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# Date Author Comment
7964 03/13/2013 07:25 AM Aaron Marcuse-Kubitza

Added inputs/MO/_archive

7963 03/13/2013 07:25 AM Aaron Marcuse-Kubitza

Added inputs/MO/_src/

7962 03/13/2013 07:14 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: Brad-Boyle root: Fixed link

7961 03/13/2013 07:12 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: CTFS root: Fixed link

7960 03/13/2013 07:11 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: CTFS-schema: Use $Redmine_svn

7959 03/13/2013 06:46 AM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: Remove www subdomain

7958 03/13/2013 06:25 AM Aaron Marcuse-Kubitza

Added web/logs/

7957 03/13/2013 06:22 AM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: Use the simpler ErrorDocument directive instead of a catch-all RewriteRule to handle non-filesystem paths

7956 03/13/2013 06:11 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: $alias: Use HTTP_HOST and SCRIPT_NAME so the alias doesn't need to be hardcoded

7955 03/13/2013 06:09 AM Aaron Marcuse-Kubitza

web/vegpath/util.php: Added ensure_prefix(), ensure_suffix()

7954 03/13/2013 05:32 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: Switching back to path.vg now that the .vg root DNS is back online

7953 03/13/2013 04:36 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: Use REQUEST_URI (removing the script's own dir) instead of PATH_INFO, to support being used for the Apache ErrorDocument directive

7952 03/13/2013 04:24 AM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: mod_rewrite: Don't run any further rewrite rules if path exists, to avoid needing to add RewriteConds to each RewriteRule to check if the path exists

7951 03/13/2013 01:39 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: Changed page title to contain "persistent URLs" because VegPaths are conceptually a type of PURL <http://en.wikipedia.org/wiki/PURL>

7950 03/13/2013 12:04 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: $alias: Switching back to j.mp/vegpath# because the .vg root DNS server is down. (The .vg registrar adamsnames.com also displays an under construction page.) If the registrar stays down, we may want to switch a different top-level domain.

7949 03/12/2013 07:59 PM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: DirectoryIndex: Removed index.htm because HTML files should not be used for redirection (they don't issue the Location: header needed by clients other than web browsers)

7948 03/12/2013 07:52 PM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: mod_rewrite: Added `RewriteOptions inherit` so this .htaccess file can be copied to subdirs and will inherit the "unknown paths" rule

7947 03/12/2013 07:37 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Use $PATH_INFO (i.e. index.php/$PATH_INFO) instead of the query string to pass the path to index.php, so that the query string can be used for other things

7946 03/12/2013 04:28 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: top-level path parsing: Use parse_dot_path() instead of parse_mixed_path() because XPaths are now (client-side) fragments, and don't need to be supported by the path mechanism

7945 03/12/2013 04:26 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: SALVIAS: Don't append #Plot_ when there is no subpath

7944 03/12/2013 03:19 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: SALVIAS: Factored out URL to $SALVIAS

7943 03/12/2013 03:16 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: SALVIAS: Appended Plot_ to dest URL because both data dictionary sections start with this, so it doesn't need to be included in the VegPath

7942 03/12/2013 02:56 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: XPath resources: Removed # at end of destination URL because the # is now part of the #/XPath suffix (and is added by the user)

7941 03/12/2013 02:53 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: XPath resources: Added # before XPath because the XPath is actually a location within the resource, and thus resolvable by the client (or user) themselves, rather than part of the redirected URL (which only needs to forward to the XML schema file)

7940 03/12/2013 02:41 AM Aaron Marcuse-Kubitza

web/vegpath/index.php: Updated $alias to the newly-registered path.vg domain, which is shorter and more intuitive-looking than the previous value j.mp/vegpath (from bitly.com). Note that using a domain also allows redirects without JavaScript, which can be used by any web client (such as a Python script), not just a web browser.

7939 03/11/2013 11:19 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Renamed ref to ns to emphasize that the resources in this field are namespaces for the paths

7938 03/11/2013 11:16 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: add_ref(): Renamed $suffix to $path_pat to distinguish it from the actual suffix string sent in the URL

7937 03/11/2013 11:09 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: custom_separator(): Marked optional params as such

7936 03/11/2013 11:07 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Terms: IH-db: Factored out phpMyAdmin URL into $IH_db

7935 03/11/2013 11:05 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Terms: Added IH-db

7934 03/11/2013 11:05 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: php*Admin(): Added support for a fixed table that doesn't need to be specified in the path

7933 03/11/2013 10:43 PM Aaron Marcuse-Kubitza

web/: Removed svn:executable permissions from non-executable files

7932 03/11/2013 10:36 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Data: Added Institutions subsection

7931 03/11/2013 10:33 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Placed Terms and Data sections side-by-side in two columns so that data resources would not need to come after a long list of terms resources

7930 03/11/2013 10:31 PM Aaron Marcuse-Kubitza

web/vegpath/main.css: Added .indent

7929 03/11/2013 10:11 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: People: Added Brad's VegCore ID terms spreadsheets

7928 03/11/2013 10:10 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Factored Redmine svn URLs out into $Redmine_svn

