/StemObservation/map.csv: Mapped Item ID, Item Obs ID
Added inputs/NVS/StemObservation/
Added inputs/NVS/TaxonOccurrence/