7927 03/11/2013 10:06 PM Aaron Marcuse-Kubitza

Added schemas/VegCore/Brad_Boyle/ with Brad's VegCore IDs terms spreadsheets

7926 03/11/2013 09:51 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL fragment redirect: Removed loading indicator (blinking of resource being loaded) because for file downloads, the download will not redirect to a new page and the resource name will instead remain blinking

7925 03/11/2013 09:48 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL fragment redirect: Fixed bug where need to use parse_mixed_path() instead of parse_dot_path() to support XPaths

7924 03/11/2013 09:48 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Terms: Added CTFS

7923 03/11/2013 09:23 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL patterns header: Reworded comment to clarify that the elements that can be left out are in italics

7922 03/11/2013 09:09 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL fragment redirect: Only perform fragment redirect if URL shortener requires it (as indicated by the $alias ending in #)

7921 03/11/2013 09:01 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: nimoy nodes: Factored nimoy phpMyAdmin() calls out into nimoy_db() function

7920 03/11/2013 08:57 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: nimoy nodes: Factored nimoy URL prefix out into $nimoy

7919 03/11/2013 08:51 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: SALVIAS: Added subnodes for each SALVIAS database on nimoy

7918 03/11/2013 08:37 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: VegCore: Changed suffix from .table.column to .term because VegCore terms are globally unique and don't need a table prefix

7917 03/11/2013 08:36 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: BIEN2: Added subnodes for each BIEN2 database on nimoy

7916 03/11/2013 08:04 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Inlined VegBank() because it's only used once

7915 03/11/2013 08:01 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: VegBank(): Use custom_separator()'s new $main_url param

7914 03/11/2013 08:00 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: custom_separator(): Added $main_url param like in by_prefix(), for use when there is no path

7913 03/11/2013 07:55 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: VegBank(): Use new custom_separator()

7912 03/11/2013 07:55 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: VegBank(): Use new custom_separator()

7911 03/11/2013 07:53 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: VegBank(): Use new custom_separator()

7910 03/11/2013 07:53 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Added custom_separator()

7909 03/11/2013 07:52 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Add # suffix to $alias instead of adding it in add_ref(), because not all aliases will use a # suffix

7908 03/11/2013 07:48 PM Aaron Marcuse-Kubitza

web/vegpath/util.php: Added array_non_empty(), join_non_empty()

7907 03/11/2013 07:14 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: add_ref(): redirect: Don't display "Loading" as the page itself is not shown to the user when using a Location: header

7906 03/11/2013 07:12 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL fragment redirect: Fixed bug where can't prefix the fragment with / because this won't work if VegPath is not at the top-level of the domain (and in any case is unnecessary to form a relative path)

7905 03/11/2013 07:09 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL fragment redirect: Blink the namespace being loaded, rather than displaying "Loading" at the bottom of the page, to make it clearer what's being loaded

7904 03/11/2013 06:42 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: add_ref(): Don't display the URL pattern in monospace, because fixed-width font is not needed and variable-width font is easier to read. This requires decreasing the header level because variable-width font is bigger than fixed-width font.

7903 03/11/2013 06:41 PM Aaron Marcuse-Kubitza

web/vegpath/main.css: Added entries for h6

7902 03/11/2013 06:28 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: parse_dot_path() calls: Fixed bug where need to test result components using \`!== ""\` instead of just using the value as a boolean because PHP incorrectly interprets the string "0" as false

7901 03/11/2013 06:24 PM Aaron Marcuse-Kubitza

web/vegpath/util.php: Path: Made $tail default to ""

7900 03/11/2013 06:20 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: URL fragment redirect: Prepend / instead of ? because filesystem paths are now redirected using .htaccess, removing the need to set the query string

7899 03/11/2013 06:16 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: phpMyAdmin(): Fixed bug where can't use tbl_alter as the column target page because it requires a token param, which is only obtained after the user logs in

7898 03/11/2013 06:04 PM Aaron Marcuse-Kubitza

web/vegpath/util.php: partition(): Fixed bug where strpos() actually does take the search-for param second rather than first (but returns false on no match)

7897 03/11/2013 06:00 PM Aaron Marcuse-Kubitza

web/vegpath/util.php: partition(): Fixed bug where strpos() returns false rather than -1 on no match

7896 03/11/2013 05:59 PM Aaron Marcuse-Kubitza

web/vegpath/util.php: partition(): Fixed bug where strpos() takes the search-for param first rather than second

7895 03/11/2013 05:37 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: php*Admin(): Append $target to $url in separate step from returning $url, to make it easier to debug-print the value of $url before returning it

7894 03/11/2013 05:30 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: BIEN2: Fixed to use phpMyAdmin with correct URL instead of vegbiendev phpPgAdmin placeholder

7893 03/11/2013 05:20 PM Aaron Marcuse-Kubitza

web/vegpath/index.php: Added phpMyAdmin()

7892 03/11/2013 04:59 PM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: mod_rewrite: RewriteBase: Changed to / now that VegPath is hosted at vegbiendev.nceas.ucsb.edu

7891 03/11/2013 04:58 PM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: unknown paths: Don't redirect to index.php if the path already starts with index.php, to help avoid infinite redirect recursion

7890 03/11/2013 04:54 PM Aaron Marcuse-Kubitza

web/vegpath/.htaccess: unknown paths: Removed no longer accurate VegRef from comment header

7889 03/11/2013 04:43 PM Aaron Marcuse-Kubitza

vegpath/.htaccess: DirectorySlash: Lowercased On for consistency with other boolean directives

7888 03/11/2013 04:26 PM Aaron Marcuse-Kubitza

Added web/vegpath.conf with Apache VirtualHost config

7887 03/11/2013 03:26 PM Aaron Marcuse-Kubitza

vegpath/index.php: VegBank(): Fixed bug where name had incorrectly been replaced with $name

7886 03/11/2013 03:24 PM Aaron Marcuse-Kubitza

vegpath/index.php: phpPgAdmin(): Factored out appending of "&subject="

7885 03/11/2013 03:23 PM Aaron Marcuse-Kubitza

vegpath/: Archived no longer used vegpath/index.htm

7884 03/11/2013 03:05 PM Aaron Marcuse-Kubitza

vegpath/index.*: IH: URL-encode ' in search URL to avoid needing to backslash-escape it

7883 03/11/2013 03:04 PM Aaron Marcuse-Kubitza

vegpath/index.php: IH: Fixed search URL to undo incorrect search-and-replace of + with .

7882 03/10/2013 06:51 AM Aaron Marcuse-Kubitza

vegpath/index.*: Changed "Supported URLs" to "Supported URL patterns" because the provided short URLs take parameters that are filled into the destination URL

7881 03/10/2013 06:46 AM Aaron Marcuse-Kubitza

vegpath/index.*: Removed tagline from window title because the window title (which becomes the bookmark name) only needs to be long enough to identify what the page is, and should not be cluttered with descriptions

7880 03/10/2013 06:43 AM Aaron Marcuse-Kubitza

vegpath/index.*: Changed tagline to emphasize that the shortened URLs are especially intended to be human-readable, e.g. for use as column names

7879 03/10/2013 06:37 AM Aaron Marcuse-Kubitza

VegRef/: Renamed to VegPath to make it clearer that the purpose of the web service is to provide short, globally unique paths to resources (e.g. for use as global IDs <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Global_IDs&gt;)

7878 03/10/2013 06:10 AM Aaron Marcuse-Kubitza

VegRef/.htaccess: URL resolution: mod_rewrite: Fixed bug where also need to consider if %{REQUEST_FILENAME} is a dir or symlink, which occurs e.g. when redirecting to the VegRef/ dir itself

7877 03/09/2013 10:50 PM Aaron Marcuse-Kubitza

web/VegRef/.htaccess: Turned off RewriteEngine temporarily because it was preventing the internal VegRef redirection from working

7876 03/09/2013 10:48 PM Aaron Marcuse-Kubitza

Added web/VegRef/, which provides a URL-shortening service for vegetation references. VegRef URLs are short and human-readable enough to be used as database column names. This also causes Google spreadsheets to display a clickable link for each column name, which takes the user to the data dictionary definition for the term. String row IDs (such as global IDs <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Global_IDs&gt;) can also be clickable VegRef URLs.

7875 03/08/2013 10:26 PM Aaron Marcuse-Kubitza

inputs/NCU/Specimen/map.csv: cultivated: Map false (0) to NULL because cultivated can only be true or NULL, not false

7874 03/08/2013 09:14 PM Aaron Marcuse-Kubitza

inputs/CTFS/_src/_README.TXT: Added e-mails from Brad Boyle about issues with species aggregation methods

7873 03/07/2013 06:27 PM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/map.csv: Populated specimenHolderInstitutions

7872 03/07/2013 03:21 PM Aaron Marcuse-Kubitza

Added planning/goals/BIEN3_derived_data_products.docx.url

7871 03/07/2013 03:19 PM Aaron Marcuse-Kubitza

Added planning/goals/BIEN3_derived_data_products.docx

7870 03/06/2013 11:00 PM Aaron Marcuse-Kubitza

inputs/ARIZ/omoccurrences/map.csv: cultivationStatus: Map to NULL if it's false, because cultivated can only be true or NULL

7869 03/06/2013 10:01 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: Merged taxonName_verbatim and scientificNameAuthorship_verbatim into scientificName_verbatim

7868 03/06/2013 09:29 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_plot: Added specimens fields at the end, for use by plots data that also tracks specimens (e.g. Madidi, SALVIAS)

7867 03/06/2013 09:21 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: In PostgreSQL: Removed tests related to unscrubbed_taxondetermination_view and TNRS taxondeterminations, which are no longer needed because TNRS is joined directly to analytical_stem_view

7866 03/06/2013 08:36 PM Aaron Marcuse-Kubitza

mappings/VegCore.htm: Regenerated from wiki. Renamed specimenDonor to specimenDonorInstitution to clarify that this is an institution, not a collector.

7865 03/06/2013 08:30 PM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/map.csv: Mapped flower, fruit -> reproductiveCondition using translation is from e-mail conv between Jim Matthews at Habitat Assessment and Bob Peet on 2010-12-2~3